CSDE1

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CSDE1	ENSG00000009307.15	247.20	218.57	232.88	ENCSR000AEF
HepG2	CSDE1	ENSG00000009307.15	192.18	228.44	210.31	ENCSR985KAT
K562	CSDE1	ENSG00000009307.15	292.05	304.65	298.35	ENCSR000AEO

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	CSDE1-BGHcLV29-HepG2	ENCSR435YKS	CSDE1	HepG2	Released		ENCSR462MFN	CRISPR	KD% = 55.0,50.4
RNA Bind-n-Seq	RBNS: CSDE1		CSDE1	cell-free sample	Released

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
CSDE1	ENCAB463WVX	A303-158A	1			Released, ENCODE4	BGHcLV29-41, Released, ENCODE4
CSDE1	ENCAB259ZCR	A303-160A	1			Released, ENCODE4	BGHcLV29-41, Released, ENCODE4	BGKcLV35-15, Released, ENCODE4

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
CSDE1	K562	CRISPR			BGKcLV28-41,BGKcLV28-42	BGKcLV28-1,BGKcLV28-2	38.7,31.7	NotSatisfied	ENCODE4
CSDE1	K562	CRISPR			CSDE1-BGKcLV35-15,CSDE1-BGKcLV35-16	NT-BGKcLV35-1,NT-BGKcLV35-2	70.7,74.1	Submitting	ENCORE2
CSDE1	HepG2	CRISPR	ENCSR435YKS	ENCSR462MFN	CSDE1-BGHcLV29-41,CSDE1-BGHcLV29-42	NT-BGHcLV29-1,NT-BGHcLV29-2	55.0,50.4	Released	ENCODE4

GeneName	gene_aliases	Status	Project	Note
CSDE1	CSDE1		Released	ENCODE4

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CSDE1 is not avaliable on ENCORE database.

The binding motifs of CSDE1

Proteins bound to RNA

CSDE1 RNA is bound by 41 proteins.

eCLIP assay for CSDE1 is not avaliable on ENCORE database.

41 proteins are bound to CSDE1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	115259841	115259855	-	3'-UTR,intron-Distal,intron-Proximal	3.64609	3.54602	K562	TIA1
chr1	115260397	115260501	-	3'-UTR,intron-Distal,intron-Proximal	3.76753	5.17218	HepG2	UPF1
chr1	115280618	115280679	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.37071	22.00627	HepG2	BCLAF1
chr1	115260627	115260682	-	3'-UTR,intron-Distal	4.07718	12.33987	K562	IGF2BP1
chr1	115260688	115260812	-	3'-UTR,CDS,intron-Distal	4.33411	5.79075	HepG2	IGF2BP3
chr1	115260689	115260760	-	3'-UTR,intron-Distal	3.12063	11.86239	K562	IGF2BP2
chr1	115280583	115280618	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.64310	20.37640	HepG2	BCLAF1
chr1	115260232	115260274	-	3'-UTR,intron-Distal	3.00770	4.58130	K562	ZC3H11A
chr1	115260077	115260138	-	3'-UTR,intron-Distal	3.63628	8.32153	HepG2	TIA1
chr1	115259968	115260006	-	3'-UTR,intron-Distal	3.48834	5.17284	K562	TIA1
chr1	115259863	115259893	-	3'-UTR,intron-Distal,intron-Proximal	3.77055	3.24706	K562	NOLC1
chr1	115259856	115259899	-	3'-UTR,intron-Distal,intron-Proximal	3.21954	3.70380	HepG2	LARP4
chr1	115260424	115260478	-	3'-UTR,intron-Distal	3.67500	8.94344	HepG2	SUB1
chr1	115260682	115260717	-	3'-UTR,intron-Distal	3.40342	5.41090	K562	IGF2BP1
chr1	115260050	115260118	-	3'-UTR,intron-Distal	3.23989	19.13605	K562	TIA1
chr1	115259738	115259763	-	3'-UTR,intron-Distal	3.07378	6.34759	K562	IGF2BP2
chr1	115259880	115259896	-	3'-UTR,intron-Distal,intron-Proximal	4.40945	11.78977	K562	PABPC4
chr1	115260717	115260808	-	3'-UTR,CDS,intron-Distal	4.05479	13.87315	K562	IGF2BP1
chr1	115259853	115259895	-	3'-UTR,intron-Distal,intron-Proximal	4.42620	3.84732	HepG2	TIA1
chr1	115282312	115282367	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.87361	9.67604	K562	IGF2BP1
chr1	115259860	115259880	-	3'-UTR,intron-Distal,intron-Proximal	4.38104	11.02630	K562	PABPC4
chr1	115259960	115260031	-	3'-UTR,intron-Distal	3.86230	37.09998	K562	PABPC4
chr1	115282339	115282368	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.55352	3.67576	K562	IGF2BP2
chr1	115259858	115259902	-	3'-UTR,intron-Distal,intron-Proximal	4.79122	8.04249	HepG2	SUB1
chr1	115260313	115260322	-	3'-UTR,intron-Distal	4.28228	3.98488	K562	TIA1
chr1	115260479	115260508	-	3'-UTR,intron-Distal,intron-Proximal	3.17728	3.24714	K562	IGF2BP1
chr1	115260677	115260749	-	3'-UTR,intron-Distal	3.27486	5.01616	HepG2	YBX3
chr1	115259625	115259711	-	3'-UTR,intron-Distal	3.25416	3.10460	HepG2	GRSF1
chr1	115260118	115260136	-	3'-UTR,intron-Distal	3.87860	17.46441	K562	TIA1
chr1	115259852	115259895	-	3'-UTR,intron-Distal,intron-Proximal	4.49336	11.05753	K562	FMR1
chr1	115292592	115292612	-	5'-UTR,intron-Distal,intron-Proximal	3.82273	4.43788	HepG2	SUB1
chr1	115292554	115292623	-	5'-UTR,intron-Distal,intron-Proximal	3.76524	3.81063	HepG2	TIA1
chr1	115292771	115292780	-	5'-UTR,intron-Distal	3.31162	23.05676	K562	YBX3
chr1	115292764	115292771	-	5'-UTR,intron-Distal	3.84008	16.73002	K562	YBX3
chr1	115292658	115292715	-	5'-UTR,intron-Distal	3.47803	17.16090	HepG2	BCLAF1
chr1	115292458	115292530	-	5'-UTR,intron-Distal,intron-Proximal	4.24698	6.48440	K562	IGF2BP1
chr1	115292691	115292805	-	5'-UTR,intron-Distal	3.16155	9.00980	K562	GRWD1
chr1	115292531	115292554	-	5'-UTR,intron-Distal,intron-Proximal	4.31219	7.97028	K562	TIA1
chr1	115300544	115300597	-	5'-UTR,intron-Distal,intron-Proximal	3.14730	4.19369	HepG2	DDX3X
chr1	115292578	115292607	-	5'-UTR,intron-Distal,intron-Proximal	3.73637	5.57868	K562	DDX6
chr1	115292743	115292764	-	5'-UTR,intron-Distal	3.43805	23.52647	K562	YBX3
chr1	115292509	115292530	-	5'-UTR,intron-Distal,intron-Proximal	3.52696	11.04837	K562	TIA1
chr1	115300496	115300601	-	5'-UTR,intron-Distal,intron-Proximal	3.75246	18.28185	HepG2	PRPF8
chr1	115292553	115292609	-	5'-UTR,intron-Distal,intron-Proximal	4.04653	4.86533	K562	FXR1
chr1	115292554	115292569	-	5'-UTR,intron-Distal,intron-Proximal	3.08279	4.44293	K562	TIA1
chr1	115292780	115292822	-	5'-UTR,intron-Distal,intron-Proximal	3.81905	35.35742	K562	YBX3
chr1	115292441	115292462	-	5'-UTR,intron-Distal,intron-Proximal	3.83257	4.75351	K562	LIN28B
chr1	115263267	115263285	-	CDS,intron-Distal	3.10804	12.59874	K562	YBX3
chr1	115276610	115276657	-	CDS,intron-Distal	3.24317	4.07069	K562	IGF2BP1
chr1	115273019	115273043	-	CDS,intron-Distal,intron-Proximal	3.24588	3.01092	HepG2	LIN28B
chr1	115273021	115273043	-	CDS,intron-Distal,intron-Proximal	3.40091	14.90763	K562	YBX3
chr1	115268923	115269005	-	CDS,intron-Distal,intron-Proximal	3.37289	4.25123	HepG2	FUS
chr1	115273016	115273043	-	CDS,intron-Distal,intron-Proximal	3.09209	5.85143	K562	LIN28B
chr1	115263285	115263337	-	CDS,intron-Distal	3.09163	16.93141	K562	YBX3
chr1	115279378	115279398	-	CDS,intron-Distal,intron-Proximal	4.17708	26.38453	HepG2	BCLAF1
chr1	115262198	115262241	-	CDS,intron-Distal,intron-Proximal	4.81661	31.17304	K562	LIN28B
chr1	115273217	115273238	-	CDS,intron-Distal	6.08874	16.01150	HepG2	BCLAF1
chr1	115266515	115266524	-	CDS,intron-Distal	3.15962	7.19943	K562	YBX3
chr1	115282438	115282492	-	CDS,intron-Distal,intron-Proximal	3.43392	4.22460	K562	RBM15
chr1	115275326	115275335	-	CDS,intron-Distal	3.80249	13.50128	K562	YBX3
chr1	115261249	115261261	-	CDS,intron-Distal	3.22218	11.16611	K562	YBX3
chr1	115266505	115266515	-	CDS,intron-Distal	3.69579	10.26109	HepG2	BCLAF1
chr1	115275281	115275302	-	CDS,intron-Distal	3.64953	28.58110	K562	YBX3
chr1	115276728	115276738	-	CDS,intron-Distal	3.72251	10.26109	HepG2	BCLAF1
chr1	115276681	115276728	-	CDS,intron-Distal	3.52466	16.91482	HepG2	BCLAF1
chr1	115275275	115275281	-	CDS,intron-Distal	3.55002	25.66607	K562	YBX3
chr1	115275349	115275369	-	CDS,intron-Distal	3.56979	15.17681	K562	YBX3
chr1	115279378	115279399	-	CDS,intron-Distal,intron-Proximal	3.15811	11.02470	K562	PABPC4
chr1	115282366	115282417	-	CDS,intron-Distal,intron-Proximal	3.52831	14.49697	K562	YBX3
chr1	115263323	115263338	-	CDS,intron-Distal	3.16880	9.33743	HepG2	BCLAF1
chr1	115279398	115279475	-	CDS,intron-Distal	4.50762	52.47219	HepG2	BCLAF1
chr1	115266539	115266559	-	CDS,intron-Distal	3.62180	24.65969	K562	YBX3
chr1	115276352	115276381	-	CDS,intron-Distal,intron-Proximal	3.84417	24.48648	HepG2	BCLAF1
chr1	115263256	115263315	-	CDS,intron-Distal	4.09076	27.47813	HepG2	BCLAF1
chr1	115262205	115262247	-	CDS,intron-Distal	3.63245	6.13978	HepG2	PPIG
chr1	115267879	115267922	-	CDS,intron-Distal	4.38751	21.83328	K562	LIN28B
chr1	115275224	115275267	-	CDS,intron-Distal,intron-Proximal	3.48402	20.38096	HepG2	BCLAF1
chr1	115262209	115262239	-	CDS,intron-Distal	3.89548	5.27471	HepG2	LIN28B
chr1	115272909	115272957	-	CDS,intron-Distal	3.87327	7.54112	K562	FXR1
chr1	115282419	115282470	-	CDS,intron-Distal,intron-Proximal	3.20930	9.85276	HepG2	GRWD1
chr1	115262266	115262356	-	CDS,intron-Distal	3.39566	5.16413	K562	FXR1
chr1	115262239	115262306	-	CDS,intron-Distal	3.72246	6.69135	HepG2	LIN28B
chr1	115263322	115263338	-	CDS,intron-Distal	3.76490	8.70564	K562	LIN28B
chr1	115276356	115276477	-	CDS,intron-Distal,intron-Proximal	3.46674	13.03509	K562	GRWD1
chr1	115267879	115267952	-	CDS,intron-Distal	3.00808	5.00435	K562	IGF2BP1
chr1	115272957	115272981	-	CDS,intron-Distal	3.16612	4.47738	K562	FXR1
chr1	115277099	115277144	-	CDS,intron-Distal	3.58995	5.63059	K562	IGF2BP1
chr1	115263229	115263257	-	CDS,intron-Distal	3.62076	14.43604	K562	YBX3
chr1	115266559	115266564	-	CDS,intron-Distal	4.29385	35.68481	K562	YBX3
chr1	115266603	115266620	-	CDS,intron-Distal	3.21224	17.49181	K562	YBX3
chr1	115273151	115273206	-	CDS,intron-Distal	3.61630	5.76525	K562	PUM1
chr1	115273168	115273237	-	CDS,intron-Distal	3.67541	14.04573	HepG2	SUB1
chr1	115261190	115261235	-	CDS,intron-Distal,intron-Proximal	3.06208	5.61685	K562	AQR
chr1	115273238	115273268	-	CDS,intron-Distal	3.68750	16.87739	HepG2	BCLAF1
chr1	115275335	115275349	-	CDS,intron-Distal	4.41982	20.22691	K562	YBX3
chr1	115266503	115266525	-	CDS,intron-Distal,intron-Proximal	4.78446	11.21783	K562	LIN28B
chr1	115277141	115277144	-	CDS,intron-Distal	3.57383	23.87202	HepG2	BCLAF1
chr1	115279378	115279385	-	CDS,intron-Distal,intron-Proximal	3.35033	7.37965	K562	YBX3
chr1	115276647	115276713	-	CDS,intron-Distal	3.59428	10.37078	K562	LIN28B
chr1	115272999	115273041	-	CDS,intron-Distal,intron-Proximal	3.44031	4.51007	K562	IGF2BP1
chr1	115279446	115279470	-	CDS,intron-Distal	3.46318	14.22452	K562	YBX3
chr1	115273127	115273144	-	CDS,intron-Distal,intron-Proximal	3.91214	6.42536	K562	LIN28B
chr1	115276423	115276476	-	CDS,intron-Distal	3.94940	6.71529	K562	IGF2BP1
chr1	115272898	115272957	-	CDS,intron-Distal	3.48195	3.76528	K562	IGF2BP1
chr1	115273162	115273215	-	CDS,intron-Distal	3.68832	3.36793	K562	FXR1
chr1	115269608	115269692	-	CDS,intron-Distal	4.81374	7.90121	K562	FXR1
chr1	115263306	115263338	-	CDS,intron-Distal	3.31552	8.05055	K562	FXR2
chr1	115268794	115268838	-	CDS,intron-Distal,intron-Proximal	5.56799	8.38577	HepG2	PRPF8
chr1	115269691	115269710	-	CDS,intron-Distal	3.42493	3.66607	K562	FMR1
chr1	115269610	115269689	-	CDS,intron-Distal	3.25588	10.85749	K562	FXR2
chr1	115263165	115263221	-	CDS,intron-Distal,intron-Proximal	3.34107	11.41920	K562	METAP2
chr1	115263231	115263303	-	CDS,intron-Distal	3.17409	3.55107	K562	FXR1
chr1	115277064	115277141	-	CDS,intron-Distal	3.74472	50.97873	HepG2	BCLAF1
chr1	115261354	115261433	-	CDS,intron-Distal,intron-Proximal	3.98950	3.50006	HepG2	SF3B4
chr1	115263226	115263316	-	CDS,intron-Distal	3.06188	12.30918	HepG2	G3BP1
chr1	115267922	115267938	-	CDS,intron-Distal	5.00999	17.52078	K562	LIN28B
chr1	115276616	115276673	-	CDS,intron-Distal	3.64921	19.83693	HepG2	BCLAF1
chr1	115266533	115266539	-	CDS,intron-Distal	3.39027	13.69601	K562	YBX3
chr1	115262241	115262252	-	CDS,intron-Distal	4.54544	20.58953	K562	LIN28B
chr1	115275321	115275368	-	CDS,intron-Distal	3.40205	8.91188	K562	LIN28B
chr1	115282347	115282366	-	CDS,intron-Distal,intron-Proximal	3.09012	8.19758	K562	YBX3
chr1	115261328	115261366	-	CDS,intron-Distal	5.31184	23.20270	K562	LIN28B
chr1	115266579	115266590	-	CDS,intron-Distal	3.83442	24.41992	K562	YBX3
chr1	115262252	115262302	-	CDS,intron-Distal	4.26236	18.69851	K562	LIN28B
chr1	115276385	115276412	-	CDS,intron-Distal,intron-Proximal	3.37550	22.56108	HepG2	BCLAF1
chr1	115276356	115276432	-	CDS,intron-Distal,intron-Proximal	3.06958	8.04543	HepG2	G3BP1
chr1	115273214	115273254	-	CDS,intron-Distal	3.99333	13.89942	K562	LIN28B
chr1	115268894	115268940	-	CDS,intron-Distal	3.87251	4.11230	K562	FXR1
chr1	115276630	115276676	-	CDS,intron-Distal	3.62197	3.18236	K562	FXR1
chr1	115261195	115261263	-	CDS,intron-Distal,intron-Proximal	3.16828	7.13280	HepG2	PRPF8
chr1	115263168	115263228	-	CDS,intron-Distal,intron-Proximal	5.75391	59.80346	K562	YBX3
chr1	115275305	115275315	-	CDS,intron-Distal	4.17802	24.52605	K562	YBX3
chr1	115263242	115263336	-	CDS,intron-Distal	3.45875	13.48172	HepG2	FXR2
chr1	115282472	115282511	-	CDS,intron-Distal,intron-Proximal	4.05789	4.12464	HepG2	UCHL5
chr1	115276380	115276410	-	CDS,intron-Distal,intron-Proximal	3.11056	8.89991	HepG2	GRWD1
chr1	115268952	115268998	-	CDS,intron-Distal,intron-Proximal	3.19033	18.29473	HepG2	BCLAF1
chr1	115269614	115269687	-	CDS,intron-Distal	3.20571	22.60100	HepG2	BCLAF1
chr1	115261233	115261239	-	CDS,intron-Distal,intron-Proximal	3.07702	6.77096	K562	YBX3
chr1	115276465	115276524	-	CDS,intron-Distal,intron-Proximal	3.25029	3.57494	HepG2	U2AF2
chr1	115279402	115279478	-	CDS,intron-Distal,intron-Proximal	3.27544	16.89113	K562	ZNF800
chr1	115276410	115276428	-	CDS,intron-Distal	4.33562	10.62705	HepG2	GRWD1
chr1	115266620	115266623	-	CDS,intron-Distal	3.10662	13.33867	K562	YBX3
chr1	115266564	115266579	-	CDS,intron-Distal	4.23019	37.85415	K562	YBX3
chr1	115276352	115276417	-	CDS,intron-Distal,intron-Proximal	3.31314	5.80696	K562	IGF2BP1
chr1	115279400	115279476	-	CDS,intron-Distal	4.55390	19.69134	HepG2	GRWD1
chr1	115266502	115266519	-	CDS,intron-Distal,intron-Proximal	3.35690	7.53312	K562	FXR2
chr1	115291992	115292029	-	intron-Distal	3.01278	3.11628	K562	KHSRP
chr1	115285465	115285572	-	intron-Distal	3.34516	7.63715	K562	KHSRP
chr1	115277147	115277203	-	intron-Distal,intron-Proximal	4.58994	6.96160	K562	SF3B4
chr1	115287812	115287881	-	intron-Distal	5.15585	15.60330	HepG2	U2AF2
chr1	115266463	115266500	-	intron-Distal,intron-Proximal	3.53364	3.94787	K562	AQR
chr1	115283038	115283075	-	intron-Distal	3.43900	4.10408	K562	KHSRP
chr1	115282921	115282983	-	intron-Distal	4.68475	13.26695	K562	KHSRP
chr1	115297749	115297830	-	intron-Distal	3.81159	9.94478	K562	KHSRP
chr1	115300241	115300293	-	intron-Distal	3.20533	3.25653	K562	CSTF2T
chr1	115273312	115273396	-	intron-Distal,intron-Proximal	3.21057	3.90146	K562	KHSRP
chr1	115263141	115263160	-	intron-Distal,intron-Proximal	4.55675	8.30573	K562	AQR
chr1	115265924	115266033	-	intron-Distal	3.15205	3.30286	HepG2	PTBP1
chr1	115282649	115282756	-	intron-Distal	3.75180	11.99390	K562	KHSRP
chr1	115300282	115300355	-	intron-Distal	3.30990	4.01575	K562	NONO
chr1	115286634	115286660	-	intron-Distal	3.11098	6.42458	K562	KHSRP
chr1	115282231	115282302	-	intron-Distal,intron-Proximal	4.53080	5.62258	K562	KHSRP
chr1	115282983	115283008	-	intron-Distal	3.93023	11.44618	K562	KHSRP
chr1	115282875	115282989	-	intron-Distal	3.72571	10.86353	HepG2	QKI
chr1	115285326	115285413	-	intron-Distal	3.08249	3.29213	HepG2	KHSRP
chr1	115282830	115282900	-	intron-Distal	3.80748	9.53244	K562	KHSRP
chr1	115287817	115287877	-	intron-Distal	3.12878	3.93753	K562	U2AF2
chr1	115298117	115298173	-	intron-Distal	4.04470	3.27618	K562	RBFOX2
chr1	115287971	115288074	-	intron-Distal	3.64615	8.21916	HepG2	KHSRP
chr1	115259415	115259515	-	5'-UTR,intron-Distal,intron-Proximal	3.26023	3.66774	HepG2	CSTF2
chr1	115266653	115266723	-	intron-Distal,intron-Proximal	4.20894	3.42844	K562	KHSRP
chr1	115283008	115283038	-	intron-Distal	3.50927	7.19702	K562	KHSRP
chr1	115284336	115284371	-	intron-Distal,intron-Proximal	3.37088	4.35650	K562	KHSRP
chr1	115300242	115300304	-	intron-Distal	3.91763	3.19125	K562	GTF2F1
chr1	115282756	115282830	-	intron-Distal	3.26556	7.78283	K562	KHSRP
chr1	115300166	115300236	-	intron-Distal	3.61661	5.38982	HepG2	PRPF4
chr1	115294375	115294465	-	intron-Distal	3.15468	3.28644	HepG2	QKI
chr1	115299992	115300121	-	intron-Distal	4.81287	6.16396	K562	NONO
chr1	115292388	115292441	-	intron-Distal,intron-Proximal	5.20412	6.75320	K562	AQR
chr1	115285362	115285465	-	intron-Distal	3.91071	14.53398	K562	KHSRP
chr1	115287493	115287567	-	intron-Distal	4.42782	5.34107	HepG2	KHSRP
chr1	115282155	115282205	-	intron-Distal	4.16604	3.48768	HepG2	KHSRP
chr1	115300058	115300146	-	intron-Distal	3.53041	3.30889	K562	GTF2F1
chr1	115286660	115286691	-	intron-Distal	3.12809	5.31451	K562	KHSRP
chr1	115299917	115299992	-	intron-Distal	3.32558	4.09779	K562	NONO
chr1	115259451	115259515	-	5'-UTR,intron-Distal,intron-Proximal	3.22104	4.86139	HepG2	CSTF2T
chr1	115292029	115292089	-	intron-Distal	3.57257	6.87041	K562	KHSRP
chr1	115282050	115282107	-	intron-Distal	3.22030	3.29213	HepG2	KHSRP
chr1	115265935	115266007	-	intron-Distal	3.32389	3.16095	HepG2	U2AF2
chr1	115283075	115283162	-	intron-Distal	4.33034	8.34041	K562	KHSRP
chr1	115297539	115297624	-	intron-Distal	5.19072	8.90415	K562	KHSRP
chr1	115300236	115300309	-	intron-Distal	4.38058	4.36329	HepG2	PRPF4
chr1	115292312	115292357	-	intron-Distal,intron-Proximal	3.17780	4.18806	HepG2	U2AF2
chr1	115300073	115300134	-	intron-Distal	3.17941	3.66710	HepG2	GTF2F1
chr1	115279777	115279834	-	intron-Distal	3.28807	4.23616	K562	TIA1
chr1	115282910	115283013	-	intron-Distal	4.07943	13.69925	K562	QKI
chr1	115276893	115276949	-	intron-Distal	3.13426	4.76345	K562	KHSRP
chr1	115263105	115263141	-	intron-Distal,intron-Proximal	4.72183	9.04436	K562	AQR
chr1	115297724	115297749	-	intron-Distal	3.58942	4.52210	K562	KHSRP
chr1	115284307	115284336	-	intron-Distal,intron-Proximal	3.96278	7.46973	K562	KHSRP
chr1	115300171	115300279	-	intron-Distal	5.02757	7.86574	HepG2	GTF2F1
chr1	115297624	115297720	-	intron-Distal	4.37146	15.75847	K562	KHSRP
chr1	115300172	115300237	-	intron-Distal	3.15584	3.61506	K562	NONO
chr1	115276753	115276796	-	intron-Distal,intron-Proximal	3.81896	5.78005	K562	KHSRP
chr1	115265952	115266020	-	intron-Distal	4.78638	3.91475	K562	PTBP1
chr1	115300175	115300233	-	intron-Distal	3.58029	5.55220	K562	CSTF2T
chr1	115300056	115300160	-	intron-Distal	4.78722	6.75874	HepG2	PRPF4
chr1	115300500	115300545	-	intron-Distal	4.00008	7.90583	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CSDE1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CSDE1 is not available on ENCORE database.
113 RBPs can affect the levels of CSDE1.

The Knockdown/knockout RNA-Seq assay for CSDE1 is not available on ENCORE database.

113 RBPs can affect the gene expression of CSDE1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CSDE1	ENSG00000009307.11	10086.48200	13108.89330	-0.37810	3.48150	2.42840	HepG2	ABCF1
CSDE1	ENSG00000009307.11	13514.27820	16813.30040	-0.31510	2.16330	1.68650	HepG2	AKAP1
CSDE1	ENSG00000009307.11	8269.50940	10440.63930	-0.33630	7.40840	6.22150	HepG2	AKAP8L
CSDE1	ENSG00000009307.11	13538.94060	15136.70870	-0.16090	2.26010	1.62830	HepG2	AUH
CSDE1	ENSG00000009307.11	3229.73230	8860.79530	-1.45600	32.56340	29.09160	HepG2	BCCIP
CSDE1	ENSG00000009307.11	4706.03800	7699.82530	-0.71030	9.16080	7.65200	HepG2	BCLAF1
CSDE1	ENSG00000009307.11	9669.93910	11330.34220	-0.22860	1.88670	1.38450	HepG2	BOP1
CSDE1	ENSG00000009307.11	11697.44590	16702.70950	-0.51390	3.74130	2.59500	HepG2	CCAR1
CSDE1	ENSG00000009307.11	8141.77410	11833.16500	-0.53940	3.49580	2.62940	HepG2	CNOT7
CSDE1	ENSG00000009307.11	7736.23260	10401.92880	-0.42710	4.94640	4.05030	HepG2	CPSF6
CSDE1	ENSG00000009307.11	11109.20650	12434.59910	-0.16260	1.89720	1.34610	HepG2	CELF1
CSDE1	ENSG00000009307.11	7796.27570	13369.93590	-0.77810	53.93250	51.53380	HepG2	DAZAP1
CSDE1	ENSG00000009307.11	8651.91440	9610.95570	-0.15170	2.26520	1.50580	HepG2	DDX19B
CSDE1	ENSG00000009307.11	7636.36320	9749.89090	-0.35250	6.52010	4.83300	HepG2	DDX1
CSDE1	ENSG00000009307.11	7882.34510	9477.03360	-0.26580	2.54000	1.88710	HepG2	DDX21
CSDE1	ENSG00000009307.11	7774.13460	16106.46920	-1.05090	21.72780	20.15180	HepG2	DDX3X
CSDE1	ENSG00000009307.11	7050.16630	13834.37890	-0.97250	16.07030	14.74330	HepG2	DDX6
CSDE1	ENSG00000009307.11	7457.29280	9942.17780	-0.41490	11.22540	10.05140	HepG2	DKC1
CSDE1	ENSG00000009307.11	6839.41390	9560.32190	-0.48320	11.87560	10.50090	HepG2	DNAJC21
CSDE1	ENSG00000009307.11	7278.47270	9475.90650	-0.38060	13.10900	11.79710	HepG2	DNAJC2
CSDE1	ENSG00000009307.11	8226.23570	10044.03520	-0.28800	2.32360	1.47670	HepG2	EEF2
CSDE1	ENSG00000009307.11	8289.78330	13300.72490	-0.68210	9.92180	8.84040	HepG2	EIF2S1
CSDE1	ENSG00000009307.11	6586.97540	14699.54200	-1.15810	21.95690	20.19970	HepG2	EIF4A3
CSDE1	ENSG00000009307.11	8204.06500	12635.63580	-0.62310	10.09690	8.58920	HepG2	EIF4G2
CSDE1	ENSG00000009307.11	7881.99610	10154.65680	-0.36550	4.73970	3.65150	HepG2	EWSR1
CSDE1	ENSG00000009307.11	5513.08040	7286.93950	-0.40250	6.25720	4.46160	HepG2	FAM120A
CSDE1	ENSG00000009307.11	11701.19930	14829.17160	-0.34180	3.00260	2.28030	HepG2	FXR1
CSDE1	ENSG00000009307.11	9609.46800	13757.30960	-0.51770	5.41720	4.49900	HepG2	G3BP1
CSDE1	ENSG00000009307.11	7432.66540	9458.26890	-0.34770	2.54470	1.57320	HepG2	GNB2L1
CSDE1	ENSG00000009307.11	8868.53020	11791.55390	-0.41100	3.70530	2.97380	HepG2	GPKOW
CSDE1	ENSG00000009307.11	7134.19620	10953.84860	-0.61860	4.99840	3.50430	HepG2	GRSF1
CSDE1	ENSG00000009307.11	6426.96580	9651.91240	-0.58670	10.97550	9.82040	HepG2	HNRNPA1
CSDE1	ENSG00000009307.11	5081.50520	10735.96990	-1.07910	32.01820	29.96160	HepG2	HNRNPC
CSDE1	ENSG00000009307.11	10699.31490	11983.59750	-0.16350	2.04710	1.42340	HepG2	HNRNPF
CSDE1	ENSG00000009307.11	8262.95360	10664.99000	-0.36820	9.55760	8.48470	HepG2	HNRNPU
CSDE1	ENSG00000009307.11	9828.86270	11800.45490	-0.26370	3.03180	2.27630	HepG2	IGF2BP1
CSDE1	ENSG00000009307.11	8952.33810	13984.38820	-0.64350	9.08280	7.93730	HepG2	IGF2BP2
CSDE1	ENSG00000009307.11	7390.31360	10893.93390	-0.55980	30.70310	28.60840	HepG2	ILF2
CSDE1	ENSG00000009307.11	8578.27130	9499.42910	-0.14720	2.48340	1.51680	HepG2	KIF1C
CSDE1	ENSG00000009307.11	12187.42070	17628.38880	-0.53250	4.43410	3.37460	HepG2	LARP4
CSDE1	ENSG00000009307.11	5251.45400	9730.04870	-0.88970	19.16700	16.33960	HepG2	LIN28B
CSDE1	ENSG00000009307.11	5800.25430	14834.33950	-1.35480	34.87970	32.77070	HepG2	MAGOH
CSDE1	ENSG00000009307.11	9436.52840	14917.69900	-0.66070	8.18670	7.15030	HepG2	MATR3
CSDE1	ENSG00000009307.11	8283.97750	15269.36550	-0.88220	14.88520	13.49540	HepG2	NCBP2
CSDE1	ENSG00000009307.11	11297.98100	13257.61760	-0.23080	2.75670	1.99400	HepG2	NOL12
CSDE1	ENSG00000009307.11	12271.01930	9977.71870	0.29840	2.88340	2.11930	HepG2	NSUN2
CSDE1	ENSG00000009307.11	9760.85730	13542.14520	-0.47240	14.96630	13.73660	HepG2	PCBP1
CSDE1	ENSG00000009307.11	12531.16230	10238.70010	0.29140	5.85160	4.77050	HepG2	PRPF4
CSDE1	ENSG00000009307.11	9500.57770	13779.93380	-0.53650	18.24790	17.07610	HepG2	PTBP1
CSDE1	ENSG00000009307.11	8982.07260	12655.64210	-0.49470	8.00210	7.05920	HepG2	PUF60
CSDE1	ENSG00000009307.11	10231.10730	13424.74750	-0.39190	6.61890	5.59810	HepG2	PUM2
CSDE1	ENSG00000009307.11	8782.22920	10584.77260	-0.26930	6.09800	5.24700	HepG2	PUS1
CSDE1	ENSG00000009307.11	11962.57960	14923.38050	-0.31900	5.12620	4.31610	HepG2	QKI
CSDE1	ENSG00000009307.11	16264.56590	14525.54860	0.16300	1.92120	1.46860	HepG2	RBM22
CSDE1	ENSG00000009307.11	9976.39430	15335.49850	-0.62030	25.48410	24.17390	HepG2	NELFE
CSDE1	ENSG00000009307.11	10862.65600	14283.37690	-0.39500	11.20540	10.09230	HepG2	RECQL
CSDE1	ENSG00000009307.11	10615.10520	12908.78530	-0.28220	2.82840	2.13900	HepG2	RPLP0
CSDE1	ENSG00000009307.11	5306.61340	7933.76280	-0.58020	10.80490	9.68560	HepG2	RPS19
CSDE1	ENSG00000009307.11	8222.30770	10303.71350	-0.32550	2.73750	1.94040	HepG2	RPS2
CSDE1	ENSG00000009307.11	7280.80330	11881.16630	-0.70650	7.07800	5.80940	HepG2	RPS3A
CSDE1	ENSG00000009307.11	9224.38750	14346.16130	-0.63710	27.44180	25.91180	HepG2	SF3B4
CSDE1	ENSG00000009307.11	9599.11130	11075.85620	-0.20640	5.14850	4.31620	HepG2	SMN1
CSDE1	ENSG00000009307.11	12446.05050	16406.10320	-0.39850	13.42640	12.54380	HepG2	SRFBP1
CSDE1	ENSG00000009307.11	11195.59700	12495.72320	-0.15850	2.13160	1.57320	HepG2	SRSF5
CSDE1	ENSG00000009307.11	9768.80410	11773.37650	-0.26930	5.05560	4.15950	HepG2	SRSF7
CSDE1	ENSG00000009307.11	12730.42570	14244.43510	-0.16210	2.42460	1.93820	HepG2	SSB
CSDE1	ENSG00000009307.11	11893.39170	14210.97700	-0.25680	6.47010	5.58930	HepG2	SUCLG1
CSDE1	ENSG00000009307.11	5985.10340	8939.10410	-0.57880	10.42020	8.70450	HepG2	SUPT6H
CSDE1	ENSG00000009307.11	16771.90850	13460.26500	0.31720	5.68800	4.93340	HepG2	TAF15
CSDE1	ENSG00000009307.11	9013.12190	10967.66010	-0.28320	2.56370	1.86170	HepG2	TARDBP
CSDE1	ENSG00000009307.11	8471.21980	13432.47280	-0.66510	3.13730	2.00150	HepG2	TBRG4
CSDE1	ENSG00000009307.11	3833.55630	10363.02360	-1.43470	72.99380	71.07980	HepG2	TIAL1
CSDE1	ENSG00000009307.11	8473.62300	10455.66900	-0.30320	6.49970	5.70100	HepG2	TRIM56
CSDE1	ENSG00000009307.11	8056.68920	11812.73770	-0.55210	22.41230	20.80070	HepG2	UPF1
CSDE1	ENSG00000009307.11	5501.08740	7942.69850	-0.52990	3.61180	2.45350	HepG2	UPF2
CSDE1	ENSG00000009307.11	9525.84520	12141.76720	-0.35010	7.60410	5.97470	HepG2	UTP18
CSDE1	ENSG00000009307.11	9552.06920	11404.71880	-0.25570	5.54970	4.74970	HepG2	UTP3
CSDE1	ENSG00000009307.11	6502.98380	8537.42090	-0.39270	3.36380	2.56900	HepG2	XRN2
CSDE1	ENSG00000009307.11	8818.18750	10104.18840	-0.19640	3.91480	3.13940	HepG2	ZC3H8
CSDE1	ENSG00000009307.11	11702.85090	12991.73610	-0.15070	2.90540	2.34850	HepG2	ZNF622
CSDE1	ENSG00000009307.11	22797.12040	20458.55510	0.15600	2.44850	1.90930	K562	AGGF1
CSDE1	ENSG00000009307.11	11397.32630	13318.54830	-0.22470	3.06290	1.47220	K562	AKAP1
CSDE1	ENSG00000009307.11	26941.43670	22481.07810	0.26100	2.52030	1.58990	K562	AKAP8
CSDE1	ENSG00000009307.11	24671.93210	21288.10770	0.21270	1.86000	1.31990	K562	AKAP8L
CSDE1	ENSG00000009307.11	16607.09080	24589.71300	-0.56630	9.58960	8.60190	K562	AQR
CSDE1	ENSG00000009307.11	26207.07850	22336.45120	0.23050	3.23830	2.24570	K562	ATP5C1
CSDE1	ENSG00000009307.11	6933.56270	15267.83200	-1.13880	66.90240	62.82810	K562	BCCIP
CSDE1	ENSG00000009307.11	11063.72170	14754.54730	-0.41530	13.20980	11.07040	K562	BCLAF1
CSDE1	ENSG00000009307.11	22405.78520	26382.97650	-0.23570	3.68230	2.39720	K562	CPEB4
CSDE1	ENSG00000009307.11	12319.54760	17325.87050	-0.49200	9.15900	7.71290	K562	CPSF6
CSDE1	ENSG00000009307.11	8911.09220	11193.52370	-0.32900	6.22810	4.55530	K562	CSTF2
CSDE1	ENSG00000009307.11	15399.21410	17439.29360	-0.17950	2.46110	1.32250	K562	DDX21
CSDE1	ENSG00000009307.11	24107.76810	27301.11340	-0.17950	2.69900	2.05460	K562	DDX47
CSDE1	ENSG00000009307.11	11337.14450	13682.56910	-0.27130	3.95100	2.30420	K562	DDX6
CSDE1	ENSG00000009307.11	15797.77210	20807.61450	-0.39740	9.05900	7.87140	K562	EIF2S2
CSDE1	ENSG00000009307.11	8129.84950	14099.42670	-0.79430	17.37230	15.16680	K562	EIF4A3
CSDE1	ENSG00000009307.11	11906.14330	14984.35930	-0.33180	4.26860	2.65230	K562	EXOSC5
CSDE1	ENSG00000009307.11	13457.87730	17628.74810	-0.38950	4.38050	3.30330	K562	FMR1
CSDE1	ENSG00000009307.11	16917.57940	14662.83240	0.20630	3.01240	2.38470	K562	FXR1
CSDE1	ENSG00000009307.11	22227.32040	16156.50840	0.46010	3.53420	2.71320	K562	G3BP2
CSDE1	ENSG00000009307.11	12768.80370	16541.90690	-0.37350	4.75000	3.71410	K562	GPKOW
CSDE1	ENSG00000009307.11	14509.31810	27729.13380	-0.93440	28.89940	26.36150	K562	GRSF1
CSDE1	ENSG00000009307.11	6209.51070	14780.55850	-1.25110	18.17200	16.72800	K562	HNRNPC
CSDE1	ENSG00000009307.11	15780.52030	19281.86630	-0.28910	4.51350	3.36570	K562	HNRNPU
CSDE1	ENSG00000009307.11	24626.05900	29325.19220	-0.25200	2.22390	1.50750	K562	HSPD1
CSDE1	ENSG00000009307.11	27224.57640	22591.81450	0.26900	2.73550	1.91460	K562	KIF1C
CSDE1	ENSG00000009307.11	8246.94410	14986.15790	-0.86170	10.98550	7.96470	K562	LIN28B
CSDE1	ENSG00000009307.11	12231.15510	18707.38230	-0.61300	11.83570	10.00750	K562	MAGOH
CSDE1	ENSG00000009307.11	15707.40810	18669.96900	-0.24930	2.58740	1.69770	K562	MATR3
CSDE1	ENSG00000009307.11	12625.05900	16146.76210	-0.35500	4.60960	3.45820	K562	METAP2
CSDE1	ENSG00000009307.11	16026.02660	19940.90250	-0.31530	8.37130	7.03510	K562	MTPAP
CSDE1	ENSG00000009307.11	23289.58100	17739.48770	0.39260	2.60650	1.75530	K562	NAA15
CSDE1	ENSG00000009307.11	17703.90960	22156.79710	-0.32370	11.21070	9.84880	K562	NSUN2
CSDE1	ENSG00000009307.11	13674.87850	19060.08890	-0.47900	5.25300	4.10350	K562	PCBP3
CSDE1	ENSG00000009307.11	10504.86860	14620.18670	-0.47690	8.96670	7.55630	K562	POLR2G
CSDE1	ENSG00000009307.11	19388.58350	24554.34440	-0.34080	3.48610	2.54770	K562	PPIG
CSDE1	ENSG00000009307.11	9600.58730	13251.70500	-0.46500	3.86740	2.77190	K562	PSIP1
CSDE1	ENSG00000009307.11	27513.37220	38151.67620	-0.47160	11.35920	9.40850	K562	PUM2
CSDE1	ENSG00000009307.11	37471.83700	21111.57890	0.82770	18.07520	16.72210	K562	PUS1
CSDE1	ENSG00000009307.11	27749.69600	20570.37030	0.43180	9.72400	8.63870	K562	RBM15
CSDE1	ENSG00000009307.11	13835.89940	17429.71200	-0.33310	3.46940	2.52200	K562	RBM22
CSDE1	ENSG00000009307.11	18275.36620	15328.60200	0.25360	2.62640	1.33750	K562	RBM25
CSDE1	ENSG00000009307.11	14026.21500	18341.53160	-0.38700	3.98560	2.63950	K562	NELFE
CSDE1	ENSG00000009307.11	6892.71840	13252.49800	-0.94310	11.39280	9.70690	K562	RPS19
CSDE1	ENSG00000009307.11	18682.97760	21862.11710	-0.22670	3.39730	2.49870	K562	SF3A3
CSDE1	ENSG00000009307.11	12761.22030	15732.07020	-0.30190	2.23970	1.37480	K562	SF3B1
CSDE1	ENSG00000009307.11	8250.05110	11458.93800	-0.47400	5.03230	3.52370	K562	SRFBP1
CSDE1	ENSG00000009307.11	13828.86680	22398.12190	-0.69570	47.11460	44.26940	K562	SRPK2
CSDE1	ENSG00000009307.11	11438.03580	15352.32250	-0.42460	6.77240	5.00280	K562	SRSF4
CSDE1	ENSG00000009307.11	8983.16880	12598.14450	-0.48790	4.05510	2.80680	K562	SUPV3L1
CSDE1	ENSG00000009307.11	17854.18570	14663.80830	0.28390	3.75150	2.79480	K562	SYNCRIP
CSDE1	ENSG00000009307.11	10611.96190	18033.11470	-0.76500	13.96580	12.14660	K562	TARDBP
CSDE1	ENSG00000009307.11	14459.45190	17394.75060	-0.26660	3.11470	2.23790	K562	TIA1
CSDE1	ENSG00000009307.11	8766.59070	12746.28270	-0.54000	4.67690	3.43450	K562	TIAL1
CSDE1	ENSG00000009307.11	10956.30720	13537.97520	-0.30530	2.34070	1.48180	K562	TRIM56
CSDE1	ENSG00000009307.11	20569.96940	15665.24830	0.39290	3.38940	2.15190	K562	U2AF1
CSDE1	ENSG00000009307.11	20566.54840	16177.37150	0.34620	5.24600	4.14620	K562	U2AF2
CSDE1	ENSG00000009307.11	14520.65640	23493.26920	-0.69410	36.71550	34.45080	K562	UPF1
CSDE1	ENSG00000009307.11	16259.30170	20102.53420	-0.30610	3.76230	2.74090	K562	WDR3
CSDE1	ENSG00000009307.11	23944.61190	20903.71400	0.19580	3.86610	2.87680	K562	WDR43
CSDE1	ENSG00000009307.11	23564.81070	29134.24340	-0.30610	3.57180	2.09330	K562	WRN
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CSDE1 is not available on ENCORE database.

18 RBPs can affect the splicing of CSDE1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	0.07400	0.00003	0.02933	included	K562	TAF15
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	0.17900	0.00000	0.00000	included	K562	SRSF1
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	-0.05600	0.00004	0.00154	excluded	K562	SF3B4
SE	CSDE1	ENSG00000009307.11	chr1	-	115292769	115292828			115282312	115282511	115300545	115300648	0.09200	0.00131	0.07376	included	HepG2	RBM22
SE	CSDE1	ENSG00000009307.11	chr1	-	115272878	115273043			115269603	115269711	115275224	115275437	-0.06000	0.00000	0.00005	excluded	HepG2	U2AF1
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	-0.05800	0.00000	0.00004	excluded	HepG2	U2AF1
SE	CSDE1	ENSG00000009307.11	chr1	-	115282319	115282511			115280583	115280693	115292441	115292525	0.10900	0.00000	0.00002	included	HepG2	U2AF2
SE	CSDE1	ENSG00000009307.11	chr1	-	115282312	115282346			115280583	115280693	115292441	115292828	-0.12300	0.00000	0.00000	excluded	K562	AQR
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279500	115280583	115280693	-0.36600	0.00000	0.00000	excluded	K562	AQR
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	-0.05700	0.00013	0.01809	excluded	HepG2	SRSF7
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	0.05700	0.00118	0.08211	included	K562	SUPV3L1
SE	CSDE1	ENSG00000009307.11	chr1	-	115268940	115269007			115267841	115267954	115269603	115269711	-0.05900	0.00000	0.00070	excluded	K562	SUPV3L1
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	0.05100	0.00219	0.09339	included	HepG2	PTBP1
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	0.08000	0.00001	0.00701	included	K562	UCHL5
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	0.05200	0.00007	0.01408	included	HepG2	LARP4
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	0.10200	0.00000	0.00000	included	HepG2	SRSF1
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	-0.12500	0.00000	0.00001	excluded	K562	FXR2
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	0.07100	0.00015	0.00844	included	K562	TARDBP
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	0.08400	0.00000	0.00022	included	K562	HNRNPU
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	0.06000	0.00010	0.01681	included	K562	CPSF6
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	0.06900	0.00004	0.01461	included	HepG2	DDX55
SE	CSDE1	ENSG00000009307.11	chr1	-	115280091	115280184			115279378	115279476	115280583	115280693	0.08900	0.00002	0.00150	included	HepG2	HNRNPU
A3SS	CSDE1	ENSG00000009307.11	chr1	-	115261233	115261446			115261233	115261366	115262199	115262439	0.06100	0.00000	0.00000	longer	K562	AQR
A3SS	CSDE1	ENSG00000009307.11	chr1	-	115279378	115279562			115279378	115279476	115280583	115280725	0.05200	0.00000	0.00000	longer	K562	AQR
A3SS	CSDE1	ENSG00000009307.11	chr1	-	115273128	115273327			115273128	115273269	115275224	115275437	0.05400	0.00000	0.00000	longer	K562	AQR
A3SS	CSDE1	ENSG00000009307.11	chr1	-	115275353	115275489			115275353	115275463	115276352	115276471	-0.26700	0.00108	0.00747	shorter	K562	AQR
MXE	CSDE1	ENSG00000009307.11	chr1	-	115269603	115269711	115272878	115273043	115268831	115269007	115273128	115273269	0.13500	0.00185	0.02791	1included	K562	DROSHA
MXE	CSDE1	ENSG00000009307.11	chr1	-	115272878	115273043	115273128	115273269	115269603	115269711	115275224	115275437	0.14300	0.00000	0.00000	1included	K562	DROSHA
MXE	CSDE1	ENSG00000009307.11	chr1	-	115268831	115269007	115269603	115269711	115267841	115267954	115272878	115273043	-0.18900	0.00224	0.03171	2included	K562	DROSHA
MXE	CSDE1	ENSG00000009307.11	chr1	-	115282312	115282346	115292441	115292566	115280583	115280693	115292769	115292828	0.07100	0.00000	0.00000	1included	K562	AQR
MXE	CSDE1	ENSG00000009307.11	chr1	-	115279632	115279729	115280091	115280236	115279378	115279476	115280583	115280693	-0.07400	0.00000	0.00004	2included	K562	AQR
MXE	CSDE1	ENSG00000009307.11	chr1	-	115279546	115279729	115280091	115280236	115279378	115279476	115280583	115280693	-0.07700	0.00000	0.00002	2included	K562	AQR
MXE	CSDE1	ENSG00000009307.11	chr1	-	115262199	115262254	115266503	115266623	115261233	115261366	115267841	115267954	0.05300	0.00129	0.04447	1included	K562	TAF15
MXE	CSDE1	ENSG00000009307.11	chr1	-	115272878	115273043	115273128	115273269	115269603	115269711	115275224	115275437	-0.13700	0.00000	0.00023	2included	HepG2	SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
CSDE1	Product_ID: A303-160A Lot_ID: 1 Source: Bethyl Labs Target Name: CSDE1-human
CSDE1	Product_ID: A303-158A Lot_ID: 1 Source: Bethyl Labs Target Name: CSDE1-human

CSDE1

General Information

Functions

Localization

Domains (AlphaFold: CSDE1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CSDE1 is not avaliable on ENCORE database.

41 proteins are bound to CSDE1 RNA:

eCLIP assay for CSDE1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CSDE1 is not available on ENCORE database.

113 RBPs can affect the gene expression of CSDE1 :

The Knockdown/knockout RNA-Seq assay for CSDE1 is not available on ENCORE database.

18 RBPs can affect the splicing of CSDE1 :

The Knockdown/knockout RNA-Seq assay for CSDE1 is not avaliable on ENCORE database.