CCT4

General Information

Gene Name       : CCT4
Gene ID             : ENSG00000115484.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CCT4)


Antibody Validation

 View validation images for all CCT4 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCT4ENSG00000115484.14143.60135.34139.47ENCSR000AEF
HepG2CCT4ENSG00000115484.14157.72239.74198.73ENCSR985KAT
K562CCT4ENSG00000115484.14220.60203.59212.09ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq CCT4-BGKcLV28-K562ENCSR995XEPCCT4K562ReleasedENCSR220DTX   CRISPRKD% = 60.9,59.4






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
CCT4ENCAB174YJKA304-725A1Released, ENCODE4BGKcLV28-7, Released, ENCODE4
CCT4ENCAB744IBMA304-726A1Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
CCT4K562CRISPRENCSR995XEPENCSR220DTXCCT4-BGKcLV28-7,CCT4-BGKcLV28-8NT-BGKcLV28-1,NT-BGKcLV28-260.9,59.4ReleasedENCODE4
CCT4HepG2CRISPRBGHcLV27-55,BGHcLV27-56BGHcLV27-1,BGHcLV27-232.5,34.3NotSatisfiedENCODE4
CCT4HepG2CRISPRBGHcLV36-9,BGHcLV36-10BGHcLV36-1,BGHcLV36-20.0,0.0NotSatisfiedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
CCT4Product_ID: A304-725A
Lot_ID: 1
Source: Bethyl Labs
Target Name: CCT4-human		 Bethyl_A304-725A_1_CCT4.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the CCT4 specific antibody, A304-725A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the CCT4-specific antibody, A304-725A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
 CCT4-K562-CRISPR-A304-725A.png<br>Caption: Western blot following CRISPR against CCT4 in K562 whole cell lysate using CCT4 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against CCT4. CCT4 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
CCT4Product_ID: A304-726A
Lot_ID: 1
Source: Bethyl Labs
Target Name: CCT4-human		 Bethyl_A304-726A_1_CCT4.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the CCT4 specific antibody, A304-726A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the CCT4-specific antibody, A304-726A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.








RNA Targets

  • eCLIP assay for CCT4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCT4 RNA is bound by 29 proteins.  







eCLIP assay for CCT4 is not avaliable on ENCORE database.





29 proteins are bound to CCT4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr26209575062095806-3'-UTR,intron-Distal5.1308433.87345K562LIN28B
chr26209567562095753-3'-UTR,intron-Distal,intron-Proximal4.9473722.62997K562NOLC1
chr26209575362095803-3'-UTR,intron-Distal3.912885.81184K562NOLC1
chr26209582562095837-3'-UTR,CDS,intron-Distal4.172485.31144HepG2SUB1
chr26209578262095831-3'-UTR,CDS,intron-Distal4.7644267.52863K562PABPC4
chr26209576162095782-3'-UTR,intron-Distal3.578845.93417K562PABPC4
chr26209556262095650-3'-UTR,intron-Distal,intron-Proximal,polyA_site3.4958412.60255K562QKI
chr26209561162095655-3'-UTR,intron-Distal,intron-Proximal5.5697782.96920K562PABPC4
chr26209566462095724-3'-UTR,intron-Distal,intron-Proximal4.2649735.42605K562PABPC4
chr26209566562095740-3'-UTR,intron-Distal,intron-Proximal6.7059372.68942HepG2SUB1
chr26209574162095797-3'-UTR,intron-Distal,intron-Proximal5.6172621.06561HepG2SUB1
chr26211217862112226-5'-UTR,CDS,intron-Distal,intron-Proximal5.1711021.31612K562U2AF2
chr26211563562115692-5'-UTR,CDS,intron-Distal,intron-Proximal3.5033641.06530K562DDX3X
chr26210603162106140-5'-UTR,CDS,intron-Distal3.190579.21862HepG2PPIG
chr26211551562115530-5'-UTR,CDS,intron-Distal3.241593.99718K562FXR2
chr26211567462115680-5'-UTR,intron-Distal,intron-Proximal4.4747887.32918K562YBX3
chr26211059362110601-5'-UTR,CDS,intron-Distal,intron-Proximal3.1618513.56615K562YBX3
chr26211533562115407-5'-UTR,intron-Distal,intron-Proximal3.961323.66257HepG2U2AF1
chr26211525062115274-5'-UTR,intron-Distal5.144267.65809K562PABPC4
chr26211551562115521-5'-UTR,CDS,intron-Distal3.397235.59577K562SND1
chr26211557562115630-5'-UTR,CDS,intron-Distal,intron-Proximal3.6407214.70812K562RPS3
chr26211059362110608-5'-UTR,CDS,intron-Distal,intron-Proximal3.947939.77514K562LIN28B
chr26210610662106144-5'-UTR,CDS,intron-Distal3.8659210.41974HepG2G3BP1
chr26211569262115763-5'-UTR,intron-Distal,intron-Proximal3.6986834.01458K562DDX3X
chr26211570162115717-5'-UTR,intron-Distal,intron-Proximal4.6526986.33672K562YBX3
chr26211553062115577-5'-UTR,CDS,intron-Distal3.334705.95144K562FXR2
chr26211547362115519-5'-UTR,CDS,intron-Distal,intron-Proximal3.348135.63071HepG2AQR
chr26211558862115617-5'-UTR,CDS,intron-Distal,intron-Proximal3.0358016.61815K562YBX3
chr26211540362115525-5'-UTR,CDS,intron-Distal,intron-Proximal3.9870918.43638HepG2EFTUD2
chr26211561762115636-5'-UTR,CDS,intron-Distal,intron-Proximal3.0721716.41169K562YBX3
chr26211567162115713-5'-UTR,intron-Distal,intron-Proximal3.1634513.90992HepG2SUB1
chr26211554862115639-5'-UTR,CDS,intron-Distal,intron-Proximal4.5748424.32677HepG2RPS3
chr26211217062112230-5'-UTR,CDS,intron-Distal,intron-Proximal3.403219.35995K562SF3B4
chr26211211662112225-5'-UTR,CDS,intron-Distal,intron-Proximal4.557609.68645HepG2AQR
chr26211059362110619-5'-UTR,CDS,intron-Distal,intron-Proximal3.150394.44734K562SND1
chr26211567062115674-5'-UTR,intron-Distal,intron-Proximal3.9739855.19412K562YBX3
chr26211060162110615-5'-UTR,CDS,intron-Distal3.1086414.07192K562YBX3
chr26211217762112227-5'-UTR,CDS,intron-Distal,intron-Proximal4.8266424.41962HepG2U2AF2
chr26211216362112222-5'-UTR,CDS,intron-Distal,intron-Proximal4.260149.03062K562AQR
chr26211536062115416-5'-UTR,intron-Distal,intron-Proximal3.341006.51847HepG2U2AF2
chr26211538862115505-5'-UTR,intron-Distal,intron-Proximal3.106995.66748HepG2RBM22
chr26211217462112227-5'-UTR,CDS,intron-Distal,intron-Proximal3.582599.29870K562U2AF1
chr26211536962115441-5'-UTR,intron-Distal,intron-Proximal3.695564.33555K562EFTUD2
chr26210606262106145-5'-UTR,CDS,intron-Distal3.854375.78778K562IGF2BP1
chr26211555062115573-5'-UTR,CDS,intron-Distal3.0491213.11885K562YBX3
chr26211565362115712-5'-UTR,intron-Distal,intron-Proximal4.6313313.07964K562GEMIN5
chr26211543862115538-5'-UTR,CDS,intron-Distal,intron-Proximal4.6332012.49465HepG2PRPF8
chr26211556162115653-5'-UTR,CDS,intron-Distal,intron-Proximal3.4418327.43490K562GEMIN5
chr26211549462115517-5'-UTR,CDS,intron-Distal3.8202112.60688K562AQR
chr26211217262112181-5'-UTR,CDS,intron-Distal4.907847.38783HepG2G3BP1
chr26211215462112218-5'-UTR,CDS,intron-Distal,intron-Proximal3.901035.32169K562EFTUD2
chr26210751562107530-CDS,intron-Distal,intron-Proximal4.7964822.21353K562LIN28B
chr26210405962104085-CDS,intron-Distal6.3543122.81538K562LIN28B
chr26210600362106045-CDS,intron-Distal,intron-Proximal3.016589.53664K562PUM2
chr26210752462107580-CDS,intron-Distal,intron-Proximal3.507524.40430HepG2AQR
chr26210406062104101-CDS,intron-Distal4.571434.01886HepG2LIN28B
chr26210600562106033-CDS,intron-Distal4.322739.40402HepG2SUB1
chr26209962462099673-CDS,intron-Distal3.330916.86854K562SND1
chr26210452762104540-CDS,intron-Distal,intron-Proximal3.320697.67407K562LIN28B
chr26210013662100216-CDS,intron-Distal,intron-Proximal3.697443.16983HepG2FUS
chr26210751562107590-CDS,intron-Distal,intron-Proximal3.270925.09479K562SF3B4
chr26210408562104107-CDS,intron-Distal6.3168921.08723K562LIN28B
chr26210742262107438-CDS,intron-Distal3.343626.40070HepG2G3BP1
chr26209941762099443-CDS,intron-Distal4.1367916.85244K562LIN28B
chr26209968562099747-CDS,intron-Distal,intron-Proximal3.682499.82901HepG2AQR
chr26209961762099683-CDS,intron-Distal4.4192810.05254K562NOLC1
chr26210330862103353-CDS,intron-Distal5.3102540.50801K562LIN28B
chr26209942362099451-CDS,intron-Distal4.8178014.44090HepG2SUB1
chr26210409562104184-CDS,intron-Distal,intron-Proximal4.2916719.75518HepG2G3BP1
chr26210749662107504-CDS,intron-Distal6.7755260.55832K562LIN28B
chr26209662862096669-CDS,intron-Distal5.451948.10821K562RPS3
chr26209969762099722-CDS,intron-Distal3.711447.39309HepG2G3BP1
chr26209941762099448-CDS,intron-Distal3.564603.96176HepG2LIN28B
chr26209938862099417-CDS,intron-Distal4.2664219.00126K562LIN28B
chr26209959262099612-CDS,intron-Distal,intron-Proximal4.7237613.05026HepG2SUB1
chr26210330662103353-CDS,intron-Distal3.358777.11912K562RPS3
chr26209942462099452-CDS,intron-Distal,intron-Proximal3.543967.32318K562NOLC1
chr26210748762107496-CDS,intron-Distal6.8356192.05287K562LIN28B
chr26209661162096638-CDS,intron-Distal3.985759.54710K562SND1
chr26210744862107464-CDS,intron-Distal5.1820140.53805K562LIN28B
chr26209961262099678-CDS,intron-Distal5.2284618.64413HepG2SUB1
chr26210746562107471-CDS,intron-Distal3.3310316.69956K562YBX3
chr26209939262099417-CDS,intron-Distal4.167653.54620HepG2LIN28B
chr26210330062103342-CDS,intron-Distal3.246876.76286HepG2G3BP1
chr26209968962099722-CDS,intron-Distal3.584778.08742K562LIN28B
chr26210330962103354-CDS,intron-Distal3.071655.38577HepG2LIN28B
chr26209924662099295-CDS,intron-Distal3.2638012.39095K562YBX3
chr26210414162104187-CDS,intron-Distal,intron-Proximal4.5233424.16622K562LIN28B
chr26210455862104621-CDS,intron-Distal4.0177014.87095HepG2G3BP1
chr26210745662107507-CDS,intron-Distal4.326384.63912HepG2LIN28B
chr26209959162099617-CDS,intron-Distal,intron-Proximal4.163098.93021K562NOLC1
chr26209662862096688-CDS,intron-Distal4.189043.33981K562ZC3H8
chr26210412562104172-CDS,intron-Distal,intron-Proximal3.019689.23816K562RPS3
chr26209666262096689-CDS,intron-Distal,intron-Proximal3.330993.19473K562APOBEC3C
chr26210750462107515-CDS,intron-Distal5.8652335.10477K562LIN28B
chr26210746462107487-CDS,intron-Distal6.2071967.10975K562LIN28B
chr26209901862099104-intron-Distal4.278534.37030K562KHSRP
chr26210755162107667-intron-Distal,intron-Proximal3.470034.76825K562KHSRP
chr26211546362115494-intron-Distal,intron-Proximal4.1956514.93802K562AQR
chr26211372962113792-intron-Distal3.154763.51682HepG2RBFOX2
chr26209911262099165-intron-Distal,intron-Proximal3.281203.54718K562PRPF8
chr26211087262110928-intron-Distal3.474575.04010K562TARDBP
chr26210586762105982-intron-Distal,intron-Proximal4.235173.92684K562KHSRP
chr26211546762115516-intron-Distal,intron-Proximal4.062333.81597K562RBM15
chr26211076462110868-intron-Distal,intron-Proximal3.368263.29251K562KHSRP
chr26211211262112138-intron-Distal,intron-Proximal4.064383.49003K562PRPF8
chr26209910462099174-intron-Distal,intron-Proximal3.689606.04886K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCT4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCT4 is not available on ENCORE database.

  • 107 RBPs can affect the levels of CCT4.  








The Knockdown/knockout RNA-Seq assay for CCT4 is not available on ENCORE database.





107 RBPs can affect the gene expression of CCT4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCT4ENSG00000115484.104763.239606147.37850-0.368003.207302.19120HepG2ABCF1
CCT4ENSG00000115484.1013378.511809149.710300.548005.630604.90320HepG2AKAP1
CCT4ENSG00000115484.103119.447304793.90510-0.619906.614505.28980HepG2BCLAF1
CCT4ENSG00000115484.103437.894604605.64240-0.421905.403203.71440HepG2BUD13
CCT4ENSG00000115484.103697.762007969.37100-1.1078015.2061013.07300HepG2CCAR1
CCT4ENSG00000115484.105440.520207192.64090-0.402803.933403.02070HepG2CIRBP
CCT4ENSG00000115484.103069.689605552.92530-0.8552016.6779015.15710HepG2CPSF6
CCT4ENSG00000115484.105599.521204758.499900.234702.995801.93480HepG2YBX3
CCT4ENSG00000115484.108778.953607304.699100.265104.285803.51680HepG2CELF1
CCT4ENSG00000115484.105149.696707854.45810-0.6090030.3271028.37290HepG2DAZAP1
CCT4ENSG00000115484.103424.705504239.61490-0.308002.994202.29160HepG2DDX21
CCT4ENSG00000115484.103715.339004506.63630-0.278602.519901.58330HepG2DHX30
CCT4ENSG00000115484.103605.621004950.98590-0.4575011.5729010.38600HepG2DKC1
CCT4ENSG00000115484.104001.503204672.52680-0.223702.715102.01630HepG2DNAJC21
CCT4ENSG00000115484.103711.416004631.21400-0.319407.898206.86780HepG2DNAJC2
CCT4ENSG00000115484.103122.374904202.76180-0.428704.347403.21720HepG2EEF2
CCT4ENSG00000115484.104606.343807237.99490-0.652008.779107.76210HepG2EIF2S1
CCT4ENSG00000115484.104084.798807998.96470-0.9695015.4189013.92560HepG2EIF4A3
CCT4ENSG00000115484.105637.364607422.87920-0.397002.890202.05950HepG2EIF4G2
CCT4ENSG00000115484.104391.764105325.09450-0.278002.404101.38530HepG2ESF1
CCT4ENSG00000115484.107454.704309671.44470-0.375609.545308.53830HepG2ETF1
CCT4ENSG00000115484.103847.509404562.27040-0.245802.172501.46830HepG2FUBP3
CCT4ENSG00000115484.106010.465008070.22800-0.425104.199003.35980HepG2FXR1
CCT4ENSG00000115484.104288.552307486.52610-0.8038011.7134010.39110HepG2G3BP1
CCT4ENSG00000115484.105383.477007947.63770-0.562007.162905.71640HepG2G3BP2
CCT4ENSG00000115484.102426.344003037.59110-0.324102.461601.62160HepG2GEMIN5
CCT4ENSG00000115484.103500.906204633.95410-0.404503.522102.36510HepG2GNB2L1
CCT4ENSG00000115484.104678.270306294.30730-0.428103.882803.13580HepG2GPKOW
CCT4ENSG00000115484.102004.256504717.29030-1.2349037.7598035.91470HepG2HNRNPA1
CCT4ENSG00000115484.102903.913105247.09580-0.8535018.8141017.17260HepG2HNRNPC
CCT4ENSG00000115484.104553.306105950.87820-0.386208.313907.15630HepG2HNRNPF
CCT4ENSG00000115484.105890.794007154.84450-0.280507.430306.37360HepG2HNRNPL
CCT4ENSG00000115484.103640.587206006.80650-0.7224011.6612010.48250HepG2HNRNPLL
CCT4ENSG00000115484.104602.009105212.40640-0.179701.849901.34510HepG2HNRNPU
CCT4ENSG00000115484.104010.354405859.94050-0.5472010.339509.02520HepG2IGF2BP1
CCT4ENSG00000115484.104586.834707609.96360-0.7304011.002509.75170HepG2IGF2BP2
CCT4ENSG00000115484.104517.376205324.30360-0.237105.431104.43160HepG2ILF2
CCT4ENSG00000115484.105063.179007654.18580-0.596205.439903.98870HepG2KHSRP
CCT4ENSG00000115484.104021.804604730.37500-0.234104.618503.30950HepG2KIF1C
CCT4ENSG00000115484.103521.150504828.51710-0.455503.167701.82520HepG2KRR1
CCT4ENSG00000115484.105137.148908073.04370-0.652108.729407.57870HepG2MAGOH
CCT4ENSG00000115484.103659.984006126.96240-0.743306.629905.09110HepG2MTPAP
CCT4ENSG00000115484.103268.311104218.43720-0.368204.147502.66270HepG2NAA15
CCT4ENSG00000115484.105897.877808309.57450-0.494605.046904.20270HepG2NCBP2
CCT4ENSG00000115484.105068.450107400.45620-0.546106.143805.07980HepG2PABPC4
CCT4ENSG00000115484.103781.085705159.41190-0.4484011.066709.56270HepG2PARN
CCT4ENSG00000115484.105565.956707585.40660-0.4466012.4458011.30680HepG2PCBP1
CCT4ENSG00000115484.103128.137704649.05310-0.5716013.7773012.20960HepG2PPIL4
CCT4ENSG00000115484.105352.878807718.43770-0.5280016.9598015.82620HepG2PTBP1
CCT4ENSG00000115484.105432.072607434.73360-0.452805.772004.95280HepG2PUF60
CCT4ENSG00000115484.105324.742607886.51900-0.5667012.5351011.16870HepG2PUM2
CCT4ENSG00000115484.104126.970705271.02930-0.353008.546107.56440HepG2PUS1
CCT4ENSG00000115484.105483.574808359.25250-0.6083015.8998014.57970HepG2QKI
CCT4ENSG00000115484.107601.427606369.669500.255002.993902.10390HepG2RBM15
CCT4ENSG00000115484.109897.305408083.521400.292004.784304.14970HepG2RBM22
CCT4ENSG00000115484.106047.339407586.56120-0.327103.972203.17550HepG2RBM25
CCT4ENSG00000115484.106222.426208589.87770-0.4652013.6415012.60930HepG2NELFE
CCT4ENSG00000115484.105555.846108000.30800-0.5260017.5344016.19970HepG2RECQL
CCT4ENSG00000115484.104905.109806410.19010-0.386104.343503.51720HepG2RPLP0
CCT4ENSG00000115484.103395.221404631.29860-0.447902.635801.71130HepG2RPS10
CCT4ENSG00000115484.104104.757005048.89950-0.298702.563101.79130HepG2RPS2
CCT4ENSG00000115484.103248.601005544.28650-0.771208.020606.67760HepG2RPS3A
CCT4ENSG00000115484.103719.208904641.88870-0.319707.251006.27840HepG2SAFB2
CCT4ENSG00000115484.104129.586405945.34040-0.525807.530706.41610HepG2SF3B1
CCT4ENSG00000115484.107085.953908035.88480-0.181502.680902.09780HepG2SF3B4
CCT4ENSG00000115484.105445.831607128.67410-0.3885012.8326011.51150HepG2SLBP
CCT4ENSG00000115484.104260.300805413.24410-0.3455010.564809.43920HepG2SMN1
CCT4ENSG00000115484.1010723.549609130.010200.232004.845504.23510HepG2SRFBP1
CCT4ENSG00000115484.103163.007806397.80800-1.0163015.2924012.86290HepG2SRSF3
CCT4ENSG00000115484.106052.327407340.67180-0.278405.324304.49670HepG2SRSF5
CCT4ENSG00000115484.104520.055805846.45720-0.371207.875806.80130HepG2SRSF7
CCT4ENSG00000115484.105065.333106823.86370-0.4299012.5716011.54550HepG2SRSF9
CCT4ENSG00000115484.105186.007307926.95870-0.6121024.4165023.22960HepG2SSB
CCT4ENSG00000115484.106790.770308348.40440-0.297907.699806.74770HepG2SUCLG1
CCT4ENSG00000115484.103459.689005399.65760-0.642206.893005.90190HepG2SUPV3L1
CCT4ENSG00000115484.105250.798407539.22100-0.5219013.0523011.97060HepG2TAF15
CCT4ENSG00000115484.103543.977805855.74750-0.7245012.9922011.60130HepG2TARDBP
CCT4ENSG00000115484.104782.769806927.51090-0.534509.847608.29050HepG2TIA1
CCT4ENSG00000115484.102413.292305064.89240-1.0695038.1843036.72140HepG2TIAL1
CCT4ENSG00000115484.104333.276105110.09840-0.237903.782103.14500HepG2TRIM56
CCT4ENSG00000115484.104991.707707263.35900-0.5411010.020008.16260HepG2TUFM
CCT4ENSG00000115484.106353.779505309.902100.258802.029301.48220HepG2U2AF1
CCT4ENSG00000115484.103536.342604982.67000-0.4947015.1885013.80440HepG2UPF1
CCT4ENSG00000115484.103615.930804945.16570-0.451702.675401.68750HepG2UPF2
CCT4ENSG00000115484.104316.981805121.53180-0.246603.527402.35900HepG2UTP18
CCT4ENSG00000115484.105919.911504810.581000.299306.167805.33310HepG2UTP3
CCT4ENSG00000115484.103967.735205315.36240-0.421903.636002.81440HepG2XRN2
CCT4ENSG00000115484.104364.562104924.66440-0.174202.758302.08700HepG2ZC3H8
CCT4ENSG00000115484.1012303.4703010026.646100.295106.848906.01360K562AGGF1
CCT4ENSG00000115484.1013794.1225010433.246600.402805.298804.37940K562AKAP8L
CCT4ENSG00000115484.1013686.6197010947.113600.322105.676404.31180K562ATP5C1
CCT4ENSG00000115484.105485.008407219.45670-0.396404.817803.78690K562CPSF6
CCT4ENSG00000115484.1014982.2259013054.115900.198603.200802.50760K562DDX47
CCT4ENSG00000115484.1015228.0916011226.501400.4397010.738108.77930K562DKC1
CCT4ENSG00000115484.107696.1862010648.15410-0.4684011.6901010.36400K562EIF2S2
CCT4ENSG00000115484.105952.686308187.56650-0.459906.137304.92450K562EIF4A3
CCT4ENSG00000115484.1015077.0147017672.66380-0.229203.533902.47340K562EIF4G2
CCT4ENSG00000115484.105194.966407345.25170-0.499704.841203.70680K562FMR1
CCT4ENSG00000115484.1011325.469608051.759300.492103.935003.05620K562G3BP2
CCT4ENSG00000115484.105097.880006892.95910-0.435205.734904.59600K562GPKOW
CCT4ENSG00000115484.109438.5737011235.99930-0.251502.655901.60480K562HNRNPA1
CCT4ENSG00000115484.104311.217207215.14870-0.7429017.2321015.82230K562HNRNPC
CCT4ENSG00000115484.109122.784007466.969800.288902.117301.30980K562HNRNPM
CCT4ENSG00000115484.1016791.4642012305.910300.448305.984204.82710K562HSPD1
CCT4ENSG00000115484.1014423.7063011072.047900.381404.956303.78990K562KIF1C
CCT4ENSG00000115484.104149.719105885.32210-0.504104.082602.92940K562KRR1
CCT4ENSG00000115484.1014455.2424012403.523100.220702.137401.35420K562MBNL1
CCT4ENSG00000115484.105398.632606728.23200-0.317603.176402.23490K562METAP2
CCT4ENSG00000115484.108954.1583010334.78320-0.206903.623302.70690K562MTPAP
CCT4ENSG00000115484.1011308.345308693.992000.379202.691001.82170K562NAA15
CCT4ENSG00000115484.1010099.2029011482.84160-0.185205.046004.07990K562NSUN2
CCT4ENSG00000115484.107925.150409776.50970-0.302902.253501.50390K562PCBP3
CCT4ENSG00000115484.106082.456907498.90790-0.302003.779502.83780K562POLR2G
CCT4ENSG00000115484.1013369.5153010305.626700.375404.135603.10670K562PPIG
CCT4ENSG00000115484.109219.583507014.745700.394204.441803.49240K562PRPF8
CCT4ENSG00000115484.1016608.5006020095.23590-0.274904.818903.53880K562PUM2
CCT4ENSG00000115484.1017724.5642010346.440500.7765015.3810014.14170K562PUS1
CCT4ENSG00000115484.1013905.9247010081.443200.4639010.716709.57270K562RBM15
CCT4ENSG00000115484.1010017.5232011330.67970-0.177702.192101.45900K562SF3A3
CCT4ENSG00000115484.104505.700706554.88560-0.540805.734504.30090K562SF3B1
CCT4ENSG00000115484.109821.2107011608.53010-0.241205.888804.59110K562SRPK2
CCT4ENSG00000115484.105126.986206792.41450-0.405803.459102.30940K562SUPV3L1
CCT4ENSG00000115484.107398.129009896.26320-0.419704.577203.66270K562TARDBP
CCT4ENSG00000115484.108125.580609545.92260-0.232402.367801.61760K562TIA1
CCT4ENSG00000115484.104660.156006222.20810-0.417004.012102.87090K562TIAL1
CCT4ENSG00000115484.109669.193708063.417900.261903.130402.27640K562U2AF2
CCT4ENSG00000115484.108891.6780012175.50290-0.4535014.8460013.33710K562UPF1
CCT4ENSG00000115484.108254.4834010418.18930-0.335904.246803.15330K562WDR3
CCT4ENSG00000115484.1013766.2769018091.59220-0.394204.929003.72390K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCT4 is not available on ENCORE database.





21 RBPs can affect the splicing of CCT4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCT4ENSG00000115484.10chr2-621151586211539262112154621122076211551562115748-0.089000.000040.00138excludedHepG2U2AF1
SECCT4ENSG00000115484.10chr2-6211515862115392621121546211220762115515621157480.076000.000000.00006includedK562AKAP8L
SECCT4ENSG00000115484.10chr2-6211515862115392621121546211220762115515621157480.051000.000150.01923includedK562XRCC6
SECCT4ENSG00000115484.10chr2-621151586211539262112154621122076211551562115748-0.319000.000390.00627excludedHepG2U2AF2
SECCT4ENSG00000115484.10chr2-621032296210344462100336621004286210405462104187-0.052000.000000.00000excludedK562AQR
SECCT4ENSG00000115484.10chr2-6211515862115392621121546211220762115515621157480.149000.000000.00044includedHepG2SRSF7
SECCT4ENSG00000115484.10chr2-6211515862115392621121546211220762115515621157480.123000.000000.00000includedK562PUS1
SECCT4ENSG00000115484.10chr2-621151586211539262112154621122076211551562115748-0.532000.000000.00000excludedHepG2SFPQ
SECCT4ENSG00000115484.10chr2-6211515862115392621121546211220762115515621157480.111000.000000.00016includedK562HNRNPL
SECCT4ENSG00000115484.10chr2-621151586211539262112154621122076211551562115748-0.052000.000010.00048excludedHepG2SRSF1
SECCT4ENSG00000115484.10chr2-6211515862115392621121546211220762115515621157480.071000.000510.07670includedK562SRSF7
SECCT4ENSG00000115484.10chr2-6211515862115392621121546211220762115515621157480.073000.000000.00018includedK562UTP18
SECCT4ENSG00000115484.10chr2-6211515862115392621121546211220762115515621157480.095000.004860.07089includedK562U2AF2
SECCT4ENSG00000115484.10chr2-6211515862115392621121546211220762115515621157480.114000.000000.00000includedK562RBM15
SECCT4ENSG00000115484.10chr2-6211515862115392621121546211220762115515621157480.107000.000000.00000includedK562AGGF1
SECCT4ENSG00000115484.10chr2-6211515862115392621121546211220762115515621157480.051000.000110.04903includedK562NCBP2
SECCT4ENSG00000115484.10chr2-6211515862115392621121546211220762115515621157480.071000.000280.06246includedHepG2FUS
SECCT4ENSG00000115484.10chr2-621151586211539262112154621122076211551562115748-0.078000.000200.04931excludedHepG2PRPF4
A3SSCCT4ENSG00000115484.10chr2-6210600362106189621060036210614662110593621107400.328000.003330.02022longerK562AQR
MXECCT4ENSG00000115484.10chr2-6210742062107529621105936211068362106003621061466211215462112207-0.102000.000050.003332includedK562UCHL5
MXECCT4ENSG00000115484.10chr2-6210742062107529621105936211068362106003621061466211215462112207-0.064000.006600.077472includedK562U2AF1
MXECCT4ENSG00000115484.10chr2-6210742062107529621105936211068362106003621061466211215462112207-0.082000.001270.039782includedK562XRN2
MXECCT4ENSG00000115484.10chr2-6210742062107529621105936211068362106003621061466211215462112207-0.065000.002780.076742includedK562LIN28B
MXECCT4ENSG00000115484.10chr2-6211059362110740621121546211220762107420621075296211551562115791-0.116000.000230.002492includedK562AQR
MXECCT4ENSG00000115484.10chr2-62107420621075296211059362110683621060036210614662112154621122070.098000.000930.051301includedHepG2XPO5
MXECCT4ENSG00000115484.10chr2-6210742062107529621105936211068362106003621061466211215462112207-0.064000.005900.062142includedK562U2AF2
MXECCT4ENSG00000115484.10chr2-6210742062107529621105936211068362106003621061466211215462112207-0.106000.000170.009032includedHepG2XRN2
MXECCT4ENSG00000115484.10chr2-6210742062107529621105936211068362106003621061466211215462112207-0.087000.000580.045992includedK562SERBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCT4 is not avaliable on ENCORE database.