YBX2

General Information

Gene Name       : YBX2
Gene ID             : ENSG00000006047.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: YBX2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878YBX2ENSG00000006047.120.000.000.00ENCSR000AEF
HepG2YBX2ENSG00000006047.120.250.140.20ENCSR985KAT
K562YBX2ENSG00000006047.120.020.020.02ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
RNA Bind-n-SeqRBNS: YBX2YBX2cell-free sampleReleased






  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
YBX2YBX2ReleasedENCODE4


  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for YBX2 is not avaliable on ENCORE database.


  • The binding motifs of YBX2

    • Trulli

Proteins bound to RNA

  • NO known proteins bind on YBX2 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for YBX2 is not avaliable on ENCORE database.






NO known proteins are bound to YBX2 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for YBX2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for YBX2 is not available on ENCORE database.

  • 16 RBPs can affect the levels of YBX2.  








The Knockdown/knockout RNA-Seq assay for YBX2 is not available on ENCORE database.





16 RBPs can affect the gene expression of YBX2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
YBX2ENSG00000006047.859.2389010.905702.441406.467305.58190HepG2EIF2S1
YBX2ENSG00000006047.838.4450011.797501.704202.731001.64560HepG2ESF1
YBX2ENSG00000006047.876.760409.147903.0688010.476309.28620HepG2GPKOW
YBX2ENSG00000006047.829.191106.203902.234203.125902.44530HepG2HNRNPA1
YBX2ENSG00000006047.825.0701010.373201.273001.945301.33720HepG2HNRNPF
YBX2ENSG00000006047.833.701908.729901.948702.989502.33890HepG2HNRNPLL
YBX2ENSG00000006047.832.993708.901101.890002.472401.55990HepG2MTPAP
YBX2ENSG00000006047.832.379407.740002.064603.017402.23680HepG2NSUN2
YBX2ENSG00000006047.831.8971011.147201.516602.210301.55940HepG2PABPC4
YBX2ENSG00000006047.830.751807.613402.014003.327902.48670HepG2PRPF4
YBX2ENSG00000006047.856.6857011.260302.331606.709805.83520HepG2PUF60
YBX2ENSG00000006047.80.0000011.33420-99999.999992.799002.09080HepG2RAVER1
YBX2ENSG00000006047.840.154508.744602.199002.871501.48740HepG2SF1
YBX2ENSG00000006047.82.4189016.21560-2.745002.534602.07700HepG2SRSF1
YBX2ENSG00000006047.834.0064011.794601.527602.561102.06240HepG2SSB
YBX2ENSG00000006047.832.604004.743102.781104.108503.23320HepG2XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for YBX2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of YBX2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for YBX2 is not avaliable on ENCORE database.