SELO

General Information

Gene Name       : SELO
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SELO)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SELO is not avaliable on ENCORE database.



Proteins bound to RNA
  • SELO RNA is bound by 27 proteins.  







eCLIP assay for SELO is not avaliable on ENCORE database.





27 proteins are bound to SELO RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr225064871850648740+CDS4.717418.68543HepG2PPIG
chr225064698450647035+CDS3.401805.44241K562DROSHA
chr225064707950647130+CDS3.833507.83545HepG2PPIG
chr225064860950648646+CDS,intron-Proximal5.224208.55457HepG2PPIG
chr225064915450649226+CDS3.933973.99145HepG2SRSF1
chr225065528250655343+CDS,intron-Proximal4.3791011.50355HepG2PRPF8
chr225064691250646972+CDS,intron-Proximal4.254109.38995K562TIA1
chr225063958850639622+CDS4.140973.98553K562NONO
chr225064905850649097+CDS,intron-Proximal3.684867.36645HepG2PPIG
chr225063979250639806+CDS3.803933.07008K562NONO
chr225065416550654229+CDS3.872203.28461K562BUD13
chr225064853250648612+CDS,intron-Proximal4.1169013.30158HepG2SF3B4
chr225064690450646979+CDS,intron-Proximal4.2830917.12772HepG2U2AF2
chr225063991050639959+CDS3.591063.58549K562NONO
chr225065540250655532+CDS4.996065.05521HepG2PABPN1
chr225063966250639758+CDS3.256187.02766K562NONO
chr225064694650646968+CDS,intron-Proximal3.896473.52436K562DROSHA
chr225064690750646974+CDS,intron-Proximal4.397333.25678HepG2SF3B4
chr225064700250647054+CDS3.815755.82242K562EWSR1
chr225064857050648626+CDS,intron-Proximal6.6545841.42376K562SF3B4
chr225064930950649383+CDS,intron-Proximal4.365589.97647HepG2PRPF8
chr225064770550647768+intron-Distal3.375663.29499HepG2PRPF4
chr225065397450654041+intron-Distal4.074533.71567HepG2RBFOX2
chr225064977950649855+intron-Distal3.955196.15196HepG2HNRNPM
chr225064072950640874+intron-Distal4.341654.08723K562HNRNPK
chr225064822450648286+intron-Distal4.633405.95343K562EWSR1
chr225064747250647558+intron-Distal4.873196.57216HepG2PRPF4
chr225064077450640809+intron-Distal3.086284.35275HepG2HLTF
chr225064534550645410+intron-Distal3.177243.24283HepG2NKRF
chr225064879350648855+intron-Distal,intron-Proximal4.887596.64533HepG2RBFOX2
chr225064752950647560+intron-Distal3.243313.25653K562CSTF2T
chr225064165450641732+intron-Distal3.334124.48017K562SAFB2
chr225064011450640169+intron-Distal,intron-Proximal3.753964.41726HepG2NKRF
chr225064750950647563+intron-Distal4.214184.14518HepG2GTF2F1
chr225064822250648302+intron-Distal5.422715.19464K562DROSHA
chr225064165450641737+intron-Distal3.234777.50579HepG2HLTF
chr225064740550647508+intron-Distal3.715197.85210K562DROSHA
chr225064645050646559+intron-Distal3.386404.35650K562KHSRP
chr225064043450640506+intron-Distal4.356894.33692K562NONO
chr225064821350648298+intron-Distal3.133776.38416HepG2FAM120A
chr225065187350651943+intron-Distal4.186797.43424HepG2HNRNPM
chr225065377350653848+intron-Distal4.049103.26022HepG2PRPF4
chr225065189050651947+intron-Distal4.403673.53404K562HNRNPM
chr225064518250645214+intron-Distal3.764933.07008K562NONO
chr225064741150647474+intron-Distal4.322088.64614K562CSTF2T
chr225064740550647477+intron-Distal3.417048.36138HepG2FAM120A
chr225064790150647989+intron-Distal3.268156.38100HepG2CSTF2T
chr225064082250640910+intron-Distal3.008653.57421K562SAFB
chr225064771450647817+intron-Distal3.002475.61398HepG2CSTF2T
chr225064748950647563+intron-Distal4.698135.19780K562NONO
chr225064811650648160+intron-Distal4.315503.18269HepG2XPO5
chr225064503350645120+intron-Distal,intron-Proximal3.752166.09862K562NONO
chr225064776650647818+intron-Distal4.472433.57893K562EWSR1
chr225064005750640122+intron-Distal,intron-Proximal5.044647.85689K562NONO
chr225064073950640806+intron-Distal3.436176.59715HepG2HNRNPK
chr225064638050646429+intron-Distal4.239163.30664K562NONO
chr225064736250647472+intron-Distal4.2703813.92363HepG2PRPF4
chr225064452950644589+intron-Distal4.359674.48497K562NONO
chr225064531350645367+intron-Distal3.264913.36199K562EWSR1
chr225064741450647490+intron-Distal3.621485.01332HepG2GTF2F1
chr225064822450648281+intron-Distal3.903433.01994HepG2GTF2F1
chr225064740950647477+intron-Distal3.493084.89825HepG2DGCR8
chr225064738950647514+intron-Distal5.5909511.94011K562EWSR1
chr225064819550648288+intron-Distal3.828866.65823HepG2PRPF4
chr225064793050647987+intron-Distal4.833675.95343K562EWSR1
chr225064765050647737+intron-Distal3.296344.13791K562CSTF2T
chr225064740950647526+intron-Distal4.9036318.65014K562GTF2F1
chr225064146950641552+intron-Distal3.532836.63189HepG2HLTF
chr225064002750640156+intron-Distal,intron-Proximal4.4415013.69009HepG2EFTUD2
chr225064035850640398+intron-Distal4.326863.37054HepG2XPO5
chr225064050650640585+intron-Distal4.704466.87697K562NONO
chr225064003450640095+intron-Proximal3.182753.65183HepG2XRN2
chr225064002350640114+intron-Proximal5.2171011.91893HepG2NKRF
chr225064855750648609+intron-Proximal4.179163.70701HepG2PRPF4
chr225064468550644743+intron-Proximal5.5683613.25000HepG2SF3B4
chr225064856050648570+intron-Proximal6.3894435.42664K562SF3B4
chr225065407150654131+intron-Proximal4.471093.48173K562GTF2F1
chr225064716450647188+intron-Proximal3.972453.82910K562NONO
chr225064494950644985+intron-Proximal3.821999.09021HepG2PRPF8
chr225065406850654138+intron-Proximal4.429125.35385HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SELO is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SELO is not available on ENCORE database.

  • 83 RBPs can affect the levels of SELO.  








The Knockdown/knockout RNA-Seq assay for SELO is not available on ENCORE database.





83 RBPs can affect the gene expression of SELO :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SELOENSG00000073169.9416.79630295.522700.496004.018603.24580HepG2CKAP4
SELOENSG00000073169.9360.97510273.375400.400902.716701.88980HepG2DDX19B
SELOENSG00000073169.9364.98440282.796400.368001.998201.40820HepG2DKC1
SELOENSG00000073169.9117.9863056.263001.068304.425703.55180HepG2DNAJC21
SELOENSG00000073169.9110.7147055.776900.989004.203503.43160HepG2DNAJC2
SELOENSG00000073169.9460.96110271.249300.764901.892901.36030HepG2EIF4A3
SELOENSG00000073169.9177.92170279.09220-0.649502.684401.91020HepG2FUBP3
SELOENSG00000073169.9221.89380143.272200.631002.409001.80750HepG2GPKOW
SELOENSG00000073169.9176.4519074.531201.243305.672503.63730HepG2HNRNPA0
SELOENSG00000073169.9165.3817063.185401.388002.800102.10300HepG2HNRNPC
SELOENSG00000073169.9204.34180135.457700.593003.387302.60010HepG2HNRNPF
SELOENSG00000073169.9203.93770132.862900.618103.141602.42620HepG2HNRNPL
SELOENSG00000073169.9149.0552062.767401.247707.207606.26550HepG2HNRNPU
SELOENSG00000073169.9251.84110133.390400.916805.481304.49800HepG2IGF2BP1
SELOENSG00000073169.9114.5934064.114200.837703.373602.57050HepG2ILF2
SELOENSG00000073169.9189.5962083.961301.175003.201501.90030HepG2KHDRBS1
SELOENSG00000073169.9534.99540274.129800.964603.445802.71320HepG2MAGOH
SELOENSG00000073169.9211.46250144.631100.547902.540601.81070HepG2NOL12
SELOENSG00000073169.9149.1056052.886201.495306.527404.32530HepG2NOLC1
SELOENSG00000073169.9189.2809055.982901.7574014.6610013.03940HepG2PPIL4
SELOENSG00000073169.9374.38090138.064101.4391016.0131014.73930HepG2PUF60
SELOENSG00000073169.9243.10700146.562400.730004.891104.14790HepG2PUM1
SELOENSG00000073169.9398.33250301.074200.403802.716702.10480HepG2PUS1
SELOENSG00000073169.9213.44200338.33000-0.664604.502503.88360HepG2RBM22
SELOENSG00000073169.9398.46810252.776500.656502.266501.65120HepG2RBM25
SELOENSG00000073169.9192.0718084.696801.181202.256901.30240HepG2RCC2
SELOENSG00000073169.9224.7047096.157801.224502.746401.94800HepG2RPS2
SELOENSG00000073169.9208.0363088.462701.233605.473004.33950HepG2RPS3A
SELOENSG00000073169.9167.9309055.895001.587004.901804.08540HepG2SAFB2
SELOENSG00000073169.9237.57590135.321900.811903.253802.49390HepG2SF3B1
SELOENSG00000073169.9397.79070267.751200.571004.058403.36440HepG2SF3B4
SELOENSG00000073169.9268.63210132.384601.020808.825907.68530HepG2SLBP
SELOENSG00000073169.9105.2011065.179500.690602.244201.65550HepG2SMN1
SELOENSG00000073169.9168.89050279.46980-0.726604.653204.07980HepG2SRSF1
SELOENSG00000073169.973.69410145.64410-0.982802.735001.74040HepG2SRSF3
SELOENSG00000073169.9225.50310133.071400.760802.453801.79570HepG2SRSF7
SELOENSG00000073169.9114.72450227.35970-0.986807.314706.49390HepG2SRSF9
SELOENSG00000073169.9579.55840331.759100.8047010.592909.71580HepG2SSB
SELOENSG00000073169.9178.0016077.017101.208504.994603.46800HepG2STIP1
SELOENSG00000073169.9213.25820155.031800.459902.104401.54780HepG2SUCLG1
SELOENSG00000073169.990.48180251.18580-1.4731012.9374011.86030HepG2TAF15
SELOENSG00000073169.9233.9423060.976901.939704.382203.78270HepG2TIAL1
SELOENSG00000073169.9176.8556061.536301.5230011.5942010.55690HepG2TRIM56
SELOENSG00000073169.9257.75460134.884900.934202.611901.76470HepG2TUFM
SELOENSG00000073169.9318.56840142.774901.157807.286605.90290HepG2UBE2L3
SELOENSG00000073169.9175.70060269.39650-0.616603.484602.82660HepG2UTP3
SELOENSG00000073169.9209.2537079.246701.400707.662405.84130HepG2XPO5
SELOENSG00000073169.9346.38980122.398301.500708.422407.17080HepG2XRN2
SELOENSG00000073169.9506.19360305.319500.729304.353003.66990K562AGGF1
SELOENSG00000073169.9512.54420335.501500.611302.615501.66670K562AKAP8
SELOENSG00000073169.9562.44090317.699100.823908.273607.08400K562AKAP8L
SELOENSG00000073169.9497.65580333.343600.578005.156003.86500K562ATP5C1
SELOENSG00000073169.9221.74870130.456500.765304.055702.41350K562BCCIP
SELOENSG00000073169.9241.67850126.081300.938606.195704.73630K562BCLAF1
SELOENSG00000073169.9207.7578095.651501.118906.813505.04530K562CSTF2
SELOENSG00000073169.9403.59270600.15400-0.572402.391401.48600K562CELF1
SELOENSG00000073169.9171.5493091.476500.907103.741401.76730K562DDX51
SELOENSG00000073169.9187.6606084.640301.148605.796704.44550K562EFTUD2
SELOENSG00000073169.9211.99160300.07340-0.501302.721502.12080K562FXR1
SELOENSG00000073169.93.3704031.44440-3.221805.388904.32640K562G3BP2
SELOENSG00000073169.9402.82100282.956800.509502.855202.08930K562GRSF1
SELOENSG00000073169.9258.4408092.704401.479004.441403.01550K562IGF2BP2
SELOENSG00000073169.9162.9034094.246900.789403.128401.84280K562IGF2BP3
SELOENSG00000073169.9116.85170245.72560-1.072403.858202.15780K562ILF2
SELOENSG00000073169.9201.0888097.314901.047006.757005.41610K562MAGOH
SELOENSG00000073169.9452.04560322.743100.486002.662101.61310K562MAK16
SELOENSG00000073169.9197.6933097.100201.025604.007102.88110K562MATR3
SELOENSG00000073169.9496.86070377.701000.395502.478901.62610K562MBNL1
SELOENSG00000073169.9166.91900288.11710-0.787504.472402.89750K562NCBP2
SELOENSG00000073169.9166.3781083.489300.994704.190402.51890K562NONO
SELOENSG00000073169.9221.05150140.027900.658603.205002.31150K562PPIG
SELOENSG00000073169.9137.4704082.365700.738902.178801.50920K562PRPF8
SELOENSG00000073169.9192.1187094.556001.022706.378205.40470K562PTBP1
SELOENSG00000073169.9299.60730566.40770-0.918804.442103.06220K562PUM1
SELOENSG00000073169.9405.25470306.988200.400502.357401.80270K562RBM15
SELOENSG00000073169.9157.2029090.605800.794902.423801.64010K562RBM22
SELOENSG00000073169.9162.6596088.370900.880103.539501.90610K562RBM34
SELOENSG00000073169.9103.96050240.18390-1.208105.151002.90350K562RPS3A
SELOENSG00000073169.9271.03800377.80030-0.479103.197102.32280K562SF3A3
SELOENSG00000073169.975.9509032.641701.218303.839602.82680K562SF3B4
SELOENSG00000073169.9166.2790082.283401.014804.559702.40840K562SRP68
SELOENSG00000073169.9165.9601092.709200.840003.752202.93460K562SRSF1
SELOENSG00000073169.9153.6776070.584601.122404.718803.28300K562SRSF4
SELOENSG00000073169.9213.2955087.588501.283905.278003.74160K562SRSF5
SELOENSG00000073169.9149.2273079.699600.904802.298601.37650K562SUPV3L1
SELOENSG00000073169.9223.0619093.800201.249707.043305.86380K562TARDBP
SELOENSG00000073169.9237.5309090.488101.3922011.134709.37330K562TIA1
SELOENSG00000073169.9205.1834088.860901.207202.968501.82920K562TRA2A
SELOENSG00000073169.9153.9832084.376300.867803.273602.16280K562UCHL5
SELOENSG00000073169.9239.16890361.21060-0.594804.766203.68210K562WDR43
SELOENSG00000073169.9195.9569085.956801.188806.572404.45530K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SELO is not available on ENCORE database.





5 RBPs can affect the splicing of SELO :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESELOENSG00000073169.9chr22+5064334750643453506394075064001950644745506449490.353000.000150.00408includedHepG2U2AF1
SESELOENSG00000073169.9chr22+5064334750643453506394075064001950644745506449490.655000.000000.00096includedK562XRCC6
SESELOENSG00000073169.9chr22+506433475064345350639407506400195064474550644949-0.229000.000140.07027excludedHepG2UPF1
SESELOENSG00000073169.9chr22+5065089650651113506490595064934050654145506542960.507000.000010.00302includedK562HNRNPM
SESELOENSG00000073169.9chr22+506508965065111350649059506493405065414550654296-0.120000.000310.02666excludedHepG2HNRNPL

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SELO is not avaliable on ENCORE database.