RNF216P1

General Information

Gene Name       : RNF216P1
Gene ID             : ENSG00000196204.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNF216P1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF216P1ENSG00000196204.1115.6113.1514.38ENCSR000AEF
HepG2RNF216P1ENSG00000196204.1121.0226.4823.75ENCSR985KAT
K562RNF216P1ENSG00000196204.1132.6332.4032.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF216P1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF216P1 RNA is bound by 12 proteins.  







eCLIP assay for RNF216P1 is not avaliable on ENCORE database.





12 proteins are bound to RNF216P1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr750352345035349+intron-Distal,intron-Proximal3.118383.00054HepG2PRPF4
chr750374585037595+intron-Distal4.718896.07826K562IGF2BP2
chr750234255023523+intron-Distal,intron-Proximal3.039015.36888K562KHSRP
chr750364345036504+intron-Distal4.287393.48187K562RBM15
chr750366775036798+intron-Distal3.185173.78791K562RBM15
chr750668005066892+intron-Distal4.961844.90095K562PTBP1
chr750368635036916+intron-Distal4.109695.99105K562UPF1
chr750373255037367+intron-Distal4.588776.92189HepG2PCBP2
chr750373895037440+intron-Distal5.318518.40676K562UPF1
chr750374025037476+intron-Distal3.939333.66655K562YBX3
chr750373325037378+intron-Distal3.146695.09741K562UPF1
chr750315675031633+intron-Distal4.5433211.61021K562TARDBP
chr750286535028729+intron-Distal,intron-Proximal4.499144.64001HepG2U2AF2
chr750244885024555+5'-UTR,intron-Distal,intron-Proximal4.860594.65563K562AQR
chr750368575036916+intron-Distal4.055643.73331K562RBM15
chr750376625037744+intron-Distal3.944497.71860K562UPF1
chr750234115023525+intron-Distal,intron-Proximal4.199638.29266K562AQR
chr750368125036840+intron-Distal4.141693.54010K562UPF1
chr750374405037504+intron-Distal3.273217.66288K562UPF1
chr750136845013794+intron-Proximal3.684156.02664K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF216P1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF216P1 is not available on ENCORE database.

  • 52 RBPs can affect the levels of RNF216P1.  








The Knockdown/knockout RNA-Seq assay for RNF216P1 is not available on ENCORE database.





52 RBPs can affect the gene expression of RNF216P1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF216P1ENSG00000196204.7438.94410554.10800-0.336102.576401.98640HepG2ACO1
RNF216P1ENSG00000196204.7392.57990592.46250-0.593704.113003.16410HepG2ASCC1
RNF216P1ENSG00000196204.7896.28250746.970800.262802.178401.55610HepG2AUH
RNF216P1ENSG00000196204.7403.99320562.87810-0.478502.873402.08560HepG2CIRBP
RNF216P1ENSG00000196204.7445.52700554.04310-0.314502.393101.76650HepG2CKAP4
RNF216P1ENSG00000196204.7886.46530640.089000.469705.342204.50140HepG2CELF1
RNF216P1ENSG00000196204.7487.68340685.91770-0.492103.123202.46280HepG2DDX3X
RNF216P1ENSG00000196204.7690.66530527.231200.389502.584101.32930HepG2DDX47
RNF216P1ENSG00000196204.7372.86500544.62040-0.546602.200001.33230HepG2DDX59
RNF216P1ENSG00000196204.7284.81520429.68200-0.593204.864303.95550HepG2DNAJC21
RNF216P1ENSG00000196204.7243.81390366.08620-0.586403.348402.12490HepG2EFTUD2
RNF216P1ENSG00000196204.7627.96220356.478300.816807.035705.65300HepG2EIF3D
RNF216P1ENSG00000196204.7823.80590625.987000.396102.253601.67480HepG2EIF4A3
RNF216P1ENSG00000196204.71018.45660857.596500.247902.271601.71820HepG2ETF1
RNF216P1ENSG00000196204.7298.45790431.81350-0.532902.611901.62460HepG2GNB2L1
RNF216P1ENSG00000196204.7598.41800433.799000.464003.202202.51360HepG2HNRNPA1
RNF216P1ENSG00000196204.7925.16170595.541000.635405.704404.76870HepG2IGF2BP2
RNF216P1ENSG00000196204.7400.71200506.55870-0.338202.565101.58240HepG2KIF1C
RNF216P1ENSG00000196204.7939.65350717.325200.389402.049301.34350HepG2LARP4
RNF216P1ENSG00000196204.7439.24150635.31240-0.532503.193602.52060HepG2MATR3
RNF216P1ENSG00000196204.7730.51700553.205100.401002.630301.84160HepG2MSI2
RNF216P1ENSG00000196204.7582.48520402.494100.533202.273701.48360HepG2PABPC1
RNF216P1ENSG00000196204.7505.55710651.48350-0.365902.348301.79250HepG2PUF60
RNF216P1ENSG00000196204.7850.99990691.072100.300202.124601.53310HepG2PUM2
RNF216P1ENSG00000196204.7427.37010716.79740-0.746109.099308.28380HepG2RBM22
RNF216P1ENSG00000196204.7729.02090581.492400.326102.121601.52530HepG2RBM25
RNF216P1ENSG00000196204.7537.19170658.39580-0.293501.987901.51310HepG2NELFE
RNF216P1ENSG00000196204.7858.05130630.794800.443803.368602.62520HepG2RPLP0
RNF216P1ENSG00000196204.7198.91550336.62910-0.759004.384503.42040HepG2RRP9
RNF216P1ENSG00000196204.7306.91740426.86910-0.475903.678102.95450HepG2SAFB2
RNF216P1ENSG00000196204.7514.22510642.90020-0.322202.281301.84110HepG2SRSF1
RNF216P1ENSG00000196204.7519.24010643.24120-0.309002.319501.74020HepG2SRSF5
RNF216P1ENSG00000196204.7421.53600523.03580-0.311302.191301.68850HepG2SRSF9
RNF216P1ENSG00000196204.7423.15800577.87100-0.449603.591302.96820HepG2TAF15
RNF216P1ENSG00000196204.7404.32350603.72070-0.578406.521005.52370HepG2UPF1
RNF216P1ENSG00000196204.7660.65100402.151400.716003.977102.76450HepG2UPF2
RNF216P1ENSG00000196204.7868.79080582.871600.575707.832106.90680HepG2UTP3
RNF216P1ENSG00000196204.7822.66620663.980000.309103.113002.54310HepG2ZNF622
RNF216P1ENSG00000196204.71247.97990922.687300.435605.938905.15700K562AGGF1
RNF216P1ENSG00000196204.71324.664801068.224800.310303.440302.72430K562DDX47
RNF216P1ENSG00000196204.7457.61440624.55870-0.448702.530501.66020K562EFTUD2
RNF216P1ENSG00000196204.71156.69970668.831400.790206.687104.98550K562EIF3D
RNF216P1ENSG00000196204.7751.18420456.932300.717108.929507.50250K562EIF3G
RNF216P1ENSG00000196204.7823.92410589.647200.482604.113303.11450K562EIF4A3
RNF216P1ENSG00000196204.71036.27660613.210000.7569012.9995011.78670K562FXR1
RNF216P1ENSG00000196204.71724.161401357.601200.344703.123902.32250K562GRSF1
RNF216P1ENSG00000196204.71123.75700698.444200.686006.537105.01320K562HNRNPM
RNF216P1ENSG00000196204.7778.58180578.926100.427402.442701.49650K562IGF2BP2
RNF216P1ENSG00000196204.7849.59790608.410500.481604.491603.41330K562MAGOH
RNF216P1ENSG00000196204.71402.712301141.434900.297302.262901.45330K562MBNL1
RNF216P1ENSG00000196204.7904.47960591.110300.613607.287806.24710K562PTBP1
RNF216P1ENSG00000196204.71991.059201432.071800.475305.185704.07240K562PUF60
RNF216P1ENSG00000196204.71285.55480952.167800.433003.576402.97080K562PUS1
RNF216P1ENSG00000196204.71155.74800927.730600.316902.889902.28490K562RBM15
RNF216P1ENSG00000196204.7876.48800601.067200.544105.214403.72580K562SAFB
RNF216P1ENSG00000196204.71165.06250676.577300.7840012.7231010.96920K562SYNCRIP
RNF216P1ENSG00000196204.7734.80430565.722000.377202.804901.98110K562TIA1
RNF216P1ENSG00000196204.71352.96690848.197400.6736014.9984013.23950K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF216P1 is not available on ENCORE database.





11 RBPs can affect the splicing of RNF216P1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNF216P1ENSG00000196204.7chr7+502619750262625024540502470650286935028808-0.087000.000530.01239excludedK562SRSF1
SERNF216P1ENSG00000196204.7chr7+5026197502626250245405024706502869350288080.059000.001350.02676includedK562SF3B4
SERNF216P1ENSG00000196204.7chr7+502869350288085024540502470650362405037796-0.208000.001980.03637excludedK562SF3B4
SERNF216P1ENSG00000196204.7chr7+502869350288085024540502470650362405037796-0.205000.000010.00046excludedK562AKAP8L
SERNF216P1ENSG00000196204.7chr7+502619750262625024540502470650286935028808-0.106000.001640.02138excludedHepG2U2AF2
SERNF216P1ENSG00000196204.7chr7+502869350288085024540502470650362405037796-0.099000.013000.09993excludedK562AQR
SERNF216P1ENSG00000196204.7chr7+502869350288085024540502470650362405037796-0.145000.005130.06334excludedK562PUS1
SERNF216P1ENSG00000196204.7chr7+5028693502880850245405024706503624050377960.100000.000030.01090includedK562EIF4G2
SERNF216P1ENSG00000196204.7chr7+5026197502626250245405024706502869350288080.052000.002880.04677includedK562U2AF2
SERNF216P1ENSG00000196204.7chr7+503510550352135028693502880850362405037800-0.231000.001840.05996excludedK562HNRNPU
SERNF216P1ENSG00000196204.7chr7+502869350288085024540502470650362405037796-0.294000.000000.00000excludedK562RBM15
SERNF216P1ENSG00000196204.7chr7+502869350288085024540502470650362405037796-0.118000.002840.06114excludedK562AGGF1
SERNF216P1ENSG00000196204.7chr7+503510550352135028693502880850362405037800-0.202000.000990.04463excludedK562HNRNPK
A3SSRNF216P1ENSG00000196204.7chr7+5028664502880850286935028808502454050247060.081000.000640.00466longerK562AQR
A5SSRNF216P1ENSG00000196204.7chr7+5024540502476150245405024706502869350288080.055000.001460.02576longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNF216P1 is not avaliable on ENCORE database.