LARP4B

General Information

Gene Name : LARP4B
Gene ID : ENSG00000107929.14
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LARP4B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LARP4B	ENSG00000107929.14	20.27	26.50	23.38	ENCSR000AEF
HepG2	LARP4B	ENSG00000107929.14	18.42	17.41	17.91	ENCSR985KAT
K562	LARP4B	ENSG00000107929.14	27.85	29.61	28.73	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LARP4B is not avaliable on ENCORE database.

Proteins bound to RNA

LARP4B RNA is bound by 53 proteins.

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eCLIP assay for LARP4B is not avaliable on ENCORE database.

53 proteins are bound to LARP4B RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	857252	857322	-	3'-UTR,intron-Distal	6.23177	76.48893	K562	PUM2
chr10	858098	858201	-	3'-UTR,intron-Distal	4.65535	53.72494	K562	PUM2
chr10	976859	976982	-	intron-Distal	5.52544	50.51113	HepG2	CSTF2T
chr10	863811	863879	-	CDS,intron-Distal,intron-Proximal	4.46427	26.86601	K562	SF3B4
chr10	976850	976983	-	intron-Distal	4.71033	26.36090	K562	CSTF2T
chr10	976872	976991	-	intron-Distal	4.73892	25.56356	HepG2	PRPF4
chr10	866703	866785	-	CDS,intron-Distal,intron-Proximal	5.15189	25.37826	HepG2	PRPF8
chr10	875345	875417	-	CDS,intron-Distal	3.38506	25.34737	K562	PUM2
chr10	976874	976986	-	intron-Distal	4.37146	24.87205	HepG2	FAM120A
chr10	976883	976999	-	intron-Distal	4.74600	19.55051	HepG2	GTF2F1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 201 entries

eCLIP assay for LARP4B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LARP4B is not available on ENCORE database.
61 RBPs can affect the levels of LARP4B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LARP4B is not available on ENCORE database.

61 RBPs can affect the gene expression of LARP4B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LARP4B	ENSG00000107929.10	1768.70040	1058.73880	0.74020	20.53940	19.29120	HepG2	SRSF9
LARP4B	ENSG00000107929.10	2786.46710	1987.80990	0.48720	11.99980	11.15190	HepG2	SRFBP1
LARP4B	ENSG00000107929.10	3327.16090	1636.45630	1.02360	10.95340	9.41040	HepG2	SNRNP70
LARP4B	ENSG00000107929.10	2328.39980	1496.08910	0.63800	9.08750	8.08050	HepG2	BOP1
LARP4B	ENSG00000107929.10	925.12900	1457.28580	-0.65560	8.97170	7.98140	HepG2	PUF60
LARP4B	ENSG00000107929.10	2580.88030	3813.94520	-0.56340	9.24820	7.84360	K562	GRSF1
LARP4B	ENSG00000107929.10	1791.25650	1314.70590	0.44610	8.49840	7.55190	HepG2	ACO1
LARP4B	ENSG00000107929.10	1628.40100	1176.85980	0.46840	8.16030	7.20890	HepG2	PCBP1
LARP4B	ENSG00000107929.10	2169.00180	1700.99010	0.35060	7.04560	6.27780	HepG2	ZNF622
LARP4B	ENSG00000107929.10	777.90770	1090.68720	-0.48760	7.19430	6.25370	HepG2	HNRNPU
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 68 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LARP4B is not available on ENCORE database.

8 RBPs can affect the splicing of LARP4B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LARP4B	ENSG00000107929.10	chr10	-	915952	916023	910062	910210	930386	930446	0.12800	0.00000	0.00449	included	K562	PUM2
A3SS	LARP4B	ENSG00000107929.10	chr10	-	875620	875713	875620	875674	876806	876917	0.08000	0.00000	0.00001	longer	K562	AQR
A3SS	LARP4B	ENSG00000107929.10	chr10	-	890916	891030	890916	890995	909682	909907	0.06300	0.00006	0.00057	longer	K562	AQR
A5SS	LARP4B	ENSG00000107929.10	chr10	-	871004	871256	871124	871256	866739	866785	-0.08700	0.00012	0.05367	shorter	K562	NPM1
A3SS	LARP4B	ENSG00000107929.10	chr10	-	863664	863902	863664	863829	866739	866785	0.07200	0.00020	0.00167	longer	K562	AQR
A5SS	LARP4B	ENSG00000107929.10	chr10	-	871004	871256	871124	871256	866739	866785	-0.20100	0.00021	0.02306	shorter	K562	RBM15
SE	LARP4B	ENSG00000107929.10	chr10	-	890582	890718	888871	889008	890916	890995	0.27000	0.00028	0.03292	included	HepG2	DDX59
SE	LARP4B	ENSG00000107929.10	chr10	-	915952	916023	910062	910210	930386	930446	0.24300	0.00343	0.03923	included	HepG2	U2AF2
SE	LARP4B	ENSG00000107929.10	chr10	-	890916	890995	888871	889008	909682	909823	0.07000	0.00454	0.08219	included	HepG2	SRSF1
SE	LARP4B	ENSG00000107929.10	chr10	-	876806	877016	875620	875674	882342	882446	-0.07500	0.00503	0.04675	excluded	K562	AQR

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LARP4B

General Information

Functions

Localization

Domains (AlphaFold: LARP4B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LARP4B is not avaliable on ENCORE database.

53 proteins are bound to LARP4B RNA:

eCLIP assay for LARP4B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LARP4B is not available on ENCORE database.

61 RBPs can affect the gene expression of LARP4B :

The Knockdown/knockout RNA-Seq assay for LARP4B is not available on ENCORE database.

8 RBPs can affect the splicing of LARP4B :

The Knockdown/knockout RNA-Seq assay for LARP4B is not avaliable on ENCORE database.