NAT9

General Information

Gene Name       : NAT9
Gene ID             : ENSG00000109065.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NAT9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NAT9ENSG00000109065.1111.2717.9914.63ENCSR000AEF
HepG2NAT9ENSG00000109065.1135.1224.4229.77ENCSR985KAT
K562NAT9ENSG00000109065.1128.8324.9226.88ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NAT9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NAT9 RNA is bound by 23 proteins.  







eCLIP assay for NAT9 is not avaliable on ENCORE database.





23 proteins are bound to NAT9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177276736072767437-3'-UTR,intron-Distal,intron-Proximal4.510245.35992HepG2UPF1
chr177276747272767554-3'-UTR,intron-Distal,intron-Proximal3.192143.20150HepG2AKAP1
chr177276757672767765-3'-UTR,intron-Distal,intron-Proximal5.598068.87118HepG2UPF1
chr177276816272768286-3'-UTR,CDS,intron-Distal,intron-Proximal5.2937622.17023HepG2PRPF8
chr177276817072768296-3'-UTR,CDS,intron-Distal,intron-Proximal4.1260915.88035K562BUD13
chr177276723472767357-3'-UTR,intron-Distal4.6428114.74404K562UPF1
chr177276835272768410-3'-UTR,CDS,intron-Distal,intron-Proximal4.4672310.85246HepG2PRPF8
chr177276780772767871-3'-UTR,CDS,intron-Distal,intron-Proximal4.547763.81597K562RBM15
chr177276831372768358-3'-UTR,CDS,intron-Distal,intron-Proximal3.896915.90528HepG2AQR
chr177276814572768308-3'-UTR,CDS,intron-Distal,intron-Proximal4.451967.08280K562SF3B4
chr177276791272767994-3'-UTR,CDS,intron-Distal,intron-Proximal3.554938.74774HepG2PPIG
chr177276795472768003-3'-UTR,CDS,intron-Distal,intron-Proximal4.153906.79646HepG2PRPF8
chr177276831272768340-3'-UTR,intron-Distal,intron-Proximal5.366995.68502HepG2PRPF8
chr177276692572766978-3'-UTR,intron-Distal3.962213.82297K562NOLC1
chr177276724072767350-3'-UTR,intron-Distal3.732275.56003HepG2AKAP1
chr177276819372768304-3'-UTR,CDS,intron-Distal,intron-Proximal4.426446.81381K562DDX24
chr177276673072766847-3'-UTR,intron-Distal3.151034.99353K562LIN28B
chr177276746972767568-3'-UTR,intron-Distal,intron-Proximal3.786943.60521K562FUS
chr177276818772768273-3'-UTR,CDS,intron-Distal,intron-Proximal4.521697.88423HepG2SF3A3
chr177276691172766965-3'-UTR,intron-Distal3.291895.05294K562UPF1
chr177276817572768222-3'-UTR,CDS,intron-Distal,intron-Proximal3.9235512.50830K562AQR
chr177276821872768289-3'-UTR,CDS,intron-Distal,intron-Proximal4.172227.26711HepG2EFTUD2
chr177276783372767861-3'-UTR,intron-Distal,intron-Proximal3.847073.04254K562UCHL5
chr177276820472768305-3'-UTR,CDS,intron-Distal,intron-Proximal3.577615.38982HepG2PRPF4
chr177276754572767595-3'-UTR,intron-Distal5.181887.60978K562UPF1
chr177276817372768244-3'-UTR,CDS,intron-Distal,intron-Proximal3.549627.71609K562RBFOX2
chr177276817172768270-3'-UTR,CDS,intron-Distal,intron-Proximal3.578507.57831HepG2SF3B4
chr177276747172767576-3'-UTR,intron-Distal,intron-Proximal3.956206.75470HepG2UPF1
chr177276816272768284-3'-UTR,CDS,intron-Distal,intron-Proximal5.5026717.93848K562PRPF8
chr177276819972768310-3'-UTR,CDS,intron-Distal,intron-Proximal3.880265.48466HepG2CDC40
chr177276823872768352-3'-UTR,CDS,intron-Distal,intron-Proximal4.734598.13161K562EFTUD2
chr177276818472768233-3'-UTR,CDS,intron-Distal,intron-Proximal5.261545.43043K562EFTUD2
chr177276816672768257-3'-UTR,CDS,intron-Distal,intron-Proximal5.594059.96618HepG2AQR
chr177276763672767751-3'-UTR,intron-Distal,intron-Proximal4.944467.20635HepG2AKAP1
chr177276818472768304-3'-UTR,CDS,intron-Distal,intron-Proximal3.944035.26179K562XRN2
chr177277216872772292-5'-UTR,intron-Distal,intron-Proximal4.462685.90542HepG2PRPF4
chr177277231872772478-5'-UTR,intron-Distal,intron-Proximal4.314549.43158HepG2NCBP2
chr177276970472769824-5'-UTR,CDS,intron-Distal,intron-Proximal3.012856.55102HepG2GRWD1
chr177276980072769826-5'-UTR,CDS,intron-Distal,intron-Proximal4.223458.09084HepG2PPIG
chr177277179672771852-5'-UTR,CDS,intron-Distal,intron-Proximal3.197873.28035HepG2NCBP2
chr177277176372771848-5'-UTR,CDS,intron-Distal,intron-Proximal3.503167.70405K562ZNF622
chr177277176072771840-5'-UTR,CDS,intron-Distal,intron-Proximal3.394067.32655K562UCHL5
chr177276980172769826-5'-UTR,CDS,intron-Distal,intron-Proximal4.015523.57722K562DDX24
chr177276903472769083-CDS,intron-Distal,intron-Proximal3.820493.56019HepG2GRWD1
chr177276966072769716-CDS,intron-Distal,intron-Proximal3.899597.53394K562AQR
chr177277175772771828-CDS,intron-Distal,intron-Proximal3.604519.04641HepG2PPIG
chr177276916872769234-CDS,intron-Distal,intron-Proximal4.0407512.83177HepG2SF3A3
chr177276971872769789-CDS,intron-Distal,intron-Proximal5.642927.72885K562DDX24
chr177276915372769232-CDS,intron-Distal,intron-Proximal5.5913918.50654K562SF3B4
chr177276903172769068-CDS,intron-Distal,intron-Proximal4.044948.78144HepG2PRPF8
chr177276970572769800-CDS,intron-Distal,intron-Proximal3.8548214.42334HepG2PPIG
chr177276903672769097-CDS,intron-Distal,intron-Proximal3.850855.03335K562UCHL5
chr177276903672769109-CDS,intron-Distal,intron-Proximal3.985774.14015K562DDX24
chr177276920872769257-intron-Distal,intron-Proximal4.381409.63393HepG2SF3B4
chr177276800872768065-intron-Distal,intron-Proximal3.839683.82719HepG2RBM22
chr177276898372769031-intron-Distal,intron-Proximal5.4171612.77088HepG2PRPF8
chr177276919172769208-intron-Distal,intron-Proximal4.9540311.73939HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NAT9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NAT9 is not available on ENCORE database.

  • 85 RBPs can affect the levels of NAT9.  








The Knockdown/knockout RNA-Seq assay for NAT9 is not available on ENCORE database.





85 RBPs can affect the gene expression of NAT9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NAT9ENSG00000109065.7693.81360514.133100.432302.235401.38520HepG2ABCF1
NAT9ENSG00000109065.7754.790001011.82110-0.422802.935502.12770HepG2ASCC1
NAT9ENSG00000109065.7962.38380531.869300.855407.412505.83740HepG2BCCIP
NAT9ENSG00000109065.7541.27520251.202901.1074012.3792011.23500HepG2BOP1
NAT9ENSG00000109065.7253.66960385.14750-0.602504.046802.56780HepG2BUD13
NAT9ENSG00000109065.7358.86440230.605900.637902.190201.56930HepG2CPSF6
NAT9ENSG00000109065.71026.64960762.513000.429005.305104.46810HepG2CELF1
NAT9ENSG00000109065.71147.10980819.786100.484608.598707.40240HepG2DAZAP1
NAT9ENSG00000109065.7547.18780424.619600.365802.078401.48110HepG2DDX21
NAT9ENSG00000109065.7591.18260396.088700.577703.567201.98210HepG2DDX28
NAT9ENSG00000109065.7692.219401171.38520-0.758908.015607.00020HepG2DDX3X
NAT9ENSG00000109065.7761.50450522.958900.542103.094302.28380HepG2DDX55
NAT9ENSG00000109065.7525.26530380.017500.466902.901101.86720HepG2DDX5
NAT9ENSG00000109065.7759.278701006.39970-0.406502.379601.80320HepG2DDX6
NAT9ENSG00000109065.71040.895801354.14550-0.379604.040103.33750HepG2ETF1
NAT9ENSG00000109065.7536.74250404.615400.407602.550201.44720HepG2FASTKD2
NAT9ENSG00000109065.7612.80630427.992600.517702.687401.58740HepG2FUS
NAT9ENSG00000109065.7757.420901000.56270-0.401602.572701.93040HepG2G3BP1
NAT9ENSG00000109065.7763.277801062.38100-0.477003.700502.66130HepG2G3BP2
NAT9ENSG00000109065.7904.93190753.456400.264202.294501.43460HepG2HNRNPA2B1
NAT9ENSG00000109065.7578.12610426.946300.437202.684602.00100HepG2HNRNPC
NAT9ENSG00000109065.7520.53540424.123500.295402.007001.48060HepG2HNRNPU
NAT9ENSG00000109065.7639.73390433.227900.562207.153906.03440HepG2ILF2
NAT9ENSG00000109065.7841.42800483.399800.799506.543605.25520HepG2LARP4
NAT9ENSG00000109065.7783.702501085.11200-0.469503.177002.50490HepG2MATR3
NAT9ENSG00000109065.7628.46390420.094500.581004.609903.58670HepG2MSI2
NAT9ENSG00000109065.7827.124901110.64250-0.425202.885002.23910HepG2NCBP2
NAT9ENSG00000109065.71026.26440812.903700.336103.187402.37110HepG2NOL12
NAT9ENSG00000109065.7621.77730419.808100.566606.090704.91190HepG2PARN
NAT9ENSG00000109065.71189.38850986.910400.269102.571101.98020HepG2PCBP1
NAT9ENSG00000109065.7852.436701004.19630-0.236401.969101.49340HepG2PTBP1
NAT9ENSG00000109065.71062.91360823.808700.367504.175403.47910HepG2PUM1
NAT9ENSG00000109065.71163.26780823.186200.498806.042805.06430HepG2PUM2
NAT9ENSG00000109065.7724.068201087.61610-0.587007.708506.74590HepG2QKI
NAT9ENSG00000109065.71807.902101131.791900.6756011.8369010.91950HepG2RBM22
NAT9ENSG00000109065.7808.30980987.06380-0.288202.048501.46280HepG2RBM25
NAT9ENSG00000109065.7938.90470632.683600.569404.480703.20060HepG2RBM27
NAT9ENSG00000109065.7738.616101117.59220-0.597509.183008.30070HepG2NELFE
NAT9ENSG00000109065.7764.333301040.85230-0.445505.566604.72990HepG2RECQL
NAT9ENSG00000109065.7918.32390661.440400.473304.031103.23180HepG2RPLP0
NAT9ENSG00000109065.7504.20900680.91560-0.433502.157201.45070HepG2RPS3A
NAT9ENSG00000109065.7558.37660377.700000.563906.013305.11910HepG2SAFB2
NAT9ENSG00000109065.7629.77560444.188600.503602.744302.07280HepG2SF3A3
NAT9ENSG00000109065.7616.70630440.460800.485505.234704.39850HepG2SMN1
NAT9ENSG00000109065.7891.60460399.081701.159608.033306.35940HepG2SMNDC1
NAT9ENSG00000109065.7632.447901091.29850-0.7870015.3315014.41050HepG2SRSF1
NAT9ENSG00000109065.7166.90240265.69460-0.670802.199901.31930HepG2SRSF3
NAT9ENSG00000109065.7797.58140603.241300.402804.208903.37710HepG2SRSF7
NAT9ENSG00000109065.7702.75890887.81560-0.337203.502202.89740HepG2SRSF9
NAT9ENSG00000109065.7914.894201109.77480-0.278602.659702.15360HepG2SSB
NAT9ENSG00000109065.71097.23270871.395000.332403.866303.15380HepG2SUCLG1
NAT9ENSG00000109065.7617.08860980.85710-0.668609.576508.63530HepG2TAF15
NAT9ENSG00000109065.7695.20650415.799500.7415010.961809.95050HepG2TRIM56
NAT9ENSG00000109065.7562.29700307.491700.870707.834606.55980HepG2UCHL5
NAT9ENSG00000109065.7307.79350393.92590-0.356002.191601.55830HepG2UPF1
NAT9ENSG00000109065.7655.95160380.322200.7863010.609709.55870HepG2UTP3
NAT9ENSG00000109065.7624.57660429.930700.538702.920501.83130HepG2XRCC6
NAT9ENSG00000109065.7608.38880433.245100.489705.371104.67200HepG2ZNF622
NAT9ENSG00000109065.71023.73750849.180300.269602.320701.49150K562ATP5C1
NAT9ENSG00000109065.71214.29960781.613000.6355011.5483010.31740K562DDX47
NAT9ENSG00000109065.7734.37810414.791600.8240011.496909.85290K562EIF3G
NAT9ENSG00000109065.71013.47830612.202700.727108.939307.46110K562EIF4A3
NAT9ENSG00000109065.7455.90450599.62000-0.395302.688401.44360K562EXOSC5
NAT9ENSG00000109065.7302.47370441.47390-0.545503.180101.95420K562FKBP4
NAT9ENSG00000109065.7892.79020636.663600.487705.081004.29570K562FXR1
NAT9ENSG00000109065.7137.83820367.32940-1.4141012.0793010.38850K562G3BP2
NAT9ENSG00000109065.7411.17740287.367200.516803.084102.24770K562GPKOW
NAT9ENSG00000109065.71835.150401442.148100.347603.300802.47790K562GRSF1
NAT9ENSG00000109065.7717.53240508.238200.497404.000503.29880K562HNRNPC
NAT9ENSG00000109065.7881.14060706.361300.318902.248601.30570K562HNRNPL
NAT9ENSG00000109065.7604.79020418.939800.529603.391402.35310K562HNRNPM
NAT9ENSG00000109065.7759.06820533.056200.509803.217502.08170K562IGF2BP2
NAT9ENSG00000109065.7893.35210559.817100.674207.980706.52140K562MAGOH
NAT9ENSG00000109065.7705.45980558.620000.336602.286101.45450K562MATR3
NAT9ENSG00000109065.7770.70200626.534200.298702.489401.72170K562MTPAP
NAT9ENSG00000109065.7514.63530762.71490-0.567604.221903.19360K562PCBP3
NAT9ENSG00000109065.7443.51240585.03570-0.399602.619601.84320K562POLR2G
NAT9ENSG00000109065.7730.48010578.204100.337202.114301.40100K562PPIG
NAT9ENSG00000109065.7620.90890455.707100.446202.671101.78510K562PSIP1
NAT9ENSG00000109065.7832.03410543.927600.613106.985305.96710K562PTBP1
NAT9ENSG00000109065.71293.60880694.701800.8968010.204108.61460K562RPS19
NAT9ENSG00000109065.7866.90680686.926700.335602.946702.10760K562SF3A3
NAT9ENSG00000109065.7651.97680381.829700.771809.442207.81270K562SF3B4
NAT9ENSG00000109065.7695.91840503.751000.466103.475402.27530K562SRSF5
NAT9ENSG00000109065.7730.70560586.795900.316302.158801.43290K562SYNCRIP
NAT9ENSG00000109065.71022.63890539.612100.9222010.355608.84680K562TARDBP
NAT9ENSG00000109065.7668.03540520.542500.359802.470701.70320K562TIA1
NAT9ENSG00000109065.7681.28780511.038400.414702.862701.74710K562TRA2A
NAT9ENSG00000109065.71035.85970738.091500.488906.998605.91520K562UPF1
NAT9ENSG00000109065.7824.23270656.778400.327503.340402.41850K562WDR43
NAT9ENSG00000109065.71064.70050605.479400.814204.534002.37490K562XRCC6
NAT9ENSG00000109065.71268.039001605.65890-0.340602.905802.01840K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NAT9 is not available on ENCORE database.





24 RBPs can affect the splicing of NAT9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENAT9ENSG00000109065.7chr17-7277000472770194727697147276982772771760727718460.117000.003120.07380includedK562AKAP8L
SENAT9ENSG00000109065.7chr17-7276853072768615727683567276841672769034727691780.051000.004270.04084includedK562AQR
SENAT9ENSG00000109065.7chr17-7277000472770194727697147276982772771760727718460.141000.001320.02151includedK562PUS1
SENAT9ENSG00000109065.7chr17-727717377277184672769714727698247277240572772490-0.137000.001710.05676excludedK562TARDBP
A3SSNAT9ENSG00000109065.7chr17-7277176072771991727717607277184672772405727724620.081000.000560.02374longerK562U2AF2
A3SSNAT9ENSG00000109065.7chr17-7277176072771991727717607277184672772405727724620.191000.000020.00090longerHepG2U2AF2
A3SSNAT9ENSG00000109065.7chr17-727717607277199172771760727718467277240572772462-0.056000.000000.00096shorterHepG2RBM22
A3SSNAT9ENSG00000109065.7chr17-7276837672768615727683767276841672769034727691980.140000.000040.00039longerK562AQR
A3SSNAT9ENSG00000109065.7chr17-7277176072771991727717607277184672772405727724620.066000.000020.00017longerK562AQR
A3SSNAT9ENSG00000109065.7chr17-7276903472769198727690347276917872769714727698240.079000.013790.06962longerK562AQR
A3SSNAT9ENSG00000109065.7chr17-727680987276819372768098727681787276835672768416-0.206000.000070.04783shorterHepG2TIA1
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.191000.000600.03643includedHepG2BCCIP
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.294000.000000.00005includedHepG2U2AF2
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.090000.003010.07989includedHepG2TIA1
RINAT9ENSG00000109065.7chr17-727680987276841672768098727681787276835672768416-0.232000.000450.02062excludedHepG2TIA1
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.402000.000000.00001includedHepG2PRPF8
RINAT9ENSG00000109065.7chr17-727680987276841672768098727681937276835672768416-0.306000.000040.01295excludedK562SSB
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.157000.000000.00009includedHepG2IGF2BP3
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.164000.000000.00007includedHepG2PCBP1
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.142000.000010.00057includedHepG2SRSF1
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.226000.000000.00000includedHepG2QKI
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.151000.001360.01455includedK562AKAP8L
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.193000.000000.00000includedHepG2TAF15
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.163000.000040.00158includedHepG2G3BP1
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.105000.001530.03232includedHepG2KHSRP
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.162000.002140.03654includedHepG2TIAL1
RINAT9ENSG00000109065.7chr17-727680987276841672768098727681937276835672768416-0.181000.002650.09241excludedK562SBDS
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.209000.000000.00000includedHepG2NCBP2
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.181000.000000.00000includedHepG2SF3B4
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.145000.000000.00021includedHepG2SRSF9
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.085000.003170.03439includedHepG2HNRNPK
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.172000.000000.00003includedHepG2PTBP1
RINAT9ENSG00000109065.7chr17-7276809872768416727680987276819372768356727684160.198000.002560.01578includedK562AQR
RINAT9ENSG00000109065.7chr17-727680987276841672768098727681937276835672768416-0.182000.003920.09587excludedK562TARDBP
RINAT9ENSG00000109065.7chr17-727680987276841672768098727681937276835672768416-0.294000.000030.00136excludedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NAT9 is not avaliable on ENCORE database.