MSH6

General Information

Gene Name       : MSH6
Gene ID             : ENSG00000116062.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MSH6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MSH6ENSG00000116062.1469.4364.2466.84ENCSR000AEF
HepG2MSH6ENSG00000116062.1474.42112.2193.31ENCSR985KAT
K562MSH6ENSG00000116062.1472.1585.6178.88ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MSH6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MSH6 RNA is bound by 35 proteins.  







eCLIP assay for MSH6 is not avaliable on ENCORE database.





35 proteins are bound to MSH6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr24802575748025847+3'-UTR,CDS5.0330215.49807HepG2G3BP1
chr24802687148026946+3'-UTR,CDS5.3712110.16658HepG2HLTF
chr24802698448027013+3'-UTR,CDS4.543635.42280K562FXR2
chr24802653848026586+3'-UTR,CDS5.133737.80708K562FXR2
chr24803391548033973+3'-UTR,CDS,intron-Proximal6.4195820.21564K562LIN28B
chr24803278348032815+3'-UTR,CDS3.530574.59151HepG2G3BP1
chr24802619848026276+3'-UTR,CDS4.442658.42950HepG2FXR2
chr24803391848033963+3'-UTR,CDS3.145966.39923HepG2BCLAF1
chr24802805348028085+3'-UTR,CDS4.1617213.07997K562YBX3
chr24803055948030673+3'-UTR,CDS6.2221015.80431K562FXR2
chr24802810148028105+3'-UTR,CDS3.942868.63185K562YBX3
chr24803057148030655+3'-UTR,CDS4.880195.86049K562LIN28B
chr24802748448027548+3'-UTR,CDS3.4668310.55267K562YBX3
chr24803359148033646+3'-UTR,CDS3.368064.10184HepG2FXR2
chr24802748148027549+3'-UTR,CDS3.647895.52031HepG2GRWD1
chr24803216548032223+3'-UTR,CDS,intron-Proximal4.181375.47926K562AQR
chr24802314748023181+3'-UTR,CDS,intron-Distal4.3653411.98560K562UCHL5
chr24802318148023202+3'-UTR,CDS,intron-Distal4.4968513.40981K562UCHL5
chr24802578448025848+3'-UTR,CDS4.2765015.25564HepG2BCLAF1
chr24802575348025845+3'-UTR,CDS,intron-Proximal4.4448118.40960K562ZNF622
chr24802574848025758+3'-UTR,CDS,intron-Proximal4.8839514.01494K562UCHL5
chr24802625848026301+3'-UTR,CDS5.142068.56325K562FXR2
chr24802818748028230+3'-UTR,CDS4.7502610.64218HepG2BCLAF1
chr24802773148027782+3'-UTR,CDS3.855316.24385K562PUM2
chr24802576248025788+3'-UTR,CDS4.3711017.13945K562UCHL5
chr24803277248032839+3'-UTR,CDS4.227555.05078K562FXR1
chr24803359848033638+3'-UTR,CDS3.054083.17744HepG2GRWD1
chr24802683748026882+3'-UTR,CDS3.336113.20659K562SND1
chr24802629848026344+3'-UTR,CDS3.263226.50801HepG2BCLAF1
chr24802575848025862+3'-UTR,CDS3.406209.68139HepG2FXR2
chr24801809148018138+3'-UTR,5'-UTR,CDS,intron-Distal5.007966.23448K562FXR2
chr24803204848032114+3'-UTR,CDS,intron-Proximal3.407226.69265K562FMR1
chr24802306648023114+3'-UTR,CDS,intron-Distal3.017575.60276HepG2BCLAF1
chr24802591248026013+3'-UTR,CDS3.194898.46305K562ZNF622
chr24803070748030771+3'-UTR,CDS3.8680715.79153HepG2BCLAF1
chr24803377848033790+3'-UTR,CDS5.5592913.70562K562LIN28B
chr24802663648026697+3'-UTR,CDS5.400479.49599K562FMR1
chr24802605448026121+3'-UTR,CDS5.440888.37059HepG2G3BP1
chr24802773348027815+3'-UTR,CDS3.438449.86954HepG2BCLAF1
chr24803283048032846+3'-UTR,CDS4.520695.12780HepG2G3BP1
chr24803056348030618+3'-UTR,CDS3.895113.36587K562FXR1
chr24802578848025861+3'-UTR,CDS4.035124.40203K562SRSF7
chr24802825248028294+3'-UTR,CDS4.848665.42280K562FXR2
chr24802318348023238+3'-UTR,CDS,intron-Distal,intron-Proximal3.456855.43815HepG2PRPF8
chr24802588848026022+3'-UTR,CDS4.0080422.57455K562UCHL5
chr24802596348026026+3'-UTR,CDS3.8418211.24090HepG2G3BP1
chr24803076948030816+3'-UTR,CDS3.859736.49445HepG2G3BP1
chr24803277548032835+3'-UTR,CDS3.524894.48452HepG2FXR2
chr24802808548028101+3'-UTR,CDS3.620669.54031K562YBX3
chr24802593348026010+3'-UTR,CDS3.366298.06964HepG2HLTF
chr24803077148030814+3'-UTR,CDS3.992258.66838HepG2BCLAF1
chr24802810548028147+3'-UTR,CDS3.175087.44878K562YBX3
chr24802578848025859+3'-UTR,CDS5.2120636.62919K562UCHL5
chr24803071848030776+3'-UTR,CDS3.563637.40684HepG2FXR2
chr24802664148026675+3'-UTR,CDS3.821417.65975HepG2BCLAF1
chr24803061848030655+3'-UTR,CDS3.686133.55391K562FXR1
chr24802592948025981+3'-UTR,CDS3.653645.20920HepG2FXR2
chr24802315448023199+3'-UTR,CDS,intron-Distal4.804834.86986HepG2FXR2
chr24803334348033367+3'-UTR,CDS4.492804.54659HepG2G3BP1
chr24802594948026006+3'-UTR,CDS3.392887.05348K562FXR2
chr24802573248025784+3'-UTR,CDS,intron-Proximal3.184454.76453K562GPKOW
chr24803204848032111+3'-UTR,CDS,intron-Proximal5.476838.89821K562FXR2
chr24802612548026141+3'-UTR,CDS3.909845.85226K562UCHL5
chr24802794848028014+3'-UTR,CDS3.653646.45305HepG2FXR2
chr24802578048025844+3'-UTR,CDS3.526958.13547K562XRCC6
chr24802795148028046+3'-UTR,CDS5.515708.66806HepG2G3BP1
chr24802783848027874+3'-UTR,CDS3.198865.07457HepG2BCLAF1
chr24802573048025832+3'-UTR,CDS,intron-Proximal4.922465.58786HepG2TRA2A
chr24802573248025780+3'-UTR,CDS,intron-Proximal4.618725.32906HepG2AQR
chr24802707948027153+3'-UTR,CDS3.153256.66257HepG2G3BP1
chr24802578048025837+3'-UTR,CDS3.652284.57180HepG2AQR
chr24802316048023189+3'-UTR,CDS,intron-Distal4.054106.23296HepG2BCLAF1
chr24802573248025784+3'-UTR,CDS,intron-Proximal4.818008.35000K562U2AF2
chr24802604348026116+3'-UTR,CDS3.083196.05608HepG2HLTF
chr24802315448023200+3'-UTR,CDS,intron-Distal4.411965.13243HepG2GRWD1
chr24801067148010749+5'-UTR,intron-Distal,intron-Proximal5.292989.90275HepG2GTF2F1
chr24801064248010761+5'-UTR,intron-Distal,intron-Proximal5.8328014.63797HepG2PRPF4
chr24801105348011117+5'-UTR,intron-Distal5.8212522.69653HepG2FAM120A
chr24801068848010767+5'-UTR,intron-Distal,intron-Proximal4.872776.36475K562CSTF2T
chr24801128748011367+5'-UTR,intron-Distal,intron-Proximal5.198099.28688HepG2GTF2F1
chr24801065948010767+5'-UTR,intron-Distal,intron-Proximal4.7824018.11117HepG2FAM120A
chr24801070348010763+5'-UTR,intron-Distal,intron-Proximal4.0004210.45405HepG2CSTF2T
chr24801131548011403+5'-UTR,intron-Distal,intron-Proximal3.9740810.19162K562CSTF2T
chr24801029048010415+5'-UTR,CDS,intron-Distal5.1307014.51071K562FXR2
chr24801082948010884+5'-UTR,intron-Distal4.119069.35150HepG2FAM120A
chr24801118648011296+5'-UTR,intron-Distal,intron-Proximal3.836785.27813K562EWSR1
chr24801105448011214+5'-UTR,intron-Distal4.0207910.45965K562CSTF2T
chr24801066648010763+5'-UTR,intron-Distal,intron-Proximal3.677373.67595K562EWSR1
chr24801124048011311+5'-UTR,intron-Distal,intron-Proximal4.0989310.93103HepG2CSTF2T
chr24801815248018244+5'-UTR,CDS,intron-Distal4.2540918.50725K562PUM2
chr24801123348011315+5'-UTR,intron-Distal,intron-Proximal5.216629.97545K562CSTF2T
chr24801105248011119+5'-UTR,intron-Distal4.486394.95463K562GTF2F1
chr24801111548011167+5'-UTR,intron-Distal3.632177.44912HepG2CSTF2T
chr24801133348011377+5'-UTR,intron-Distal,intron-Proximal3.364484.35063HepG2PRPF4
chr24801819948018258+5'-UTR,CDS,intron-Distal3.374864.76162K562IGF2BP2
chr24801083248010895+5'-UTR,intron-Distal3.516057.07923HepG2CSTF2T
chr24801088448010944+5'-UTR,intron-Distal,intron-Proximal4.074888.80665HepG2FAM120A
chr24801131148011399+5'-UTR,intron-Distal,intron-Proximal3.7178410.70688HepG2CSTF2T
chr24801080448010870+5'-UTR,intron-Distal4.828967.20000K562CSTF2T
chr24801116548011333+5'-UTR,intron-Distal,intron-Proximal5.5117924.82325HepG2PRPF4
chr24801080448010867+5'-UTR,intron-Distal4.831166.57216HepG2PRPF4
chr24801031148010456+5'-UTR,CDS,intron-Distal5.0049920.35055K562DDX3X
chr24801105448011123+5'-UTR,intron-Distal5.267476.89521K562AKAP8L
chr24801105548011104+5'-UTR,intron-Distal3.652424.83542K562DROSHA
chr24801105548011110+5'-UTR,intron-Distal4.679416.13530HepG2GTF2F1
chr24801119648011287+5'-UTR,intron-Distal,intron-Proximal4.199178.57449HepG2GTF2F1
chr24801029748010372+5'-UTR,intron-Distal4.1158610.40939K562FMR1
chr24801131848011381+5'-UTR,intron-Distal,intron-Proximal4.420824.46290K562EWSR1
chr24801111948011159+5'-UTR,intron-Distal3.654384.12529K562GTF2F1
chr24801111748011168+5'-UTR,intron-Distal3.691236.41767HepG2FAM120A
chr24801127048011403+5'-UTR,intron-Distal,intron-Proximal3.444884.39072K562HNRNPU
chr24801111548011210+5'-UTR,intron-Distal4.891344.86763HepG2PCBP2
chr24801109548011165+5'-UTR,intron-Distal3.755163.92899HepG2PRPF4
chr24801104848011115+5'-UTR,intron-Distal4.5488511.80524HepG2CSTF2T
chr24801089548010931+5'-UTR,intron-Distal,intron-Proximal3.166083.72734HepG2CSTF2T
chr24801131048011393+5'-UTR,intron-Distal,intron-Proximal3.7647313.02594HepG2FAM120A
chr24801028548010407+5'-UTR,CDS,intron-Distal4.0234211.30599HepG2NCBP2
chr24801067448010773+5'-UTR,intron-Distal,intron-Proximal4.5730310.20769K562GTF2F1
chr24801044148010584+CDS,intron-Distal4.1840912.17712K562FXR2
chr24801037948010435+CDS,intron-Distal4.862879.14311K562PUM2
chr24801040348010542+CDS,intron-Distal3.581504.84415HepG2DDX3X
chr24801050748010564+CDS,intron-Distal4.6876611.65023K562FMR1
chr24801058448010634+CDS,intron-Distal,intron-Proximal5.174446.09979K562FXR2
chr24801059848010632+CDS,intron-Distal,intron-Proximal4.993687.01517K562FMR1
chr24801041448010507+CDS,intron-Distal3.6702610.76935K562FMR1
chr24802829748028445+intron-Distal,intron-Proximal4.247164.07352K562KHSRP
chr24801416448014229+intron-Distal4.017606.67367HepG2ILF3
chr24803038748030502+intron-Distal,intron-Proximal3.542618.76942K562KHSRP
chr24803037648030534+intron-Distal,intron-Proximal3.739223.06355HepG2KHSRP
chr24802110648021171+intron-Distal3.794225.11169HepG2ILF3
chr24801125048011315+intron-Distal,intron-Proximal4.468519.21545K562GTF2F1
chr24801125148011310+intron-Distal,intron-Proximal4.641739.63011HepG2FAM120A
chr24801828648018356+intron-Distal,intron-Proximal4.973047.20766K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MSH6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MSH6 is not available on ENCORE database.

  • 132 RBPs can affect the levels of MSH6.  








The Knockdown/knockout RNA-Seq assay for MSH6 is not available on ENCORE database.





132 RBPs can affect the gene expression of MSH6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MSH6ENSG00000116062.101831.158902229.09040-0.283704.283503.55880HepG2ACO1
MSH6ENSG00000116062.102198.885502971.92430-0.434603.286102.71310HepG2AKAP1
MSH6ENSG00000116062.101935.763902239.61900-0.210402.289801.58560HepG2AKAP8L
MSH6ENSG00000116062.101615.950502459.03780-0.605706.768005.56330HepG2ASCC1
MSH6ENSG00000116062.101791.927102301.34200-0.361003.113201.62170HepG2ATP5C1
MSH6ENSG00000116062.102624.866703616.86450-0.4625011.039609.82140HepG2AUH
MSH6ENSG00000116062.101586.833902399.79630-0.596804.985803.72480HepG2BCCIP
MSH6ENSG00000116062.101294.643102085.40220-0.687807.053905.69800HepG2BCLAF1
MSH6ENSG00000116062.101012.614602726.16690-1.4288040.0815038.29800HepG2BOP1
MSH6ENSG00000116062.101893.005302844.99350-0.5877010.785609.41710HepG2CALR
MSH6ENSG00000116062.102172.881803664.59940-0.754002.616301.67150HepG2CCAR1
MSH6ENSG00000116062.101644.115802336.24870-0.506905.079804.05020HepG2CIRBP
MSH6ENSG00000116062.101590.525802228.67290-0.4867012.0869010.89630HepG2CKAP4
MSH6ENSG00000116062.10939.911301556.35730-0.727605.065704.02640HepG2CNOT7
MSH6ENSG00000116062.101533.131902502.72740-0.7070010.288409.04510HepG2CPSF6
MSH6ENSG00000116062.101592.307402100.03040-0.399303.925802.61700HepG2CPSF7
MSH6ENSG00000116062.101560.390202023.67210-0.375105.106903.72110HepG2YBX3
MSH6ENSG00000116062.102137.211203207.98920-0.5859014.2017012.96780HepG2CELF1
MSH6ENSG00000116062.102203.869503449.44180-0.6463025.2943023.47820HepG2DAZAP1
MSH6ENSG00000116062.101667.151102026.46050-0.281602.983701.78480HepG2DDX1
MSH6ENSG00000116062.101381.732902314.11780-0.744007.598906.53090HepG2DDX21
MSH6ENSG00000116062.101514.204102846.92140-0.9108013.9841012.68530HepG2DDX3X
MSH6ENSG00000116062.101137.541202359.41130-1.0525014.7267013.13020HepG2DDX55
MSH6ENSG00000116062.101737.701302188.99520-0.333102.678601.68220HepG2DDX5
MSH6ENSG00000116062.101600.057302445.46360-0.612005.846204.97830HepG2DDX6
MSH6ENSG00000116062.101254.741201916.52000-0.611108.269706.66990HepG2DHX30
MSH6ENSG00000116062.101856.068902132.65280-0.200402.070501.47180HepG2DKC1
MSH6ENSG00000116062.101543.078501987.04460-0.364804.942604.02770HepG2DNAJC21
MSH6ENSG00000116062.101061.056801969.57070-0.8924033.9440031.90510HepG2DNAJC2
MSH6ENSG00000116062.101605.262802082.78170-0.375702.933301.98690HepG2EEF2
MSH6ENSG00000116062.101289.675601736.41520-0.429103.666302.38070HepG2EFTUD2
MSH6ENSG00000116062.101284.788002350.98350-0.8717012.7028011.49320HepG2EIF2S1
MSH6ENSG00000116062.101017.793701690.81810-0.732308.068106.59920HepG2EIF3D
MSH6ENSG00000116062.101501.865702598.16150-0.790709.347308.18010HepG2EIF4A3
MSH6ENSG00000116062.102831.462003403.02940-0.265303.993803.02130HepG2EIF4G1
MSH6ENSG00000116062.102085.223503259.89460-0.644609.373107.90950HepG2EIF4G2
MSH6ENSG00000116062.102842.381204152.79380-0.5470015.3808014.15030HepG2ETF1
MSH6ENSG00000116062.101168.979901505.47400-0.365002.638501.76480HepG2GEMIN5
MSH6ENSG00000116062.101669.500502220.36180-0.411403.210902.10970HepG2GNB2L1
MSH6ENSG00000116062.102067.912902836.92070-0.456203.978803.22270HepG2GPKOW
MSH6ENSG00000116062.101296.902802006.08180-0.629308.947907.88330HepG2HNRNPA1
MSH6ENSG00000116062.102432.506103170.10410-0.382107.052105.67860HepG2HNRNPA2B1
MSH6ENSG00000116062.101270.528302231.41910-0.8125013.9971012.55360HepG2HNRNPC
MSH6ENSG00000116062.101823.514202457.75470-0.430607.948906.80980HepG2HNRNPF
MSH6ENSG00000116062.102743.321103142.19750-0.195903.009302.30920HepG2HNRNPL
MSH6ENSG00000116062.101322.082202707.33620-1.0341019.3273017.88950HepG2HNRNPLL
MSH6ENSG00000116062.101659.290302420.19070-0.544608.531707.32900HepG2IGF2BP1
MSH6ENSG00000116062.101486.005602471.80500-0.734109.772708.59110HepG2IGF2BP2
MSH6ENSG00000116062.101545.840802319.57200-0.585502.275201.39030HepG2IGF2BP3
MSH6ENSG00000116062.101486.064802264.24540-0.6075019.8152018.06380HepG2ILF2
MSH6ENSG00000116062.101749.515202037.70980-0.220002.981401.92770HepG2KIF1C
MSH6ENSG00000116062.102253.198903866.36940-0.779002.893802.04400HepG2LARP4
MSH6ENSG00000116062.102008.090402622.20420-0.385003.040802.35310HepG2MAGOH
MSH6ENSG00000116062.101251.463701769.63870-0.499802.484201.48380HepG2METAP2
MSH6ENSG00000116062.101647.364802084.03000-0.339203.005702.16350HepG2MSI2
MSH6ENSG00000116062.102007.276602761.38430-0.460202.843901.86200HepG2MTPAP
MSH6ENSG00000116062.102703.762803420.45590-0.339204.577703.59710HepG2NOL12
MSH6ENSG00000116062.101169.157702166.11540-0.889606.087804.42580HepG2NONO
MSH6ENSG00000116062.101811.321702403.75770-0.408203.262702.48110HepG2PABPC4
MSH6ENSG00000116062.101964.313602499.49030-0.347605.910705.07680HepG2PCBP1
MSH6ENSG00000116062.101795.622402688.05210-0.582104.071902.82670HepG2PCBP2
MSH6ENSG00000116062.101605.886701977.08350-0.300003.465502.65050HepG2PPIL4
MSH6ENSG00000116062.10928.550401820.56820-0.9713013.9038012.29490HepG2PRPF8
MSH6ENSG00000116062.101831.119402543.24510-0.4739010.194809.27290HepG2PTBP1
MSH6ENSG00000116062.101953.777303265.10620-0.7409014.1835012.97480HepG2PUF60
MSH6ENSG00000116062.102679.681503466.03280-0.371209.651208.68370HepG2PUM1
MSH6ENSG00000116062.102587.988303463.51440-0.420406.282205.28580HepG2PUM2
MSH6ENSG00000116062.101464.623402270.48300-0.6325017.8732016.55270HepG2PUS1
MSH6ENSG00000116062.102096.851402754.56710-0.393605.800704.94390HepG2QKI
MSH6ENSG00000116062.102278.369203470.93600-0.6073014.9808013.97170HepG2RBM22
MSH6ENSG00000116062.101671.875502129.93540-0.349302.567501.54680HepG2RCC2
MSH6ENSG00000116062.102363.572502830.45390-0.260103.623803.02120HepG2NELFE
MSH6ENSG00000116062.101081.850302647.54470-1.2912034.0299032.24450HepG2RPLP0
MSH6ENSG00000116062.101553.519802547.97120-0.713805.602104.28180HepG2RPS10
MSH6ENSG00000116062.10855.888301645.18500-0.9428018.2296016.85600HepG2RPS19
MSH6ENSG00000116062.101674.014702419.06700-0.531105.885904.74290HepG2RPS2
MSH6ENSG00000116062.10810.508701800.96520-1.1519012.4348010.96610HepG2RRP9
MSH6ENSG00000116062.101483.129801974.02370-0.412507.915806.91040HepG2SAFB2
MSH6ENSG00000116062.101078.377401471.54020-0.448502.970701.61420HepG2SART3
MSH6ENSG00000116062.101163.323801651.28730-0.505304.667503.46100HepG2SERBP1
MSH6ENSG00000116062.101958.427902996.08070-0.613405.061404.13060HepG2SF3A3
MSH6ENSG00000116062.101619.970002679.66110-0.7261011.5475010.19860HepG2SF3B1
MSH6ENSG00000116062.101995.836602647.98940-0.407907.810706.89760HepG2SF3B4
MSH6ENSG00000116062.101127.592502302.02130-1.0297050.0968048.00300HepG2SMN1
MSH6ENSG00000116062.101658.615302644.10880-0.672805.833204.40800HepG2SMNDC1
MSH6ENSG00000116062.101799.695203286.32840-0.868702.753601.44580HepG2SNRNP200
MSH6ENSG00000116062.102094.019603920.23950-0.9047043.6552042.28980HepG2SRFBP1
MSH6ENSG00000116062.103162.261802763.869300.194202.269601.83050HepG2SRSF1
MSH6ENSG00000116062.102201.710702883.51480-0.389202.557201.59860HepG2SRSF3
MSH6ENSG00000116062.102361.749003223.79090-0.448909.950008.86110HepG2SRSF5
MSH6ENSG00000116062.101457.908302414.64910-0.7279020.9837019.39360HepG2SRSF7
MSH6ENSG00000116062.101985.671502248.50460-0.179302.047701.55850HepG2SRSF9
MSH6ENSG00000116062.102748.332603403.59990-0.308505.702605.01720HepG2SSB
MSH6ENSG00000116062.101274.147101719.96240-0.432803.061001.76690HepG2STAU1
MSH6ENSG00000116062.101730.609802424.31080-0.486302.887801.65920HepG2SUB1
MSH6ENSG00000116062.103309.087003666.36050-0.147901.859901.33120HepG2SUCLG1
MSH6ENSG00000116062.101160.352802348.89470-1.0174014.2802012.94750HepG2SUPV3L1
MSH6ENSG00000116062.101396.016502639.12170-0.9187017.1155015.57310HepG2TARDBP
MSH6ENSG00000116062.101015.274501574.46540-0.633005.380504.05790HepG2TFIP11
MSH6ENSG00000116062.10959.959202153.81370-1.1658034.1402032.74190HepG2TIAL1
MSH6ENSG00000116062.101355.261402173.16400-0.6812018.3983017.11390HepG2TRIM56
MSH6ENSG00000116062.102471.832503376.36720-0.449904.152803.11670HepG2UBE2L3
MSH6ENSG00000116062.10821.223901387.65820-0.756808.626907.28430HepG2UCHL5
MSH6ENSG00000116062.101613.712402657.06150-0.7194023.3990021.75860HepG2UPF1
MSH6ENSG00000116062.101967.528002565.29460-0.382707.304806.40800HepG2UTP3
MSH6ENSG00000116062.101724.258902852.77420-0.726406.408704.84370HepG2XRCC6
MSH6ENSG00000116062.10863.872602922.26470-1.75820141.53230139.29580HepG2ZNF622
MSH6ENSG00000116062.104551.182506346.10120-0.479606.554405.71400K562AQR
MSH6ENSG00000116062.103487.849903998.13580-0.197002.650801.71350K562BCLAF1
MSH6ENSG00000116062.102553.279203729.01520-0.546406.759105.37810K562BOP1
MSH6ENSG00000116062.105262.285707987.65240-0.602102.559901.54610K562CNOT7
MSH6ENSG00000116062.103154.243103965.05700-0.330003.792602.87480K562CPSF6
MSH6ENSG00000116062.102905.981003505.62250-0.270603.940902.33020K562DDX27
MSH6ENSG00000116062.102858.060703582.82250-0.326103.489002.30290K562DDX3X
MSH6ENSG00000116062.105410.692206572.61600-0.280704.757603.93670K562DDX47
MSH6ENSG00000116062.102904.516003632.53300-0.322704.484902.69000K562DDX6
MSH6ENSG00000116062.102616.609603688.09760-0.495205.586004.26260K562EFTUD2
MSH6ENSG00000116062.103153.602703935.52820-0.319605.272903.57650K562EIF2S1
MSH6ENSG00000116062.103971.703304992.48650-0.330005.456204.49610K562EIF2S2
MSH6ENSG00000116062.102582.944603949.01260-0.612506.173804.54290K562EIF3D
MSH6ENSG00000116062.103083.070303586.84840-0.218302.336601.60220K562EIF3G
MSH6ENSG00000116062.102841.524903370.99730-0.246502.611301.50250K562EIF4B
MSH6ENSG00000116062.103131.166204034.26640-0.365603.621102.63720K562FMR1
MSH6ENSG00000116062.102680.378303419.36770-0.351302.909801.97120K562FTO
MSH6ENSG00000116062.105125.303904024.038300.348902.120801.51380K562G3BP2
MSH6ENSG00000116062.102767.990303785.68880-0.451705.741704.60250K562GPKOW
MSH6ENSG00000116062.104471.930206653.05130-0.5731010.523309.02220K562GRSF1
MSH6ENSG00000116062.102076.327403700.98830-0.8339014.6209013.33390K562HNRNPC
MSH6ENSG00000116062.104967.793406855.24500-0.464605.913904.76440K562HSPD1
MSH6ENSG00000116062.103494.903904715.42230-0.432105.173103.44440K562IGF2BP3
MSH6ENSG00000116062.102195.023403232.41400-0.558404.535503.30560K562KRR1
MSH6ENSG00000116062.102739.918103695.23990-0.431505.366404.12060K562METAP2
MSH6ENSG00000116062.104784.677705631.08880-0.235006.118505.06900K562NSUN2
MSH6ENSG00000116062.102876.130203612.98570-0.329103.080401.56510K562PHF6
MSH6ENSG00000116062.104623.442605739.80820-0.312002.882502.04380K562PPIG
MSH6ENSG00000116062.102840.136303588.93900-0.337602.875102.11210K562PRPF8
MSH6ENSG00000116062.102386.652503318.20510-0.475405.491504.15590K562PSIP1
MSH6ENSG00000116062.107631.026509026.17760-0.242202.312301.56660K562PUF60
MSH6ENSG00000116062.108074.557609406.85170-0.220302.851901.87680K562PUM2
MSH6ENSG00000116062.103716.437404502.58440-0.276803.287001.32760K562QKI
MSH6ENSG00000116062.105153.996604318.636200.255003.236802.60350K562RBM15
MSH6ENSG00000116062.103559.685804540.54310-0.351103.487902.53910K562RBM22
MSH6ENSG00000116062.103414.991804425.54360-0.374003.347501.77930K562RBM34
MSH6ENSG00000116062.102200.551703026.86060-0.460006.529205.00550K562RCC2
MSH6ENSG00000116062.103807.564204778.00600-0.327502.786701.68960K562NELFE
MSH6ENSG00000116062.102813.345903655.86700-0.377902.743801.93180K562RPS19
MSH6ENSG00000116062.102235.777503138.02110-0.489105.203603.76790K562RPS3
MSH6ENSG00000116062.103522.281704183.99560-0.248402.532901.71630K562SF3B4
MSH6ENSG00000116062.102150.074402869.44210-0.416403.959502.66360K562SRFBP1
MSH6ENSG00000116062.105054.747505692.65640-0.171502.725501.79540K562SRPK2
MSH6ENSG00000116062.102375.324103029.49770-0.351003.871002.59730K562SRSF4
MSH6ENSG00000116062.103398.766804382.78930-0.366803.680102.43590K562SRSF5
MSH6ENSG00000116062.102673.581203475.09860-0.378302.896201.85450K562SUPV3L1
MSH6ENSG00000116062.103323.150904697.48840-0.499304.948203.98760K562TARDBP
MSH6ENSG00000116062.103522.308304531.16390-0.363404.592203.49750K562TIA1
MSH6ENSG00000116062.102205.610203191.62760-0.533105.640204.25890K562TIAL1
MSH6ENSG00000116062.102644.846703390.05370-0.358103.646602.53260K562TRIM56
MSH6ENSG00000116062.105263.011403900.267500.432203.717802.40940K562U2AF1
MSH6ENSG00000116062.105143.591904028.236400.352504.764003.71390K562U2AF2
MSH6ENSG00000116062.102681.929503677.84890-0.455604.638303.28600K562UCHL5
MSH6ENSG00000116062.104895.950605970.76070-0.286305.794604.79860K562UPF1
MSH6ENSG00000116062.104589.643005312.73820-0.211103.314802.39630K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MSH6 is not available on ENCORE database.





7 RBPs can affect the splicing of MSH6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMSH6ENSG00000116062.10chr2+480230324802321248018065480182624802574948028294-0.085000.000040.00074excludedK562AQR
SEMSH6ENSG00000116062.10chr2+480335904803379048033270480334974803391748034084-0.063000.000000.00001excludedK562AQR
SEMSH6ENSG00000116062.10chr2+480230324802320248018065480182624802574948026059-0.069000.000050.00161excludedK562HNRNPC
A3SSMSH6ENSG00000116062.10chr2+4803202548032166480320484803216648030558480308240.169000.000000.00000longerK562AQR
MXEMSH6ENSG00000116062.10chr2+48023032480232124802574948028294480180654801826248030558480308240.138000.002700.036491includedK562DROSHA
MXEMSH6ENSG00000116062.10chr2+4802303248023202480257494802829448018065480182624803055848030824-0.219000.000000.000232includedHepG2BCCIP
MXEMSH6ENSG00000116062.10chr2+4802303248023202480257494802829448018065480182624803055848030824-0.222000.000000.000032includedHepG2XRN2
MXEMSH6ENSG00000116062.10chr2+48023032480232024802574948028294480180654801826248030558480308240.111000.000440.004121includedHepG2U2AF2
MXEMSH6ENSG00000116062.10chr2+4801806548018262480257494802829448010220480106324803055848030824-0.090000.000280.054032includedK562HNRNPM

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MSH6 is not avaliable on ENCORE database.