RPRD1A

General Information

Gene Name       : RPRD1A
Gene ID             : ENSG00000141425.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RPRD1A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RPRD1AENSG00000141425.1725.3922.9024.14ENCSR000AEF
HepG2RPRD1AENSG00000141425.1730.1036.9133.50ENCSR985KAT
K562RPRD1AENSG00000141425.1743.8945.5244.70ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RPRD1A is not avaliable on ENCORE database.



Proteins bound to RNA
  • RPRD1A RNA is bound by 31 proteins.  







eCLIP assay for RPRD1A is not avaliable on ENCORE database.





31 proteins are bound to RPRD1A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr183360567033605757-3'-UTR,intron-Distal3.5223322.06957K562KHSRP
chr183357147533571571-3'-UTR,intron-Distal4.156253.57526HepG2IGF2BP1
chr183360559433605676-3'-UTR,CDS,intron-Distal4.3339715.91159HepG2U2AF2
chr183357046533570559-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.458393.61668HepG2IGF2BP1
chr183360559233605688-3'-UTR,CDS,intron-Distal5.2604012.37681K562U2AF2
chr183357133933571409-3'-UTR,intron-Distal3.363773.85040HepG2IGF2BP1
chr183357280633572843-3'-UTR,intron-Distal3.447835.12038K562PUM2
chr183360567633605739-3'-UTR,intron-Distal3.827839.90849HepG2U2AF2
chr183360544333605564-3'-UTR,CDS,intron-Distal,intron-Proximal,polyA_site3.9872810.61427HepG2CSTF2
chr183360559533605681-3'-UTR,CDS,intron-Distal3.705544.94700K562U2AF1
chr183361366633613723-3'-UTR,CDS,intron-Distal,intron-Proximal3.420666.59678HepG2BCLAF1
chr183360548433605567-3'-UTR,CDS,intron-Distal,intron-Proximal,polyA_site5.250865.26571K562FMR1
chr183357134733571424-3'-UTR,intron-Distal3.192563.82829K562IGF2BP2
chr183360561733605684-3'-UTR,CDS,intron-Distal3.5642012.18751HepG2SF3A3
chr183364732333647491-5'-UTR,CDS,intron-Distal3.059779.74763HepG2DDX3X
chr183364720933647302-5'-UTR,CDS,intron-Distal4.4390311.18278HepG2GRWD1
chr183364721533647227-5'-UTR,CDS,intron-Distal3.117995.34378K562YBX3
chr183364721633647315-5'-UTR,CDS,intron-Distal3.7061112.47035K562DDX24
chr183364745633647516-5'-UTR,intron-Distal,intron-Proximal4.790276.68186HepG2NCBP2
chr183364721133647268-5'-UTR,CDS,intron-Distal3.350505.60389HepG2PPIG
chr183361081133610869-CDS,intron-Distal,intron-Proximal4.007274.70460K562DDX24
chr183361367033613706-CDS,intron-Distal,intron-Proximal3.820493.56019HepG2GRWD1
chr183361076933610826-CDS,intron-Distal,intron-Proximal3.032686.70485HepG2GRWD1
chr183361359933613692-CDS,intron-Distal,intron-Proximal4.089696.71940K562PRPF8
chr183360724933607274-CDS,intron-Distal,intron-Proximal3.570807.50303K562UCHL5
chr183361077033610811-CDS,intron-Distal,intron-Proximal4.308006.80284K562DDX24
chr183361091733610970-CDS,intron-Distal,intron-Proximal5.710684.68690HepG2PRPF8
chr183360714933607206-CDS,intron-Distal3.322825.79905HepG2BCLAF1
chr183361076833610824-CDS,intron-Distal,intron-Proximal3.8653413.66720K562UCHL5
chr183360725133607273-CDS,intron-Distal4.189485.20093K562DDX24
chr183362275433622866-intron-Distal3.631308.34206K562KHSRP
chr183360010233600232-intron-Distal3.5595212.62740HepG2SUGP2
chr183358175133581827-intron-Distal4.045024.30215K562SAFB2
chr183363551433635567-intron-Distal4.242494.79477K562KHSRP
chr183364635533646424-intron-Distal4.856174.57385K562FMR1
chr183359158833591708-intron-Distal3.280764.28038HepG2HNRNPC
chr183359504733595151-intron-Distal5.009484.67055K562EIF4G2
chr183363367133633768-intron-Distal3.6983610.15363K562QKI
chr183364622233646317-intron-Distal4.3019114.81080K562KHSRP
chr183361973333619807-intron-Distal4.191834.79379K562KHSRP
chr183362757833627638-intron-Distal4.233663.60235HepG2HNRNPM
chr183359786933597944-intron-Distal4.126283.80778HepG2QKI
chr183364651033646599-intron-Distal3.331504.03817HepG2KHSRP
chr183364614233646222-intron-Distal3.804547.12499K562KHSRP
chr183361445233614548-intron-Distal4.023434.37030K562KHSRP
chr183359855033598624-intron-Distal3.056874.46004HepG2SUGP2
chr183360264533602761-intron-Distal5.037196.79309HepG2ILF3
chr183361559233615674-intron-Distal4.499786.51328K562KHSRP
chr183363400733634070-intron-Distal3.411137.82382HepG2QKI
chr183364623633646308-intron-Distal4.362204.00239HepG2KHSRP
chr183364707133647117-intron-Distal4.010034.14792HepG2XPO5
chr183361975733619847-intron-Distal4.924397.67146K562TARDBP
chr183360548233605556-intron-Distal,intron-Proximal4.161816.22996K562CSTF2T
chr183363476333634818-intron-Distal4.524603.91475K562PTBP1
chr183363440033634488-intron-Distal5.5636815.30460K562QKI
chr183364633133646427-intron-Distal3.173493.31721HepG2CSTF2
chr183363366833633705-intron-Distal5.163298.96592HepG2QKI
chr183361053033610626-intron-Distal4.736757.69142K562KHSRP
chr183363370533633796-intron-Distal4.0807116.94432HepG2QKI
chr183359504533595125-intron-Distal5.134779.16624K562TARDBP
chr183363547233635514-intron-Distal3.878683.71397K562KHSRP
chr183359721333597284-intron-Distal4.436974.92524K562TARDBP
chr183363390633633987-intron-Distal4.058317.33240HepG2PCBP2
chr183363387233633946-intron-Distal3.652526.58138HepG2QKI
chr183362307433623159-intron-Distal4.749747.69142K562KHSRP
chr183364708233647174-intron-Distal3.236544.38249K562RBM15
chr183364392033644029-intron-Distal3.942367.12499K562KHSRP
chr183362299133623074-intron-Distal3.759989.20203K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RPRD1A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RPRD1A is not available on ENCORE database.

  • 96 RBPs can affect the levels of RPRD1A.  








The Knockdown/knockout RNA-Seq assay for RPRD1A is not available on ENCORE database.





96 RBPs can affect the gene expression of RPRD1A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RPRD1AENSG00000141425.132520.986403448.51170-0.452003.562602.96900HepG2AKAP1
RPRD1AENSG00000141425.132158.190602825.32390-0.388607.141606.12180HepG2AUH
RPRD1AENSG00000141425.13868.143601547.85810-0.834308.280506.61310HepG2BCCIP
RPRD1AENSG00000141425.131652.978301295.469400.351502.943602.32870HepG2BOP1
RPRD1AENSG00000141425.132077.896201740.359400.255602.254001.55260HepG2CALR
RPRD1AENSG00000141425.131255.848402669.27500-1.0878014.6400012.54330HepG2CCAR1
RPRD1AENSG00000141425.132046.634302710.92740-0.405503.563802.69430HepG2CIRBP
RPRD1AENSG00000141425.131011.622201796.57200-0.8286011.5142010.34550HepG2CKAP4
RPRD1AENSG00000141425.131174.372702065.09380-0.814306.415005.24950HepG2CNOT7
RPRD1AENSG00000141425.131885.784302340.95140-0.311904.280903.51290HepG2CELF1
RPRD1AENSG00000141425.132198.336002517.28210-0.195502.797002.05130HepG2DAZAP1
RPRD1AENSG00000141425.13840.017801645.60200-0.970106.638804.94330HepG2DDX1
RPRD1AENSG00000141425.131158.982501511.69370-0.383303.327702.58850HepG2DDX21
RPRD1AENSG00000141425.131063.472203303.56660-1.6352036.2284034.24400HepG2DDX3X
RPRD1AENSG00000141425.131505.144402032.05390-0.433004.410602.79510HepG2DDX47
RPRD1AENSG00000141425.131700.010102837.47110-0.739107.232406.27380HepG2DDX6
RPRD1AENSG00000141425.131087.825401683.44170-0.630006.889905.50410HepG2EEF2
RPRD1AENSG00000141425.131862.957002728.08800-0.550305.713204.87910HepG2EIF2S1
RPRD1AENSG00000141425.13890.075401366.59960-0.618605.619904.36180HepG2EIF3D
RPRD1AENSG00000141425.132017.482402483.29420-0.299704.544303.51340HepG2EIF4G1
RPRD1AENSG00000141425.131464.985103243.80980-1.1468052.1306050.14790HepG2ETF1
RPRD1AENSG00000141425.13954.798401221.36080-0.355203.299802.00870HepG2FAM120A
RPRD1AENSG00000141425.131018.986701951.35950-0.9373012.2156010.76560HepG2FIP1L1
RPRD1AENSG00000141425.131928.785203041.51590-0.657108.107706.97010HepG2FXR1
RPRD1AENSG00000141425.132082.961002821.72770-0.437903.596102.84190HepG2G3BP1
RPRD1AENSG00000141425.131921.405102995.26540-0.640508.052406.51480HepG2G3BP2
RPRD1AENSG00000141425.13865.791801216.78640-0.491004.439303.29540HepG2GEMIN5
RPRD1AENSG00000141425.131158.935401653.63960-0.512804.392603.10150HepG2GNB2L1
RPRD1AENSG00000141425.131196.172901629.13180-0.445702.142601.56720HepG2HNRNPA1
RPRD1AENSG00000141425.131217.053001704.74620-0.486203.398401.84240HepG2HNRNPAB
RPRD1AENSG00000141425.131767.375002856.61110-0.6927010.190208.92290HepG2HNRNPK
RPRD1AENSG00000141425.131969.548602293.10730-0.219403.383602.64480HepG2HNRNPL
RPRD1AENSG00000141425.131035.015501346.47040-0.379503.418002.37050HepG2HNRNPM
RPRD1AENSG00000141425.13959.344901800.02690-0.907907.027906.09740HepG2HNRNPU
RPRD1AENSG00000141425.131913.495202868.32270-0.584006.611905.60940HepG2IGF2BP2
RPRD1AENSG00000141425.131976.186702884.85900-0.545804.259302.99020HepG2KHSRP
RPRD1AENSG00000141425.131247.482201701.14630-0.447504.034802.57340HepG2LIN28B
RPRD1AENSG00000141425.131167.830903042.57540-1.3815030.3064028.32050HepG2MAGOH
RPRD1AENSG00000141425.132031.025603059.68960-0.591205.882904.98890HepG2MATR3
RPRD1AENSG00000141425.131080.158103131.83170-1.5358035.4023033.34730HepG2NCBP2
RPRD1AENSG00000141425.131324.050002151.96660-0.700705.912003.81960HepG2NKRF
RPRD1AENSG00000141425.132134.854702496.12190-0.225602.239201.55290HepG2NOL12
RPRD1AENSG00000141425.13653.751001021.66120-0.644103.627901.79730HepG2PA2G4
RPRD1AENSG00000141425.131902.963602716.38150-0.5134011.8124010.69890HepG2PCBP1
RPRD1AENSG00000141425.13854.466601130.14030-0.403404.043802.55000HepG2PKM
RPRD1AENSG00000141425.13894.437101174.30060-0.392702.288001.55000HepG2PRPF8
RPRD1AENSG00000141425.131814.972102764.04540-0.6068015.6042014.50770HepG2PTBP1
RPRD1AENSG00000141425.131329.743102529.29760-0.9276043.8429042.06250HepG2PUM1
RPRD1AENSG00000141425.131412.559601830.05780-0.373603.500002.82570HepG2PUS1
RPRD1AENSG00000141425.132441.604502993.47470-0.294003.475902.78600HepG2QKI
RPRD1AENSG00000141425.131299.530201834.69280-0.497502.405101.74480HepG2RAVER1
RPRD1AENSG00000141425.131461.651602711.23310-0.8913026.7145025.43420HepG2RBM22
RPRD1AENSG00000141425.131077.606001586.12070-0.557705.063103.61830HepG2RCC2
RPRD1AENSG00000141425.132363.219103076.09580-0.380306.967406.17730HepG2NELFE
RPRD1AENSG00000141425.132426.586802865.00390-0.239603.154602.50190HepG2RECQL
RPRD1AENSG00000141425.13817.582601329.74720-0.701709.978508.89960HepG2RPS19
RPRD1AENSG00000141425.131362.186901838.84810-0.432903.540502.32090HepG2RPS5
RPRD1AENSG00000141425.13808.810501334.63130-0.722608.590906.96350HepG2SERBP1
RPRD1AENSG00000141425.131472.949402144.66480-0.542003.665402.88610HepG2SF3A3
RPRD1AENSG00000141425.132349.071502877.68200-0.292804.418803.69830HepG2SF3B4
RPRD1AENSG00000141425.131152.411201869.55660-0.698004.338603.56500HepG2SMN1
RPRD1AENSG00000141425.133625.865803062.252800.243603.975803.40700HepG2SRFBP1
RPRD1AENSG00000141425.132235.628703003.69580-0.426109.391208.63640HepG2SRSF1
RPRD1AENSG00000141425.13876.894101370.25710-0.644005.316603.88850HepG2SRSF3
RPRD1AENSG00000141425.131566.257002352.51240-0.5869014.2854013.01860HepG2SRSF5
RPRD1AENSG00000141425.132065.482002443.68270-0.242603.308102.71540HepG2SRSF9
RPRD1AENSG00000141425.131201.076002658.78630-1.1464052.1427050.60360HepG2SSB
RPRD1AENSG00000141425.131671.582202675.51640-0.6786023.3074021.78850HepG2SUCLG1
RPRD1AENSG00000141425.131467.811202222.17690-0.598302.496301.47970HepG2TBRG4
RPRD1AENSG00000141425.131979.550702480.77670-0.325603.411602.48810HepG2TIA1
RPRD1AENSG00000141425.131211.773601749.47200-0.529803.200702.66920HepG2TIAL1
RPRD1AENSG00000141425.131207.899001764.67140-0.546903.563102.94090HepG2TRIM56
RPRD1AENSG00000141425.13874.232901669.36630-0.9332014.4927013.01990HepG2U2AF1
RPRD1AENSG00000141425.131252.961402463.78400-0.9755014.8369012.87500HepG2UBE2L3
RPRD1AENSG00000141425.13564.64430895.04620-0.664605.855104.74130HepG2UCHL5
RPRD1AENSG00000141425.131626.546301901.99270-0.225702.660401.97300HepG2UPF1
RPRD1AENSG00000141425.131545.405501954.96020-0.339204.617103.30330HepG2UTP18
RPRD1AENSG00000141425.131255.920801836.29470-0.5481011.3847010.30280HepG2UTP3
RPRD1AENSG00000141425.13959.450601491.37970-0.636405.821504.78180HepG2XRN2
RPRD1AENSG00000141425.131150.359202091.82370-0.8627034.1366032.76630HepG2ZNF622
RPRD1AENSG00000141425.132563.141701832.638000.483903.304201.87610HepG2ZRANB2
RPRD1AENSG00000141425.133096.603203886.61470-0.327803.492702.08860K562APOBEC3C
RPRD1AENSG00000141425.132022.732702619.93450-0.373202.723001.30830K562CKAP4
RPRD1AENSG00000141425.132657.940503290.83330-0.308104.482603.05180K562CPEB4
RPRD1AENSG00000141425.131637.388802349.67360-0.521107.659606.34710K562CPSF6
RPRD1AENSG00000141425.131282.250801764.14600-0.460304.022302.73620K562DDX3X
RPRD1AENSG00000141425.132725.197703405.47450-0.321505.234504.37690K562DDX47
RPRD1AENSG00000141425.131706.297002353.51130-0.463908.207807.06910K562EIF2S2
RPRD1AENSG00000141425.131125.585301640.63490-0.543608.424707.03990K562EIF3G
RPRD1AENSG00000141425.131659.508102313.85870-0.479505.307704.10630K562FIP1L1
RPRD1AENSG00000141425.132061.367401606.131800.359902.727701.61120K562FKBP4
RPRD1AENSG00000141425.131726.158602390.86600-0.470005.007303.84990K562FMR1
RPRD1AENSG00000141425.131541.871402026.53050-0.394303.247702.25120K562FTO
RPRD1AENSG00000141425.131566.713801916.67810-0.290903.459902.79450K562FXR1
RPRD1AENSG00000141425.131789.022502243.30680-0.326503.002602.17660K562GPKOW
RPRD1AENSG00000141425.131550.717101850.99720-0.255401.928001.41840K562HNRNPC
RPRD1AENSG00000141425.132175.810102520.44040-0.212102.118401.33830K562HNRNPU
RPRD1AENSG00000141425.131350.116201915.64380-0.504703.566502.49170K562KRR1
RPRD1AENSG00000141425.131535.028702364.45140-0.623205.520204.31940K562MAGOH
RPRD1AENSG00000141425.131785.755002359.83520-0.402202.877201.93480K562MATR3
RPRD1AENSG00000141425.131726.042802189.74030-0.343303.285502.33030K562METAP2
RPRD1AENSG00000141425.131288.794501840.46310-0.514007.340005.37050K562NCBP2
RPRD1AENSG00000141425.133577.570202110.071300.761604.019502.77030K562PABPN1
RPRD1AENSG00000141425.131238.572601641.13430-0.406003.287302.46820K562PRPF8
RPRD1AENSG00000141425.131542.003902297.12390-0.575005.097304.21940K562PTBP1
RPRD1AENSG00000141425.134129.007805111.98220-0.308104.163402.83680K562PUM1
RPRD1AENSG00000141425.131489.227702203.31600-0.565103.311502.38610K562RBM22
RPRD1AENSG00000141425.132065.093102419.77470-0.228702.443801.67440K562SF3A3
RPRD1AENSG00000141425.131818.815302279.26980-0.325602.020401.40970K562TARDBP
RPRD1AENSG00000141425.131579.826502198.53770-0.476803.780602.80300K562TIA1
RPRD1AENSG00000141425.131119.725401681.84380-0.586906.111104.52610K562UCHL5
RPRD1AENSG00000141425.132685.223702313.623800.214802.234601.46730K562WDR43
RPRD1AENSG00000141425.131351.533201712.42900-0.341402.407001.30370K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RPRD1A is not available on ENCORE database.





14 RBPs can affect the splicing of RPRD1A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERPRD1AENSG00000141425.13chr18-336207693362082833613714336138003364721633647493-0.084000.004650.07147excludedK562SRSF1
SERPRD1AENSG00000141425.13chr18-336207693362082833613714336138003364721633647493-0.170000.000000.00000excludedK562AKAP8L
SERPRD1AENSG00000141425.13chr18-3362076933620828336137143361380033647216336474930.071000.002220.02748includedHepG2U2AF2
SERPRD1AENSG00000141425.13chr18-336136703361380033610953336110603364721633647519-0.085000.000460.00733excludedHepG2U2AF2
SERPRD1AENSG00000141425.13chr18-336136703361380033610953336110603364721633647520-0.078000.000000.00002excludedK562AQR
SERPRD1AENSG00000141425.13chr18-336207693362082833613714336138003364721633647493-0.148000.000000.00000excludedK562PUS1
SERPRD1AENSG00000141425.13chr18-336207693362082833613714336138003364721633647493-0.108000.000060.00719excludedK562HNRNPL
SERPRD1AENSG00000141425.13chr18-3362076933620828336137143361380033647216336474930.077000.002510.09542includedHepG2PCBP1
SERPRD1AENSG00000141425.13chr18-336207693362082833613714336138003364721633647493-0.148000.000000.00001excludedK562RBM15
SERPRD1AENSG00000141425.13chr18-336207693362082833613714336138003364721633647493-0.135000.000000.00002excludedK562AGGF1
SERPRD1AENSG00000141425.13chr18-3362076933620828336137143361380033647216336474930.103000.000580.04102includedHepG2SRSF9
SERPRD1AENSG00000141425.13chr18-336207693362082833613714336138003364721633647493-0.068000.000330.06827excludedHepG2PRPF4
SERPRD1AENSG00000141425.13chr18-336207693362082833613714336138003364721633647493-0.119000.001170.02203excludedK562HNRNPC
A3SSRPRD1AENSG00000141425.13chr18-3360714633607354336071463360727333610770336108680.093000.000000.00000longerK562AQR
RIRPRD1AENSG00000141425.13chr18-335697863357326333569786335705583357306433573263-0.144000.005850.09746excludedHepG2UCHL5
RIRPRD1AENSG00000141425.13chr18-335697863357326333569786335705583357306433573263-0.147000.000500.08432excludedHepG2FUS
MXERPRD1AENSG00000141425.13chr18-3361367033613764336207693362082833610953336110603364721633647493-0.169000.000000.000012includedK562RBM15
MXERPRD1AENSG00000141425.13chr18-3361367033613787336207693362082833610953336110603364721633647493-0.169000.000000.000012includedK562RBM15
MXERPRD1AENSG00000141425.13chr18-3361463433614713336207693362086033613670336138003364721633647493-0.069000.006140.042762includedK562AQR
MXERPRD1AENSG00000141425.13chr18-3361463433614713336207693362082833613670336138003364721633647493-0.053000.005630.039772includedK562AQR
MXERPRD1AENSG00000141425.13chr18-3361390633613989336207693362086033613670336138003364721633647493-0.133000.000280.003032includedK562AQR
MXERPRD1AENSG00000141425.13chr18-3361390633613989336207693362082833613670336138003364721633647493-0.109000.000160.001862includedK562AQR
MXERPRD1AENSG00000141425.13chr18-3361390633614051336207693362086033613670336138003364721633647493-0.129000.000080.000972includedK562AQR
MXERPRD1AENSG00000141425.13chr18-3361390633614051336207693362082833613670336138003364721633647493-0.100000.000060.000752includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RPRD1A is not avaliable on ENCORE database.