SCARNA17

General Information

Gene Name       : SCARNA17
Gene ID             : ENSG00000251992.1
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCARNA17)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCARNA17ENSG00000251992.10.000.000.00ENCSR000AEF
HepG2SCARNA17ENSG00000251992.10.000.000.00ENCSR985KAT
K562SCARNA17ENSG00000251992.10.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCARNA17 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCARNA17 RNA is bound by 22 proteins.  







eCLIP assay for SCARNA17 is not avaliable on ENCORE database.





22 proteins are bound to SCARNA17 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr184734064347340725+intron-Distal3.7230233.12204K562ZC3H8
chr184734064647340670+intron-Distal4.06970400.00000HepG2DKC1
chr184734056247340589+intron-Distal4.1608743.75186HepG2PTBP1
chr184734070747340722+intron-Distal4.53594400.00000HepG2PRPF4
chr184734075847340764+intron-Distal3.26158400.00000HepG2PRPF4
chr184734057347340588+intron-Distal7.24461400.00000HepG2DKC1
chr184734064647340805+intron-Distal4.4144256.06222K562PTBP1
chr184734069047340704+intron-Distal4.43220400.00000HepG2SF3A3
chr184734073447340739+intron-Distal3.83760400.00000HepG2PRPF4
chr184734068947340712+intron-Distal5.49317400.00000HepG2NOLC1
chr184734079047340798+intron-Distal5.42004400.00000HepG2NOLC1
chr184734065347340669+intron-Distal4.58351400.00000HepG2PRPF4
chr184734068547340689+intron-Distal5.48910400.00000HepG2NOLC1
chr184734069447340699+intron-Distal4.34178400.00000HepG2DKC1
chr184734068947340704+intron-Distal4.44897400.00000HepG2GTF2F1
chr184734078047340790+intron-Distal5.26081400.00000HepG2NOLC1
chr184734066947340680+intron-Distal4.68263400.00000HepG2PRPF4
chr184734052947340541+intron-Distal,intron-Proximal8.29209152.23064HepG2NOLC1
chr184734068947340762+intron-Distal5.40384400.00000K562SMNDC1
chr184734075247340758+intron-Distal3.54957400.00000HepG2PRPF4
chr184734073847340760+intron-Distal3.91770400.00000HepG2SF3A3
chr184734076347340778+intron-Distal3.73949400.00000HepG2SF3A3
chr184734064447340690+intron-Distal3.3121143.70134K562AATF
chr184734077847340812+intron-Distal4.14598400.00000HepG2SF3A3
chr184734065747340689+intron-Distal5.6511157.43741K562SMNDC1
chr184734055247340590+intron-Distal3.751888.38126K562PTBP1
chr184734078047340811+intron-Distal6.4652482.99589K562SMNDC1
chr184734072247340725+intron-Distal3.71853400.00000HepG2PRPF4
chr184734078347340810+intron-Distal4.2189473.43909HepG2SMNDC1
chr184734075947340785+intron-Distal3.9178916.04363K562ZC3H8
chr184734080447340807+intron-Distal5.00685400.00000HepG2NOLC1
chr184734399647344098+intron-Distal3.968933.77753HepG2ILF3
chr184734050547340539+intron-Distal,intron-Proximal8.85180400.00000K562SMNDC1
chr184734055347340595+intron-Distal4.578167.56947K562SF3B4
chr184734073547340741+intron-Distal4.09027400.00000HepG2DKC1
chr184734065147340685+intron-Distal4.49014400.00000HepG2GTF2F1
chr184734045947340534+intron-Distal,intron-Proximal6.3683423.57876K562ZC3H8
chr184734055147340562+intron-Distal7.40174400.00000HepG2DKC1
chr184734050547340542+intron-Distal,intron-Proximal4.32720400.00000HepG2PCBP2
chr184734055947340600+intron-Distal4.28528400.00000HepG2SF3A3
chr184734068947340694+intron-Distal4.36236400.00000HepG2DKC1
chr184734074047340758+intron-Distal4.61470400.00000HepG2NOLC1
chr184734077047340777+intron-Distal3.79234400.00000HepG2PRPF4
chr184734072547340759+intron-Distal4.3301730.95888K562ZC3H8
chr184734073047340735+intron-Distal4.03107400.00000HepG2DKC1
chr184734068747340691+intron-Distal4.89307400.00000HepG2PRPF4
chr184734052847340543+intron-Distal,intron-Proximal6.58684400.00000HepG2DKC1
chr184734074147340749+intron-Distal3.86975400.00000HepG2DKC1
chr184734070447340738+intron-Distal4.32783400.00000HepG2SF3A3
chr184734065147340688+intron-Distal4.42832400.00000HepG2SF3A3
chr184734068047340685+intron-Distal5.11422400.00000HepG2PRPF4
chr184734063947340699+intron-Distal3.54421400.00000HepG2PCBP2
chr184734076147340783+intron-Distal3.99272400.00000HepG2SMNDC1
chr184734054947340600+intron-Distal4.6288066.62562HepG2SMNDC1
chr184734070447340740+intron-Distal3.81920400.00000HepG2GTF2F1
chr184734068547340689+intron-Distal4.55615400.00000HepG2GTF2F1
chr184734072147340726+intron-Distal4.34875400.00000HepG2DKC1
chr184734069947340706+intron-Distal4.52031400.00000HepG2DKC1
chr184734069147340695+intron-Distal4.70039400.00000HepG2PRPF4
chr184734044547340538+intron-Distal,intron-Proximal3.3932253.82930K562HNRNPUL1
chr184734056847340608+intron-Distal3.7576410.68137HepG2LARP7
chr184734069547340707+intron-Distal4.54752400.00000HepG2PRPF4
chr184734050747340539+intron-Distal,intron-Proximal3.93732400.00000HepG2NCBP2
chr184734071547340721+intron-Distal4.60121400.00000HepG2DKC1
chr184734076947340800+intron-Distal4.02676400.00000HepG2DKC1
chr184734062647340653+intron-Distal4.21563400.00000HepG2PRPF4
chr184734072547340731+intron-Distal3.74861400.00000HepG2PRPF4
chr184734044247340533+intron-Distal,intron-Proximal5.1286169.60802K562GTF2F1
chr184734072647340730+intron-Distal4.24402400.00000HepG2DKC1
chr184734077747340782+intron-Distal3.4098453.97638HepG2PRPF4
chr184734064547340749+intron-Distal4.3566645.72462K562GTF2F1
chr184734070647340715+intron-Distal4.54624400.00000HepG2DKC1
chr184734074347340761+intron-Distal3.9777076.08953HepG2SMNDC1
chr184734055247340559+intron-Distal4.6293482.40500HepG2SF3A3
chr184734052147340557+intron-Distal,intron-Proximal3.1373213.78518HepG2BCCIP
chr184734073247340737+intron-Distal4.83925400.00000HepG2NOLC1
chr184734067047340697+intron-Distal4.28446400.00000HepG2SMNDC1
chr184734050547340537+intron-Distal,intron-Proximal4.70180400.00000HepG2GTF2F1
chr184734055247340594+intron-Distal5.6676052.78980K562SMNDC1
chr184734075947340769+intron-Distal3.91484400.00000HepG2DKC1
chr184734079847340804+intron-Distal5.29270400.00000HepG2NOLC1
chr184734078447340787+intron-Distal3.3508145.41028HepG2PRPF4
chr184734078547340812+intron-Distal4.866789.71105K562ZC3H8
chr184734056047340601+intron-Distal5.93325400.00000HepG2NOLC1
chr184734066047340747+intron-Distal3.3497930.74627K562PHF6
chr184734050347340537+intron-Distal,intron-Proximal5.42043400.00000HepG2SF3A3
chr184734074947340757+intron-Distal3.81234400.00000HepG2DKC1
chr184734054947340557+intron-Distal6.62812400.00000HepG2NOLC1
chr184734075547340808+intron-Distal3.0566715.30699K562AATF
chr184734065147340685+intron-Distal5.64027400.00000HepG2NOLC1
chr184734069747340743+intron-Distal4.36265400.00000HepG2SMNDC1
chr184734069947340733+intron-Distal3.27760400.00000HepG2PCBP2
chr184734076247340780+intron-Distal5.4545058.00438K562SMNDC1
chr184734076947340773+intron-Distal4.93743400.00000HepG2NOLC1
chr184734067047340689+intron-Distal4.17226400.00000HepG2DKC1
chr184734073147340734+intron-Distal3.58022400.00000HepG2PRPF4
chr184734055247340591+intron-Distal3.4931321.40935HepG2PRPF4
chr184734077347340780+intron-Distal4.81989400.00000HepG2NOLC1
chr184735370347353783+intron-Distal4.574925.60971HepG2HLTF
chr184734076447340770+intron-Distal3.2469888.08795HepG2PRPF4
chr184734053147340540+intron-Distal,intron-Proximal5.5825548.34082HepG2PTBP1
chr184734071247340732+intron-Distal5.24609400.00000HepG2NOLC1
chr184734047247340532+intron-Proximal3.5421015.55719K562ZRANB2
chr184734050347340509+intron-Proximal3.83550400.00000HepG2PTBP1
chr184734052047340528+intron-Proximal6.68782400.00000HepG2DKC1
chr184734045747340482+intron-Proximal4.75098400.00000HepG2PRPF4
chr184734045647340523+intron-Proximal3.0794222.51593K562DDX51
chr184734046947340506+intron-Proximal4.99271400.00000HepG2DKC1
chr184734044847340455+intron-Proximal7.2629028.60602K562SMNDC1
chr184734043947340503+intron-Proximal4.96181400.00000HepG2SMNDC1
chr184734048347340496+intron-Proximal3.70551400.00000HepG2PTBP1
chr184734048347340526+intron-Proximal3.21595400.00000HepG2FAM120A
chr184734043347340529+intron-Proximal4.4620762.54990K562PHF6
chr184734044047340529+intron-Proximal5.4343676.98401K562PTBP1
chr184734042947340457+intron-Proximal4.20083400.00000HepG2PRPF4
chr184734049647340503+intron-Proximal3.86238400.00000HepG2PTBP1
chr184734044247340468+intron-Proximal3.7030358.80432HepG2GTF2F1
chr184734050347340507+intron-Proximal5.65938400.00000HepG2SMNDC1
chr184734048247340490+intron-Proximal5.19530400.00000HepG2PRPF4
chr184734043347340469+intron-Proximal4.34912400.00000HepG2DKC1
chr184734051647340531+intron-Proximal4.62987400.00000HepG2PTBP1
chr184734046247340502+intron-Proximal7.75668400.00000K562SMNDC1
chr184734051847340529+intron-Proximal8.21764400.00000HepG2NOLC1
chr184734043647340525+intron-Proximal3.84428400.00000K562AATF
chr184734049047340495+intron-Proximal5.55856400.00000HepG2PRPF4
chr184734042547340439+intron-Proximal6.4987339.79669K562SMNDC1
chr184734052047340527+intron-Proximal5.3636144.89534HepG2SMNDC1
chr184734050747340520+intron-Proximal5.94201400.00000HepG2SMNDC1
chr184734051747340532+intron-Proximal6.68592400.00000HepG2PRPF4
chr184734044447340503+intron-Proximal5.07246400.00000HepG2SF3A3
chr184734046847340505+intron-Proximal4.49079400.00000HepG2GTF2F1
chr184734044147340532+intron-Proximal3.3357127.03278K562LSM11
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCARNA17 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCARNA17 is not available on ENCORE database.

  • No RBPs affect the gene expression of SCARNA17 on ENCORE database.


The Knockdown/knockout RNA-Seq assay for SCARNA17 is not available on ENCORE database.






No RBPs affect the gene expression of SCARNA17 on ENCORE database.






The Knockdown/knockout RNA-Seq assay for SCARNA17 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SCARNA17 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SCARNA17 is not avaliable on ENCORE database.