RPUSD1

General Information

Gene Name       : RPUSD1
Gene ID             : ENSG00000007376.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RPUSD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RPUSD1ENSG00000007376.70.232.741.49ENCSR000AEF
HepG2RPUSD1ENSG00000007376.716.752.019.38ENCSR985KAT
K562RPUSD1ENSG00000007376.721.734.6913.21ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RPUSD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RPUSD1 RNA is bound by 5 proteins.  







eCLIP assay for RPUSD1 is not avaliable on ENCORE database.





5 proteins are bound to RPUSD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr16836384836437-3'-UTR,intron-Distal3.435623.33980HepG2SF3B4
chr16836785836835-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.386705.34978HepG2PRPF8
chr16837521837584-5'-UTR,CDS,intron-Distal,intron-Proximal4.422734.45914HepG2PRPF8
chr16838294838358-5'-UTR,intron-Distal,intron-Proximal4.263673.47325K562DDX3X
chr16837483837537-intron-Distal,intron-Proximal3.197023.59805HepG2SF3B4
chr16836946837033-intron-Distal,intron-Proximal4.126264.10323HepG2PRPF4
chr16838207838250-intron-Distal4.757134.35676HepG2PRPF8
chr16838167838232-intron-Distal5.315406.41139HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RPUSD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RPUSD1 is not available on ENCORE database.

  • 103 RBPs can affect the levels of RPUSD1.  








The Knockdown/knockout RNA-Seq assay for RPUSD1 is not available on ENCORE database.





103 RBPs can affect the gene expression of RPUSD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RPUSD1ENSG00000007376.3356.74490188.641200.919102.257401.77250HepG2AKAP1
RPUSD1ENSG00000007376.3267.03330114.486401.221702.192001.36090HepG2BCCIP
RPUSD1ENSG00000007376.3231.14460156.525400.562302.369501.81050HepG2BOP1
RPUSD1ENSG00000007376.376.35260122.36940-0.680502.016301.35110HepG2CALR
RPUSD1ENSG00000007376.3327.35620230.759800.504403.416402.69150HepG2CKAP4
RPUSD1ENSG00000007376.392.76380143.69370-0.631402.000701.40520HepG2CPSF6
RPUSD1ENSG00000007376.395.4257053.814200.826302.585801.60430HepG2YBX3
RPUSD1ENSG00000007376.3154.9891080.121100.951804.322103.55140HepG2CELF1
RPUSD1ENSG00000007376.3327.14270213.458800.615905.101104.01620HepG2DDX19B
RPUSD1ENSG00000007376.3306.74850180.647200.763802.126801.57120HepG2DDX3X
RPUSD1ENSG00000007376.3102.0273052.846800.949002.638501.94810HepG2DNAJC21
RPUSD1ENSG00000007376.3165.1051052.372501.6564012.7953011.50170HepG2DNAJC2
RPUSD1ENSG00000007376.3245.83010149.173900.720602.116301.59010HepG2EIF2S1
RPUSD1ENSG00000007376.3262.13830164.790500.669601.885201.35340HepG2EIF4A3
RPUSD1ENSG00000007376.3150.4291081.403700.885804.109703.12810HepG2EIF4G2
RPUSD1ENSG00000007376.3426.29180225.541100.918408.694807.22900HepG2EWSR1
RPUSD1ENSG00000007376.398.35970191.42580-0.960604.825603.80250HepG2FUBP3
RPUSD1ENSG00000007376.3304.46200166.460800.871002.978202.25920HepG2FXR1
RPUSD1ENSG00000007376.3109.3134045.930601.250803.460001.91620HepG2HNRNPA0
RPUSD1ENSG00000007376.3180.3591078.417201.201508.793107.65670HepG2HNRNPL
RPUSD1ENSG00000007376.392.34050155.43480-0.751302.663702.04420HepG2HNRNPLL
RPUSD1ENSG00000007376.3289.17470201.037400.524402.458501.55990HepG2HNRNPM
RPUSD1ENSG00000007376.3145.3050058.950601.301407.565506.60150HepG2HNRNPU
RPUSD1ENSG00000007376.3259.11110156.821200.724402.453401.81310HepG2IGF2BP2
RPUSD1ENSG00000007376.3128.8339060.216601.097205.763604.74010HepG2ILF2
RPUSD1ENSG00000007376.3447.73580195.558001.195003.761002.79040HepG2LARP4
RPUSD1ENSG00000007376.3157.4894064.433101.289303.198201.97850HepG2LARP7
RPUSD1ENSG00000007376.3343.67620166.519801.045304.710803.86170HepG2MAGOH
RPUSD1ENSG00000007376.3330.61260167.420200.981604.739103.93100HepG2MATR3
RPUSD1ENSG00000007376.386.38740158.55430-0.876102.539501.61470HepG2MTPAP
RPUSD1ENSG00000007376.3123.17590198.02190-0.684903.363202.01930HepG2NAA15
RPUSD1ENSG00000007376.3344.67020171.338201.008304.280003.49840HepG2NCBP2
RPUSD1ENSG00000007376.3223.01400112.007400.993404.818802.93540HepG2NKRF
RPUSD1ENSG00000007376.3247.8625085.380601.537504.964203.94730HepG2NOL12
RPUSD1ENSG00000007376.3272.20390103.489001.395104.770803.31310HepG2NONO
RPUSD1ENSG00000007376.3280.34180167.730400.740905.176004.38740HepG2PCBP1
RPUSD1ENSG00000007376.3152.4936052.579701.536109.951908.60170HepG2PPIL4
RPUSD1ENSG00000007376.395.49120165.26660-0.791403.928703.02200HepG2PRPF4
RPUSD1ENSG00000007376.3245.86780170.668300.526602.409101.89270HepG2PTBP1
RPUSD1ENSG00000007376.3219.6045081.516701.4296011.3850010.28610HepG2PUF60
RPUSD1ENSG00000007376.3423.5542086.549302.2909048.7281046.86850HepG2PUM1
RPUSD1ENSG00000007376.3226.0294086.476301.386007.784006.68470HepG2PUM2
RPUSD1ENSG00000007376.3485.04950292.694300.728606.626705.90790HepG2RBM22
RPUSD1ENSG00000007376.3279.4610077.709601.846408.064306.36310HepG2RBM27
RPUSD1ENSG00000007376.3170.0115063.105001.429703.150702.01700HepG2RCC2
RPUSD1ENSG00000007376.3318.95330189.940500.747705.111904.41310HepG2NELFE
RPUSD1ENSG00000007376.3261.6076086.508001.596406.381505.48940HepG2RPS19
RPUSD1ENSG00000007376.3235.0150071.644901.713707.983306.67020HepG2RPS2
RPUSD1ENSG00000007376.3144.5055054.511601.406403.621602.70670HepG2RPS3A
RPUSD1ENSG00000007376.3182.1078073.159701.315603.358802.17130HepG2RPS5
RPUSD1ENSG00000007376.3159.4404052.499601.602503.558002.84360HepG2SAFB2
RPUSD1ENSG00000007376.3443.59540231.955100.935303.570902.80160HepG2SF3A3
RPUSD1ENSG00000007376.3320.74940177.694400.851906.493105.64950HepG2SF3B4
RPUSD1ENSG00000007376.3180.8224078.194001.209306.558305.55230HepG2SLBP
RPUSD1ENSG00000007376.3139.0709061.226001.183506.089005.19350HepG2SMN1
RPUSD1ENSG00000007376.3192.2726065.562501.552103.752102.62350HepG2SMNDC1
RPUSD1ENSG00000007376.393.87830171.17860-0.866602.974802.16330HepG2SNRNP70
RPUSD1ENSG00000007376.3132.88730185.47170-0.481001.700201.30380HepG2SRSF1
RPUSD1ENSG00000007376.3242.0583080.504701.5881014.3274013.05960HepG2SRSF5
RPUSD1ENSG00000007376.389.15980150.88880-0.759003.445502.84390HepG2SRSF9
RPUSD1ENSG00000007376.398.1818047.465301.048502.767001.66650HepG2STIP1
RPUSD1ENSG00000007376.3292.1677091.539901.6742021.0695019.60760HepG2SUCLG1
RPUSD1ENSG00000007376.339.02970166.70170-2.0946015.2263014.06800HepG2TAF15
RPUSD1ENSG00000007376.3184.5600075.078801.297502.425201.48450HepG2TFIP11
RPUSD1ENSG00000007376.3115.5126057.291101.011602.378001.90810HepG2TIAL1
RPUSD1ENSG00000007376.3187.1974057.793001.6955013.9671012.83780HepG2TRIM56
RPUSD1ENSG00000007376.3263.4322079.664001.725303.631002.61540HepG2TUFM
RPUSD1ENSG00000007376.3306.7042084.340001.862507.540406.13320HepG2UBE2L3
RPUSD1ENSG00000007376.3174.6639066.165001.400303.383302.54780HepG2UCHL5
RPUSD1ENSG00000007376.3352.03480198.603600.825707.353806.45460HepG2UTP3
RPUSD1ENSG00000007376.3768.19650487.872800.654906.677004.64760K562APOBEC3C
RPUSD1ENSG00000007376.385.57290138.14940-0.691002.150601.38770K562BOP1
RPUSD1ENSG00000007376.3287.92610200.998000.518402.652401.62830K562CCAR1
RPUSD1ENSG00000007376.3393.89080679.74780-0.787208.669306.98340K562CELF1
RPUSD1ENSG00000007376.31032.00420396.946701.3783038.5079036.35810K562DDX47
RPUSD1ENSG00000007376.3272.51690134.288601.020903.125401.31560K562DDX51
RPUSD1ENSG00000007376.3259.83790124.152601.065402.537401.66630K562EFTUD2
RPUSD1ENSG00000007376.3502.01930204.442901.295909.305607.43230K562EIF3A
RPUSD1ENSG00000007376.3168.8567043.785701.9472013.6341011.83150K562EIF3G
RPUSD1ENSG00000007376.3741.53660552.892000.423402.334801.46720K562EIF4G2
RPUSD1ENSG00000007376.348.49020162.01010-1.740303.607702.29460K562FKBP4
RPUSD1ENSG00000007376.3525.24530126.095002.058407.799306.85090K562FXR1
RPUSD1ENSG00000007376.30.000009.92750-99999.999992.834202.11580K562G3BP2
RPUSD1ENSG00000007376.3333.66610452.91690-0.440803.014101.82290K562GLRX3
RPUSD1ENSG00000007376.379.37070154.78670-0.963602.641301.45970K562HNRNPA2B1
RPUSD1ENSG00000007376.389.69940144.58450-0.688702.568601.77700K562KIF1C
RPUSD1ENSG00000007376.355.03540119.75580-1.121703.654702.56450K562KRR1
RPUSD1ENSG00000007376.3182.7914043.977502.0553016.9919014.76900K562MAGOH
RPUSD1ENSG00000007376.3138.9895043.877301.663305.472704.11430K562MATR3
RPUSD1ENSG00000007376.353.09520113.52540-1.096402.389001.58230K562NAA15
RPUSD1ENSG00000007376.3318.39200122.629901.376403.510202.01500K562NONO
RPUSD1ENSG00000007376.3395.79240529.05130-0.418703.272002.46600K562NSUN2
RPUSD1ENSG00000007376.3649.84740379.089300.777505.483204.26520K562PPIG
RPUSD1ENSG00000007376.3336.50550120.817901.477704.131803.21530K562PRPF8
RPUSD1ENSG00000007376.3254.7573042.732302.5756031.0531028.90940K562PTBP1
RPUSD1ENSG00000007376.370.39950135.14000-0.940803.380002.78850K562PUS1
RPUSD1ENSG00000007376.3159.2798040.935701.9600012.9091010.90070K562RBM22
RPUSD1ENSG00000007376.393.1382039.934701.221604.228302.38420K562RBM34
RPUSD1ENSG00000007376.3129.6001043.087501.588602.915101.78850K562NELFE
RPUSD1ENSG00000007376.3446.12380122.977901.858907.979306.57800K562RPS19
RPUSD1ENSG00000007376.3111.7093020.172102.469205.145203.72040K562RPS3
RPUSD1ENSG00000007376.3539.53880237.499301.183703.843502.55890K562SAFB
RPUSD1ENSG00000007376.3385.71250522.09580-0.436802.049101.33990K562SF3A3
RPUSD1ENSG00000007376.339.6436010.338901.938904.208203.14800K562SF3B4
RPUSD1ENSG00000007376.355.71560142.26070-1.352404.204102.58240K562SNRNP200
RPUSD1ENSG00000007376.3417.61400534.90360-0.357102.654701.73480K562SRPK2
RPUSD1ENSG00000007376.3195.8268041.900002.2245013.5124011.95140K562SRSF1
RPUSD1ENSG00000007376.382.5491019.472602.083704.302102.94340K562SRSF4
RPUSD1ENSG00000007376.337.83240174.59960-2.206406.218203.15100K562SUGP2
RPUSD1ENSG00000007376.350.24500170.21040-1.760306.738004.21090K562SUPT6H
RPUSD1ENSG00000007376.3442.98090267.302300.728705.251504.11100K562SYNCRIP
RPUSD1ENSG00000007376.3264.4714042.388002.6413029.6393026.80180K562TARDBP
RPUSD1ENSG00000007376.3115.8646040.892601.502406.976505.58320K562TIA1
RPUSD1ENSG00000007376.3263.58660479.99710-0.864708.602507.02250K562WDR3
RPUSD1ENSG00000007376.3397.45050499.17540-0.328802.292901.51590K562WDR43
RPUSD1ENSG00000007376.360.21480145.03990-1.268303.983101.86900K562XPO5
RPUSD1ENSG00000007376.3305.51910126.104801.276505.787703.82190K562XRN2
RPUSD1ENSG00000007376.343.85110167.46600-1.933207.580704.42660K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RPUSD1 is not available on ENCORE database.





1 RBPs can affect the splicing of RPUSD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSRPUSD1ENSG00000007376.3chr16-8370768372418370768371798373538374690.251000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RPUSD1 is not avaliable on ENCORE database.