SOX9

General Information

Gene Name       : SOX9
Gene ID             : ENSG00000125398.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SOX9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SOX9ENSG00000125398.64.544.444.49ENCSR000AEF
HepG2SOX9ENSG00000125398.651.9843.4947.73ENCSR985KAT
K562SOX9ENSG00000125398.60.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SOX9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SOX9 RNA is bound by 27 proteins.  







eCLIP assay for SOX9 is not avaliable on ENCORE database.





27 proteins are bound to SOX9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177012183770121847+3'-UTR5.852638.16476HepG2TIA1
chr177012188470121940+3'-UTR4.278556.57879HepG2TIA1
chr177012195170122016+3'-UTR3.486959.07553HepG2TIAL1
chr177012118970121238+3'-UTR3.4011713.11083HepG2FUBP3
chr177012149270121618+3'-UTR3.302727.13688HepG2UPF1
chr177012172870121773+3'-UTR5.020487.96388HepG2TIA1
chr177012066470120717+3'-UTR4.676434.25353HepG2TIA1
chr177012241170122482+3'-UTR3.690354.23679HepG2TIA1
chr177012183570121847+3'-UTR4.7536013.71259HepG2TIAL1
chr177012184770121878+3'-UTR4.0896413.65999HepG2TIAL1
chr177012098470121009+3'-UTR4.455365.66020HepG2TIAL1
chr177012211170122159+3'-UTR3.174414.02618HepG2IGF2BP3
chr177012105270121105+3'-UTR3.1124116.55912HepG2FUBP3
chr177012066770120735+3'-UTR4.6635314.05780HepG2RBM15
chr177012194470121970+3'-UTR3.2269311.59191HepG2FUBP3
chr177012105270121092+3'-UTR3.450003.65873HepG2TIA1
chr177012134470121457+3'-UTR3.276137.50773HepG2UPF1
chr177012097370121031+3'-UTR4.7588030.69167HepG2FUBP3
chr177012172170121767+3'-UTR3.064205.95169HepG2TIAL1
chr177012187870121936+3'-UTR3.394809.26824HepG2TIAL1
chr177012184770121884+3'-UTR6.3578712.74791HepG2TIA1
chr177012105070121098+3'-UTR3.359038.17744HepG2TIAL1
chr177011742170117533+5'-UTR3.4897940.06202HepG2DDX3X
chr177011736470117421+5'-UTR3.6730338.68258HepG2DDX3X
chr177011736270117392+5'-UTR3.6580719.32750HepG2DDX6
chr177011729370117355+5'-UTR3.4737521.04604HepG2DDX3X
chr177011741870117486+5'-UTR3.7397225.71990HepG2RPS3
chr177011728670117348+5'-UTR3.3800122.02245HepG2RBM15
chr177011729170117362+5'-UTR3.5380024.69465HepG2DDX6
chr177011724770117277+5'-UTR5.570429.08388HepG2RBM15
chr177011729370117366+5'-UTR3.1740819.13611HepG2RPS3
chr177011739270117444+5'-UTR3.6914723.61151HepG2DDX6
chr177011745070117470+5'-UTR3.111666.69797HepG2RBM15
chr177012025970120334+CDS4.4768112.05937HepG2IGF2BP3
chr177011882170118867+CDS,intron-Proximal3.739427.07978HepG2RBM15
chr177011795170117966+CDS,intron-Proximal4.4798646.73807HepG2AQR
chr177012045470120508+CDS3.3328420.37887HepG2IGF2BP1
chr177012034270120402+CDS3.4691023.36399HepG2IGF2BP1
chr177011761170117660+CDS3.5239215.03648HepG2RPS3
chr177011786870117902+CDS4.241557.73437HepG2RPS3
chr177011793470117995+CDS,intron-Proximal3.6623661.80242HepG2PRPF8
chr177011895570119037+CDS3.1281212.23854HepG2RPS3
chr177011788970117904+CDS4.545155.50717HepG2G3BP1
chr177011986370119929+CDS3.7740721.29240HepG2GRWD1
chr177011886170118927+CDS3.3769911.04767HepG2GRWD1
chr177011885870118881+CDS,intron-Proximal3.6583434.29651HepG2AQR
chr177012024570120343+CDS3.8317133.33184HepG2PCBP2
chr177012033470120405+CDS5.4200412.75652HepG2IGF2BP3
chr177012020370120251+CDS3.1952112.17522HepG2IGF2BP1
chr177011879570118870+CDS,intron-Proximal3.5910326.63425HepG2BUD13
chr177011911070119118+CDS,intron-Proximal3.9155745.13932HepG2PRPF8
chr177012020570120251+CDS3.371885.13933HepG2IGF2BP3
chr177012025170120339+CDS4.1355249.65292HepG2IGF2BP1
chr177011778870117825+CDS4.525078.77766HepG2RPS3
chr177011980870119863+CDS3.5065113.68767HepG2GRWD1
chr177012040570120508+CDS3.244899.51242HepG2IGF2BP3
chr177011964570119715+CDS,intron-Proximal3.6439717.78373HepG2AQR
chr177011881770118862+CDS,intron-Proximal3.4103114.31814HepG2PRPF8
chr177011772570117805+CDS3.710629.19796HepG2ZNF800
chr177011893370118981+CDS3.2300318.77830HepG2AQR
chr177011796170118029+CDS,intron-Proximal3.3034213.04066HepG2PRPF4
chr177011892770119002+CDS3.1285210.99762HepG2GRWD1
chr177011772770117819+CDS3.2150414.41043HepG2GRWD1
chr177011863070118666+intron-Distal4.7447611.54913HepG2FAM120A
chr177011849270118565+intron-Distal5.3800423.06182HepG2PRPF4
chr177011875570118791+intron-Distal,intron-Proximal3.203014.65333HepG2RBM15
chr177011820470118239+intron-Distal3.756466.09392HepG2RBM15
chr177011852170118579+intron-Distal4.979279.36623HepG2PCBP2
chr177011822270118278+intron-Distal4.2482015.41543HepG2PRPF4
chr177011846670118473+intron-Distal3.180534.46248HepG2FAM120A
chr177011822670118322+intron-Distal3.1583315.88928HepG2CSTF2T
chr177011827670118326+intron-Distal4.416378.60474HepG2GTF2F1
chr177011809670118136+intron-Distal3.222616.00630HepG2GTF2F1
chr177011809170118124+intron-Distal3.605487.46919HepG2FAM120A
chr177011816670118280+intron-Distal3.5516810.90616HepG2FASTKD2
chr177011827870118317+intron-Distal4.106838.63083HepG2PRPF4
chr177011852970118593+intron-Distal3.204137.11670HepG2CSTF2T
chr177011823070118284+intron-Distal4.1479816.65864HepG2FAM120A
chr177011839470118476+intron-Distal4.4868616.75576HepG2PRPF4
chr177011816170118270+intron-Distal4.7781325.88606HepG2GTF2F1
chr177011851770118585+intron-Distal3.6060618.52596HepG2FAM120A
chr177011810670118166+intron-Distal4.9824929.97417HepG2PRPF4
chr177011818770118215+intron-Distal4.8230821.58851HepG2PRPF4
chr177011873270118800+intron-Distal,intron-Proximal4.7435421.28444HepG2AQR
chr177011921270119306+intron-Distal,intron-Proximal3.105076.90921HepG2HNRNPK
chr177011813570118270+intron-Distal3.5440527.35910HepG2BUD13
chr177011851870118583+intron-Distal3.9018012.35493HepG2GTF2F1
chr177011844370118493+intron-Distal5.6533413.67157HepG2GTF2F1
chr177011815270118230+intron-Distal3.9249133.12234HepG2FAM120A
chr177011863470118669+intron-Distal5.237149.57755HepG2GTF2F1
chr177011816670118187+intron-Distal6.1152938.39517HepG2PRPF4
chr177011814070118226+intron-Distal3.7078321.29008HepG2CSTF2T
chr177011817770118257+intron-Distal3.329755.60181HepG2SF3B4
chr177011807870118124+intron-Distal3.067774.51156HepG2CSTF2T
chr177011802570118073+intron-Distal,intron-Proximal3.596449.57582HepG2XPO5
chr177011799270118032+intron-Proximal3.467165.88293HepG2XRN2
chr177011880270118822+intron-Proximal4.7894516.79893HepG2AQR
chr177011960370119645+intron-Proximal5.5027910.68826HepG2AQR
chr177011796770118023+intron-Proximal3.876954.75307HepG2FASTKD2
chr177011882470118856+intron-Proximal3.518405.08364HepG2PRPF4
chr177011799570118034+intron-Proximal3.3963646.12312HepG2PRPF8
chr177011796670118031+intron-Proximal3.665165.15936HepG2SUPV3L1
chr177011796370118038+intron-Proximal3.3961116.06378HepG2BUD13
chr177011798370118032+intron-Proximal3.446726.66573HepG2GTF2F1
chr177011797170118012+intron-Proximal3.639984.25269HepG2ZNF800
chr177011798170118041+intron-Proximal3.037695.07231HepG2SF3B4
chr177011882270118858+intron-Proximal4.5602841.75776HepG2AQR
chr177011796470117992+intron-Proximal4.303265.28966HepG2XRN2
chr177011800370118026+intron-Proximal5.0768614.52207HepG2AQR
chr177011796870118029+intron-Proximal3.4241914.70377HepG2FAM120A
chr177011911870119157+intron-Proximal4.2623257.68508HepG2PRPF8
chr177011876370118795+intron-Proximal3.5182610.70520HepG2BUD13
chr177011911970119153+intron-Proximal5.6192836.14871HepG2AQR
chr177011911370119119+intron-Proximal5.5057532.52768HepG2AQR
chr177011796670118003+intron-Proximal5.1925662.27839HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SOX9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SOX9 is not available on ENCORE database.

  • 86 RBPs can affect the levels of SOX9.  








The Knockdown/knockout RNA-Seq assay for SOX9 is not available on ENCORE database.





86 RBPs can affect the gene expression of SOX9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SOX9ENSG00000125398.56844.414808792.67090-0.361403.227102.20850HepG2ABCF1
SOX9ENSG00000125398.56666.207105737.913500.216203.818003.12480HepG2ACO1
SOX9ENSG00000125398.53596.232004677.48950-0.379202.759202.22830HepG2AKAP1
SOX9ENSG00000125398.54409.500506167.86130-0.4842013.1148011.81620HepG2AUH
SOX9ENSG00000125398.52610.852803580.75490-0.455703.876002.76560HepG2BCCIP
SOX9ENSG00000125398.55452.238808795.90290-0.6900012.8250011.66220HepG2BOP1
SOX9ENSG00000125398.59528.569706587.663000.532408.946606.86720HepG2BUD13
SOX9ENSG00000125398.55477.189506927.75610-0.339004.550403.59200HepG2CALR
SOX9ENSG00000125398.56208.0670010823.02560-0.801909.493007.69410HepG2CCAR1
SOX9ENSG00000125398.54667.989503676.822500.344202.222601.52520HepG2CIRBP
SOX9ENSG00000125398.51552.423104116.17820-1.4068018.3336016.42060HepG2CNOT7
SOX9ENSG00000125398.55445.747908075.14860-0.568407.926206.81210HepG2CPSF6
SOX9ENSG00000125398.510794.442207240.954700.5759010.844908.83150HepG2CPSF7
SOX9ENSG00000125398.54794.698706400.01580-0.4166014.7965013.31890HepG2DAZAP1
SOX9ENSG00000125398.52672.513103967.12960-0.569908.566707.44270HepG2DDX21
SOX9ENSG00000125398.52544.035003294.04770-0.372702.723501.44350HepG2DDX27
SOX9ENSG00000125398.52296.776104480.12550-0.9639010.984909.81530HepG2DDX3X
SOX9ENSG00000125398.55011.659407053.43220-0.493006.116004.67000HepG2DDX5
SOX9ENSG00000125398.56424.751703849.828800.738709.189708.13390HepG2DDX6
SOX9ENSG00000125398.53276.171904270.75720-0.382504.244703.04090HepG2DHX30
SOX9ENSG00000125398.52454.026204427.91270-0.8515029.2541027.24740HepG2DNAJC21
SOX9ENSG00000125398.58248.762106669.985300.306403.766002.40250HepG2EIF2S2
SOX9ENSG00000125398.54867.085503939.903100.304802.141801.33760HepG2EIF3D
SOX9ENSG00000125398.56431.710303981.346900.691806.474605.45390HepG2EIF4B
SOX9ENSG00000125398.54143.918306048.02070-0.545507.737806.40570HepG2EIF4G2
SOX9ENSG00000125398.53082.534103780.95450-0.294602.865001.70130HepG2FASTKD2
SOX9ENSG00000125398.56110.476404126.424300.566306.833605.77770HepG2FXR1
SOX9ENSG00000125398.53063.240203826.86370-0.321102.263601.65820HepG2G3BP1
SOX9ENSG00000125398.53195.510804137.42310-0.372702.837901.80460HepG2GNB2L1
SOX9ENSG00000125398.57540.548809153.89360-0.279701.943401.40070HepG2GPKOW
SOX9ENSG00000125398.55470.405804470.335100.291202.842302.18730HepG2HNRNPA1
SOX9ENSG00000125398.57475.677505881.513500.345906.811705.45780HepG2HNRNPA2B1
SOX9ENSG00000125398.52966.814404972.47610-0.7450014.2469012.79240HepG2HNRNPC
SOX9ENSG00000125398.52310.593103565.33270-0.625805.227303.14150HepG2HNRNPD
SOX9ENSG00000125398.54904.485003877.380600.338902.453401.79340HepG2HNRNPK
SOX9ENSG00000125398.57297.892908735.72170-0.259401.984301.44260HepG2HNRNPLL
SOX9ENSG00000125398.53770.175804939.59710-0.389808.884907.84600HepG2HNRNPU
SOX9ENSG00000125398.52983.699403889.56770-0.382502.931302.23980HepG2IGF2BP2
SOX9ENSG00000125398.52666.868004012.59760-0.589404.462102.75990HepG2ILF3
SOX9ENSG00000125398.55231.498203912.905600.418902.825401.81300HepG2KHSRP
SOX9ENSG00000125398.53159.047204127.87340-0.385902.571601.93770HepG2MAGOH
SOX9ENSG00000125398.54354.898107185.64570-0.7225016.2144014.44340HepG2MSI2
SOX9ENSG00000125398.57501.721906033.817900.314103.351002.01090HepG2NAA15
SOX9ENSG00000125398.55520.822904248.187500.377903.067702.40270HepG2NCBP2
SOX9ENSG00000125398.54473.169306030.86780-0.431102.795001.35680HepG2NKRF
SOX9ENSG00000125398.53016.891303782.13330-0.326102.367401.69500HepG2PABPC4
SOX9ENSG00000125398.55706.092103741.475700.6088021.2018019.77810HepG2PCBP1
SOX9ENSG00000125398.55791.944704405.716300.394605.152404.17440HepG2PPIL4
SOX9ENSG00000125398.54151.133004879.70260-0.233303.409102.55950HepG2PRPF4
SOX9ENSG00000125398.55420.701303807.294900.5096014.6788013.61280HepG2PTBP1
SOX9ENSG00000125398.52881.756406057.85010-1.0719031.9004030.16410HepG2PUF60
SOX9ENSG00000125398.54171.024206425.90560-0.6235014.8568013.38060HepG2PUM2
SOX9ENSG00000125398.54657.175105918.88960-0.345906.255005.55180HepG2RBM22
SOX9ENSG00000125398.56763.936403742.015700.8539016.4565014.89480HepG2RBM25
SOX9ENSG00000125398.53627.076204886.74560-0.430103.999102.79190HepG2RBM27
SOX9ENSG00000125398.55015.371804236.984600.243203.730803.12060HepG2NELFE
SOX9ENSG00000125398.56358.049903946.482000.6879027.7643026.17270HepG2RECQL
SOX9ENSG00000125398.53663.047804700.41660-0.359703.826203.04290HepG2RPLP0
SOX9ENSG00000125398.53679.328504891.20210-0.410702.304101.44060HepG2RPS10
SOX9ENSG00000125398.53383.094104507.11030-0.413903.488702.59060HepG2RPS2
SOX9ENSG00000125398.53868.114204398.89730-0.185502.761602.11750HepG2SAFB2
SOX9ENSG00000125398.52579.435403847.58210-0.576907.591306.05670HepG2SERBP1
SOX9ENSG00000125398.55807.523003963.520600.5510015.1516013.93550HepG2SF3B4
SOX9ENSG00000125398.56901.543205808.140000.248705.334204.41360HepG2SLBP
SOX9ENSG00000125398.54759.543806685.14400-0.4901017.4257016.45300HepG2SRFBP1
SOX9ENSG00000125398.53550.895404137.20630-0.220502.807802.33180HepG2SRSF1
SOX9ENSG00000125398.54934.298003365.965900.5517018.3933017.19940HepG2SRSF9
SOX9ENSG00000125398.54445.550805804.24580-0.384709.528408.68790HepG2SSB
SOX9ENSG00000125398.54207.106705930.22080-0.495303.522602.13600HepG2STAU1
SOX9ENSG00000125398.55273.223406802.25820-0.3673010.541209.45900HepG2SUCLG1
SOX9ENSG00000125398.51571.387303504.69980-1.1573021.6190020.04950HepG2SUPV3L1
SOX9ENSG00000125398.52993.135502349.026900.349502.704101.71790HepG2TFIP11
SOX9ENSG00000125398.52063.604204799.53570-1.2177046.7589045.16570HepG2TIAL1
SOX9ENSG00000125398.56185.948604842.661000.353107.967807.08870HepG2TRIM56
SOX9ENSG00000125398.55508.027407224.27460-0.3913010.681409.47120HepG2UPF1
SOX9ENSG00000125398.54737.649606974.75440-0.5580018.2429016.90970HepG2UTP3
SOX9ENSG00000125398.52711.134503701.04400-0.449002.940301.80430HepG2XPO5
SOX9ENSG00000125398.52851.308704815.57630-0.7561037.3530035.44870HepG2ZC3H8
SOX9ENSG00000125398.59783.482707945.320200.300109.310008.45800HepG2ZNF622
SOX9ENSG00000125398.52.4873029.96450-3.590605.616904.49020K562MTPAP
SOX9ENSG00000125398.53.5634033.29160-3.223805.725104.70610K562NSUN2
SOX9ENSG00000125398.50.0000030.71690-99999.999999.478706.71510K562NUFIP2
SOX9ENSG00000125398.50.0000032.85270-99999.9999910.583009.06080K562SF3A3
SOX9ENSG00000125398.50.4866033.65850-6.112209.600507.97050K562SRPK2
SOX9ENSG00000125398.50.3903035.29990-6.4989010.618709.32520K562UPF1
SOX9ENSG00000125398.50.0000030.20480-99999.999999.505807.84210K562WDR3
SOX9ENSG00000125398.50.0000031.41090-99999.9999910.371508.85300K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SOX9 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SOX9 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SOX9 is not avaliable on ENCORE database.