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PRPF4
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-69
BG293LV06-70
idx
0
0
TRCN#_or_BGC#
TRCN0000074772
TRCN0000074772
shRNA_or_gRNA_sequence
CCGGGCAAAGTGATGGGCCTAGATACTCGAGTATCTAGGCCCATCACTTTGCTTTTTG
CCGGGCAAAGTGATGGGCCTAGATACTCGAGTATCTAGGCCCATCACTTTGCTTTTTG
PAM
Name
PRPF4
PRPF4
Sample_ID
BG293LV06-69
BG293LV06-70
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
PRPF4
PRPF4
qPCR_result
69.1
65.6
Ave_qPCR
67.3
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10156
10157
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-69
BG293LV06-70
Sample_ID
BG293LV06-69
BG293LV06-70
Sample Name
Sample Name
PRPF4-BG293LV06-69B
PRPF4-BG293LV06-70B
RBP
PRPF4
PRPF4
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13506
13507
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-69
BG293LV06-70
Sample #
71
72
Sample Name
PRPF4-BG293LV06-69B
PRPF4-BG293LV06-70B
Sample_Name_Alias
Index Well Position
G02
H02
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-10-02
2024-10-02
Lib_ID
Lib-241002
Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp
276
285
Peak_Molarity
74.00
59.10
libSampleQC_DNA_Well
DNA_Library_set72/set1/H2.png
DNA_Library_set72/set1/G2.png
RIN
9.9
9.9
libSample_RNA_Well
RNA_Library_set72/set1/G2.png
RNA_Library_set72/set1/H2.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-10-04
2024-10-04
Sample_ID
BG293LV06-69
BG293LV06-70
RBP
PRPF4
PRPF4
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
B
B
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4496
4497
Sequencing Information
BG293LV06-69
BG293LV06-70
Sample_ID
BG293LV06-69
BG293LV06-70
Sample Name
PRPF4-BG293LV06-69B
PRPF4-BG293LV06-70B
Pool ID
Pool-241004
Pool-241004
LocalServer_folder
set72
set72
total_reads
31,623,135
36,165,736
total_aligned_reads
29,154,667
33,553,012
unique_aligned_reads
26,959,335
31,438,889
percent_uniqueAligned
0.85252
0.86930
correlation_replicates
0.925375
0.925375
spikein_reads
99,726
176,342
percent_spikeins
0.00315
0.00488
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3065
3066
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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