PRPF4      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-69BG293LV06-70
idx00
TRCN#_or_BGC#TRCN0000074772TRCN0000074772
shRNA_or_gRNA_sequenceCCGGGCAAAGTGATGGGCCTAGATACTCGAGTATCTAGGCCCATCACTTTGCTTTTTGCCGGGCAAAGTGATGGGCCTAGATACTCGAGTATCTAGGCCCATCACTTTGCTTTTTG
PAM
NamePRPF4PRPF4
Sample_IDBG293LV06-69BG293LV06-70
transduction_Date9/5/249/5/24
daysD4D4
RBP_namePRPF4PRPF4
qPCR_result69.165.6
Ave_qPCR67.3
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1015610157




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-69BG293LV06-70
Sample_IDBG293LV06-69BG293LV06-70
Sample Name
Sample NamePRPF4-BG293LV06-69BPRPF4-BG293LV06-70B
RBPPRPF4PRPF4
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1350613507




Library-Prep Information
BG293LV06-69BG293LV06-70
Sample #7172
Sample NamePRPF4-BG293LV06-69BPRPF4-BG293LV06-70B
Sample_Name_Alias
Index Well PositionG02H02
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp276285
Peak_Molarity74.0059.10
libSampleQC_DNA_WellDNA_Library_set72/set1/H2.pngDNA_Library_set72/set1/G2.png
RIN9.99.9
libSample_RNA_WellRNA_Library_set72/set1/G2.pngRNA_Library_set72/set1/H2.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-69BG293LV06-70
RBPPRPF4PRPF4
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44964497




Sequencing Information
BG293LV06-69BG293LV06-70
Sample_IDBG293LV06-69BG293LV06-70
Sample NamePRPF4-BG293LV06-69BPRPF4-BG293LV06-70B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads31,623,13536,165,736
total_aligned_reads29,154,66733,553,012
unique_aligned_reads26,959,33531,438,889
percent_uniqueAligned0.852520.86930
correlation_replicates0.9253750.925375
spikein_reads99,726176,342
percent_spikeins0.003150.00488
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30653066




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database