RNF31

General Information

Gene Name       : RNF31
Gene ID             : ENSG00000092098.16
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RNF31)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF31ENSG00000092098.1618.8332.0625.45ENCSR000AEF
HepG2RNF31ENSG00000092098.16119.4172.4595.93ENCSR985KAT
K562RNF31ENSG00000092098.1627.3616.3721.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
RNF31Ribo-STAMP-293TshRNABGRSLV05-11,BGRSLV05-12BGRSLV05-1,BGRSLV05-2NotSatisfiedENCORE2
RNF31Ribo-STAMP-293TshRNARNF31-BGRSLV07-21,RNF31-BGRSLV07-22NT-BGRSLV07-1,NT-BGRSLV07-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF31 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF31 RNA is bound by 27 proteins.  







eCLIP assay for RNF31 is not avaliable on ENCORE database.





27 proteins are bound to RNF31 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr142461878624618801+3'-UTR,CDS,intron-Distal,intron-Proximal3.943697.85990HepG2PRPF8
chr142462702924627113+3'-UTR,CDS,intron-Distal,intron-Proximal3.5113110.85511HepG2SF3A3
chr142461947124619527+3'-UTR,CDS,intron-Distal4.378178.83909HepG2EFTUD2
chr142462737524627470+3'-UTR,CDS,intron-Proximal5.5816432.74187HepG2PRPF8
chr142462958824629616+3'-UTR,CDS4.506473.99014HepG2PABPN1
chr142462909924629169+3'-UTR,CDS,intron-Distal3.8722915.00826HepG2PPIG
chr142462462224624637+3'-UTR,CDS,intron-Proximal3.067875.08732HepG2PPIG
chr142461746224617483+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.2205310.21736HepG2PRPF8
chr142462487324624900+3'-UTR,CDS3.7932210.14528HepG2PPIG
chr142461752424617557+3'-UTR,5'-UTR,CDS,intron-Distal3.3790910.14543HepG2PPIG
chr142461744024617480+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.218777.80135HepG2EFTUD2
chr142461670924616869+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.4614514.93768HepG2NCBP2
chr142461689224616992+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.116795.21250HepG2SRSF1
chr142462913124629165+3'-UTR,CDS,intron-Distal3.920717.38843HepG2BUD13
chr142461786724617899+3'-UTR,CDS,intron-Distal3.632879.28206HepG2PPIG
chr142462466824624704+3'-UTR,CDS4.0518810.69967HepG2PPIG
chr142462453724624575+3'-UTR,CDS,intron-Proximal3.572184.63846HepG2PRPF8
chr142462452024624538+3'-UTR,CDS3.596427.36645HepG2PPIG
chr142462720824627267+3'-UTR,CDS,intron-Distal,intron-Proximal4.2529816.82728HepG2PRPF8
chr142461759924617657+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.6904415.51998HepG2PRPF8
chr142462943324629478+3'-UTR,CDS,intron-Proximal3.020054.30158HepG2U2AF2
chr142462649024626560+3'-UTR,CDS,intron-Proximal3.0125411.29211HepG2BUD13
chr142461671524616763+3'-UTR,5'-UTR,intron-Distal5.397755.29846HepG2DDX3X
chr142461744624617510+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.5615015.81512HepG2AQR
chr142461746624617485+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.1750915.51278HepG2PPIG
chr142462735024627409+3'-UTR,CDS,intron-Proximal3.856636.40291HepG2PABPN1
chr142462736324627406+3'-UTR,CDS,intron-Proximal4.420055.64460HepG2GRWD1
chr142462706324627129+3'-UTR,CDS,intron-Distal,intron-Proximal4.698956.03362HepG2AQR
chr142461753524617548+3'-UTR,5'-UTR,CDS,intron-Distal4.702923.53505HepG2EFTUD2
chr142461751924617561+3'-UTR,5'-UTR,CDS,intron-Distal4.761287.64336HepG2GRWD1
chr142461757924617615+3'-UTR,5'-UTR,CDS,intron-Distal4.5919315.40783HepG2PPIG
chr142461873724618783+3'-UTR,CDS,intron-Distal3.3026112.15748HepG2PPIG
chr142461685224616923+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.477573.92090HepG2GRSF1
chr142462719024627218+3'-UTR,CDS,intron-Distal4.415514.69889HepG2GRWD1
chr142462470124624716+3'-UTR,CDS3.107183.80299HepG2GRWD1
chr142461746724617501+3'-UTR,5'-UTR,CDS,intron-Distal3.099385.54854HepG2GRWD1
chr142461758424617604+3'-UTR,5'-UTR,CDS,intron-Distal4.070593.79347HepG2GRWD1
chr142461785524617882+3'-UTR,CDS,intron-Distal4.215043.59236HepG2AQR
chr142461879024618830+3'-UTR,CDS,intron-Distal,intron-Proximal4.962547.45424HepG2AQR
chr142462470424624720+3'-UTR,CDS4.6068012.18291HepG2PPIG
chr142462961024629653+3'-UTR,CDS,intron-Proximal4.6917111.57027HepG2PRPF8
chr142462119424621230+5'-UTR,CDS,intron-Proximal5.792329.75034HepG2PRPF8
chr142461732824617404+5'-UTR,CDS,intron-Distal,intron-Proximal5.4423420.73035HepG2AQR
chr142462428924624363+5'-UTR,intron-Proximal4.9691816.91373HepG2SF3B4
chr142461732024617337+5'-UTR,CDS,intron-Distal,intron-Proximal4.6109211.57027HepG2PRPF8
chr142461729624617332+5'-UTR,CDS,intron-Distal,intron-Proximal5.6788924.78808HepG2PPIG
chr142462114824621200+5'-UTR,CDS3.407929.66368HepG2PPIG
chr142462116124621206+5'-UTR,CDS,intron-Proximal4.4188010.37996HepG2BUD13
chr142462110724621148+5'-UTR,CDS4.0381212.68282HepG2PPIG
chr142462428524624354+5'-UTR,intron-Proximal3.9498812.12568HepG2SF3A3
chr142462404324624227+5'-UTR,intron-Distal3.944136.01927K562KHSRP
chr142462430424624362+5'-UTR,intron-Proximal4.462507.56947K562SF3B4
chr142462053324620587+CDS,intron-Distal3.252468.10388HepG2GRWD1
chr142462054024620589+CDS,intron-Distal,intron-Proximal5.0487126.80919HepG2PPIG
chr142462069324620706+CDS,intron-Distal,intron-Proximal3.047473.54210HepG2EIF3H
chr142462045724620541+CDS,intron-Distal,intron-Proximal3.839064.86000HepG2SRSF9
chr142462055324620605+CDS,intron-Distal,intron-Proximal3.6589611.53497HepG2BUD13
chr142462649924626515+CDS,intron-Proximal3.483136.54857HepG2PPIG
chr142462067824620799+CDS,intron-Distal,intron-Proximal3.6367119.39246HepG2BUD13
chr142462050124620578+CDS,intron-Distal,intron-Proximal3.127683.39477K562BUD13
chr142462008124620097+CDS,intron-Distal3.3761013.37061HepG2PPIG
chr142462030624620387+CDS,intron-Distal,intron-Proximal3.736206.48305HepG2EFTUD2
chr142462070624620749+CDS,intron-Distal,intron-Proximal4.035936.66963HepG2EIF3H
chr142462045424620581+CDS,intron-Distal,intron-Proximal3.226934.60395HepG2PRPF4
chr142462069824620751+CDS,intron-Distal,intron-Proximal4.321024.21159HepG2EIF3D
chr142462058624620637+CDS,intron-Distal,intron-Proximal4.548755.25202HepG2AQR
chr142462009024620136+CDS,intron-Distal,intron-Proximal3.300006.46098HepG2AQR
chr142461976624619820+CDS,intron-Distal,intron-Proximal4.157713.98427HepG2SF3B4
chr142462063024620727+CDS,intron-Distal,intron-Proximal3.276295.60181HepG2SF3B4
chr142462043124620498+CDS,intron-Distal,intron-Proximal3.519626.11001HepG2SRSF1
chr142462064424620761+CDS,intron-Distal,intron-Proximal3.911198.27668HepG2EFTUD2
chr142462066024620729+CDS,intron-Distal,intron-Proximal3.183429.66567HepG2U2AF2
chr142462049824620552+CDS,intron-Distal,intron-Proximal3.000535.63509HepG2SRSF1
chr142462031424620370+CDS,intron-Distal,intron-Proximal3.477034.80460HepG2AQR
chr142462033824620375+CDS,intron-Distal,intron-Proximal3.6777917.12315HepG2PPIG
chr142462046124620479+CDS,intron-Distal,intron-Proximal3.840107.91657HepG2PPIG
chr142462069224620748+CDS,intron-Distal,intron-Proximal4.6204122.51146HepG2PPIG
chr142462049624620540+CDS,intron-Distal,intron-Proximal4.1109615.06566HepG2PPIG
chr142461950324619544+CDS,intron-Distal5.154769.16480HepG2RBFOX2
chr142462056324620626+CDS,intron-Distal,intron-Proximal4.088367.29769HepG2PRPF8
chr142462081824620862+CDS,intron-Proximal4.0511210.98900HepG2PPIG
chr142462066424620724+CDS,intron-Distal,intron-Proximal3.6597613.55747HepG2PRPF8
chr142461629124616373+intron-Distal3.695963.72699HepG2PRPF4
chr142462698724627073+intron-Distal,intron-Proximal4.583699.68074HepG2EFTUD2
chr142461880124618825+intron-Distal,intron-Proximal4.316498.17589HepG2PRPF8
chr142462695424627043+intron-Distal,intron-Proximal4.574617.49381HepG2PCBP2
chr142462199524622042+intron-Distal4.166913.47103HepG2LIN28B
chr142462626324626468+intron-Distal,intron-Proximal3.158923.46849HepG2TAF15
chr142462028824620337+intron-Distal,intron-Proximal5.528509.67053HepG2SF3B4
chr142462919024629211+intron-Distal,intron-Proximal3.933095.89850HepG2AQR
chr142462011024620166+intron-Distal,intron-Proximal3.7216923.48513HepG2PRPF8
chr142462702324627103+intron-Distal,intron-Proximal5.031945.86025HepG2SF3B4
chr142462236424622472+intron-Distal3.551507.20478HepG2ILF3
chr142461735124617431+intron-Distal,intron-Proximal4.8764014.84321HepG2EFTUD2
chr142461970524619755+intron-Distal,intron-Proximal3.705504.74917HepG2PCBP2
chr142461920324619240+intron-Distal,intron-Proximal4.608544.97857HepG2AQR
chr142462010224620157+intron-Distal,intron-Proximal4.082954.31044HepG2U2AF1
chr142462786024627900+intron-Distal5.421845.00483K562GPKOW
chr142461733724617376+intron-Distal,intron-Proximal5.0418112.81328HepG2PRPF8
chr142461971624619746+intron-Distal,intron-Proximal3.701344.50744HepG2U2AF2
chr142462931224629430+intron-Distal,intron-Proximal4.5861710.73647HepG2AQR
chr142461777524617831+intron-Distal,intron-Proximal4.047246.32943HepG2SF3B4
chr142461777424617821+intron-Distal,intron-Proximal5.707418.93136HepG2EFTUD2
chr142462685824626908+intron-Proximal5.0146810.47516HepG2EFTUD2
chr142462726624627331+intron-Proximal4.044296.58230HepG2AQR
chr142462725624627337+intron-Proximal4.910103.82695HepG2RBM5
chr142462477824624805+intron-Proximal4.977144.75571HepG2EFTUD2
chr142462092724620988+intron-Proximal3.863884.23256HepG2EFTUD2
chr142462684724626898+intron-Proximal4.078207.08450HepG2AQR
chr142462691924626933+intron-Proximal4.085694.61506HepG2EFTUD2
chr142462684724626895+intron-Proximal4.3901017.48691HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF31 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF31 is not available on ENCORE database.

  • 72 RBPs can affect the levels of RNF31.  








The Knockdown/knockout RNA-Seq assay for RNF31 is not available on ENCORE database.





72 RBPs can affect the gene expression of RNF31 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF31ENSG00000092098.121980.268801487.794400.412407.780606.86470HepG2ACO1
RNF31ENSG00000092098.122625.701501719.208700.610905.257804.55340HepG2AKAP1
RNF31ENSG00000092098.122004.220601494.727100.423107.189306.01960HepG2AKAP8L
RNF31ENSG00000092098.12871.242701149.74240-0.400202.836402.05540HepG2CALR
RNF31ENSG00000092098.121851.450401487.402100.315805.099204.24640HepG2CKAP4
RNF31ENSG00000092098.12665.670801003.65010-0.592403.951702.22100HepG2CSTF2T
RNF31ENSG00000092098.122179.639801542.843900.498409.346108.29530HepG2CELF1
RNF31ENSG00000092098.121746.490801375.965000.343905.639304.50370HepG2DDX19B
RNF31ENSG00000092098.121280.092201007.930300.344803.545602.23550HepG2DDX1
RNF31ENSG00000092098.12795.038601057.92210-0.412103.691102.62570HepG2DDX24
RNF31ENSG00000092098.121770.036701279.426100.468202.319501.60490HepG2DDX55
RNF31ENSG00000092098.121641.706401423.398300.205801.920401.34070HepG2DKC1
RNF31ENSG00000092098.121351.25320979.605800.463908.574007.50270HepG2DNAJC2
RNF31ENSG00000092098.121608.050201184.250600.441202.659701.75340HepG2EEF2
RNF31ENSG00000092098.12593.96910995.46330-0.745004.456503.03980HepG2AGO1
RNF31ENSG00000092098.122205.653601502.471500.553804.765003.92870HepG2EIF4A3
RNF31ENSG00000092098.122176.905101567.784600.473505.004203.92980HepG2EIF4G2
RNF31ENSG00000092098.122174.992102497.97180-0.199702.438101.86720HepG2ETF1
RNF31ENSG00000092098.12830.206401335.22110-0.685502.655901.66150HepG2FTO
RNF31ENSG00000092098.12850.538701127.85540-0.407103.683802.78560HepG2FUBP3
RNF31ENSG00000092098.122208.430801516.686200.542005.409404.46360HepG2FXR1
RNF31ENSG00000092098.121292.32900855.811000.594505.818504.51650HepG2GEMIN5
RNF31ENSG00000092098.121598.16010997.801600.679509.609708.51260HepG2HNRNPA1
RNF31ENSG00000092098.122197.221001425.188500.624407.234806.14570HepG2HNRNPK
RNF31ENSG00000092098.121903.503601511.102600.333005.791604.84720HepG2HNRNPL
RNF31ENSG00000092098.121978.877701651.638800.260702.107101.46850HepG2IGF2BP1
RNF31ENSG00000092098.121409.620501126.199900.323704.778503.83730HepG2ILF2
RNF31ENSG00000092098.122266.429201517.219000.578905.947004.99690HepG2MAGOH
RNF31ENSG00000092098.122319.302901561.424100.570705.579104.69370HepG2NCBP2
RNF31ENSG00000092098.122103.220401644.950300.354503.410202.56520HepG2NOL12
RNF31ENSG00000092098.12762.819601278.53950-0.745109.033207.73850HepG2NSUN2
RNF31ENSG00000092098.121785.937201449.735500.300803.812503.12420HepG2PCBP1
RNF31ENSG00000092098.121176.19690983.370400.258202.231101.56210HepG2PPIL4
RNF31ENSG00000092098.121052.771301337.93020-0.345804.197703.26710HepG2PRPF4
RNF31ENSG00000092098.122098.632501475.148900.5085010.294809.37010HepG2PTBP1
RNF31ENSG00000092098.122441.456001666.919600.5505017.0405015.82760HepG2PUM1
RNF31ENSG00000092098.122357.715301665.691900.501204.881904.00420HepG2PUM2
RNF31ENSG00000092098.121166.535001597.64640-0.453705.920705.05470HepG2QKI
RNF31ENSG00000092098.121713.630102087.82650-0.284903.120502.57880HepG2RBM22
RNF31ENSG00000092098.122235.412201641.708400.445207.797106.97080HepG2NELFE
RNF31ENSG00000092098.121446.370001807.02820-0.321202.705502.02800HepG2RPLP0
RNF31ENSG00000092098.121448.21180935.437600.630507.705806.74120HepG2RPS19
RNF31ENSG00000092098.121110.12580834.514800.411602.239301.51950HepG2RPS3A
RNF31ENSG00000092098.121241.08680981.853500.337904.342403.56730HepG2SAFB2
RNF31ENSG00000092098.121238.24240938.663000.399502.850501.89640HepG2SERBP1
RNF31ENSG00000092098.123521.101801875.860500.9084010.116508.76410HepG2SF3A3
RNF31ENSG00000092098.121047.274601427.15190-0.446503.988703.15560HepG2SF3B1
RNF31ENSG00000092098.122268.044801535.840400.5623012.3819011.27300HepG2SF3B4
RNF31ENSG00000092098.121513.655301145.007100.402607.219606.25640HepG2SMN1
RNF31ENSG00000092098.121585.413902358.09560-0.5728015.2082014.28250HepG2SRFBP1
RNF31ENSG00000092098.122253.389501603.076700.4912010.440909.65270HepG2SRSF1
RNF31ENSG00000092098.121146.166601535.69830-0.422102.569001.60820HepG2SRSF3
RNF31ENSG00000092098.122337.333201550.425300.5921014.5262013.25240HepG2SRSF5
RNF31ENSG00000092098.121946.392501647.921700.240102.461001.80070HepG2SRSF7
RNF31ENSG00000092098.121106.443801304.18130-0.237202.433801.90920HepG2SRSF9
RNF31ENSG00000092098.122522.047102047.337000.300704.616903.98810HepG2SSB
RNF31ENSG00000092098.122878.570401763.244100.7070025.4742023.89890HepG2SUCLG1
RNF31ENSG00000092098.12960.692201273.47550-0.406602.110401.50930HepG2SUPV3L1
RNF31ENSG00000092098.12970.912601440.88530-0.569508.806307.89710HepG2TAF15
RNF31ENSG00000092098.121790.487001405.515500.349202.805302.07700HepG2TARDBP
RNF31ENSG00000092098.121533.616701071.315800.517507.184506.44770HepG2TIAL1
RNF31ENSG00000092098.121312.394201080.892600.279903.073102.48620HepG2TRIM56
RNF31ENSG00000092098.122259.366201534.106900.558404.407403.27310HepG2TUFM
RNF31ENSG00000092098.122068.175001709.971600.274303.320602.18500HepG2UTP18
RNF31ENSG00000092098.12971.119401320.40340-0.443307.449006.43560HepG2ZC3H8
RNF31ENSG00000092098.12782.59950610.596700.358003.094601.91900K562CPEB4
RNF31ENSG00000092098.12856.96280632.016700.439204.853904.02490K562DDX47
RNF31ENSG00000092098.12309.53070177.170900.804806.521605.31530K562EIF3G
RNF31ENSG00000092098.12492.29470354.738400.472703.002802.14990K562EIF4A3
RNF31ENSG00000092098.12510.17230368.909300.467603.495002.82680K562FXR1
RNF31ENSG00000092098.1227.24500128.61980-2.2390011.7114010.05550K562G3BP2
RNF31ENSG00000092098.12728.36650571.116900.350802.405501.42760K562HNRNPL
RNF31ENSG00000092098.12375.46010253.456900.566802.121001.52670K562PTBP1
RNF31ENSG00000092098.12544.66810358.194600.604503.457902.54230K562RPS19
RNF31ENSG00000092098.12295.48860133.791001.1430010.692508.95730K562SF3B4
RNF31ENSG00000092098.12471.51730673.92540-0.515305.855604.56020K562SRPK2
RNF31ENSG00000092098.12428.35910248.510600.785404.630003.71940K562SRSF1
RNF31ENSG00000092098.12573.21830251.426301.188805.505304.48960K562TARDBP
RNF31ENSG00000092098.12418.77320242.550800.787804.372303.30540K562TIA1
RNF31ENSG00000092098.12375.84590238.210000.657802.739401.65430K562TRA2A
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF31 is not available on ENCORE database.





9 RBPs can affect the splicing of RNF31 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSRNF31ENSG00000092098.12chr14+246174662461768624617466246176222461785024617910-0.113000.000040.01466shorterHepG2SUPV3L1
A5SSRNF31ENSG00000092098.12chr14+2461746624617686246174662461762224617850246179100.131000.003590.05487longerK562AQR
A5SSRNF31ENSG00000092098.12chr14+246174662461768624617466246176222461785024617910-0.096000.000050.03490shorterHepG2DDX55
A5SSRNF31ENSG00000092098.12chr14+2461746624617686246174662461762224617850246179100.292000.000030.00545longerK562PRPF8
A5SSRNF31ENSG00000092098.12chr14+2461746624617686246174662461762224617850246179100.079000.000010.00212longerHepG2SF3A3
A5SSRNF31ENSG00000092098.12chr14+2461746624617686246174662461762224617850246179100.116000.000120.03265longerHepG2PCBP2
A5SSRNF31ENSG00000092098.12chr14+2461746624617686246174662461762224617850246179100.289000.000000.00010longerK562EFTUD2
A5SSRNF31ENSG00000092098.12chr14+2461746624617686246174662461762224617850246179100.095000.000340.04866longerHepG2MATR3
RIRNF31ENSG00000092098.12chr14+2462416824624539246241682462424124624365246245390.139000.003880.03710includedHepG2U2AF1
RIRNF31ENSG00000092098.12chr14+246267282462711724626728246268472462704024627117-0.489000.000260.00376excludedHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNF31 is not avaliable on ENCORE database.