HMGN3

General Information

Gene Name       : HMGN3
Gene ID             : ENSG00000118418.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HMGN3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HMGN3ENSG00000118418.14170.03149.92159.97ENCSR000AEF
HepG2HMGN3ENSG00000118418.14100.11166.92133.51ENCSR985KAT
K562HMGN3ENSG00000118418.1443.4746.2444.86ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HMGN3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HMGN3 RNA is bound by 10 proteins.  







eCLIP assay for HMGN3 is not avaliable on ENCORE database.





10 proteins are bound to HMGN3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr67991135179911374-3'-UTR,intron-Distal4.301654.68960HepG2ZC3H11A
chr67991140379911453-3'-UTR,CDS,intron-Distal5.1104110.62929K562U2AF2
chr67991140179911457-3'-UTR,CDS,intron-Distal4.570705.16342K562SF3B4
chr67991141679911455-3'-UTR,CDS,intron-Distal4.472103.02097K562U2AF1
chr67991140879911459-3'-UTR,CDS,intron-Distal4.5582824.44851HepG2U2AF2
chr67994426279944304-5'-UTR,CDS,intron-Distal4.1520313.58160K562DDX3X
chr67994430879944377-5'-UTR,intron-Distal3.853476.98150K562DDX3X
chr67991826279918277-CDS,intron-Distal,intron-Proximal3.869373.01531K562YBX3
chr67991200679912107-CDS,intron-Distal,intron-Proximal3.4592723.81262HepG2PPIG
chr67992468879924723-CDS,intron-Distal,intron-Proximal3.034528.02563HepG2GRWD1
chr67991826579918283-CDS,intron-Distal3.614037.26626HepG2PPIG
chr67991329679913316-CDS,intron-Distal,intron-Proximal4.396929.58174HepG2PPIG
chr67991155579911602-intron-Distal4.089159.06734HepG2U2AF2
chr67991184179911948-intron-Distal,intron-Proximal3.199887.42856K562KHSRP
chr67991191379911936-intron-Distal,intron-Proximal3.455876.47196HepG2BCLAF1
chr67991184579911885-intron-Distal4.013158.23042HepG2U2AF2
chr67991180379911884-intron-Distal4.327225.33616HepG2U2AF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HMGN3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HMGN3 is not available on ENCORE database.

  • 91 RBPs can affect the levels of HMGN3.  








The Knockdown/knockout RNA-Seq assay for HMGN3 is not available on ENCORE database.





91 RBPs can affect the gene expression of HMGN3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HMGN3ENSG00000118418.10624.61360928.21150-0.571508.839207.87830HepG2ACO1
HMGN3ENSG00000118418.10690.12460939.45670-0.445002.816101.77050HepG2AKAP8
HMGN3ENSG00000118418.101247.09350900.688900.469403.758602.84790HepG2ASCC1
HMGN3ENSG00000118418.101239.784001462.60740-0.238502.497701.83960HepG2AUH
HMGN3ENSG00000118418.10631.38450937.23600-0.569904.369403.26430HepG2BCLAF1
HMGN3ENSG00000118418.101109.793002065.72420-0.8964016.0468014.77730HepG2BOP1
HMGN3ENSG00000118418.101144.46530855.705500.419403.163402.33810HepG2CIRBP
HMGN3ENSG00000118418.101245.115101896.42350-0.607007.395906.31390HepG2CPSF6
HMGN3ENSG00000118418.10598.15330762.61610-0.350402.894501.85290HepG2YBX3
HMGN3ENSG00000118418.10868.96410666.278600.383102.826001.74050HepG2CSTF2
HMGN3ENSG00000118418.101009.525701449.90200-0.522308.670907.65290HepG2CELF1
HMGN3ENSG00000118418.101000.01390777.154400.363602.231601.42170HepG2DDX24
HMGN3ENSG00000118418.101738.066501042.788100.736908.599807.54760HepG2DDX3X
HMGN3ENSG00000118418.10650.158701060.45470-0.705805.852804.77970HepG2DDX55
HMGN3ENSG00000118418.10966.317002153.53610-1.1561010.515808.69450HepG2DDX59
HMGN3ENSG00000118418.10502.35800895.60510-0.834107.716006.73230HepG2DDX6
HMGN3ENSG00000118418.101153.53550888.023800.377304.405903.58740HepG2DKC1
HMGN3ENSG00000118418.101422.00560976.703900.541805.178003.95220HepG2EEF2
HMGN3ENSG00000118418.101743.712102149.67840-0.302001.917201.37810HepG2GPKOW
HMGN3ENSG00000118418.101668.50900755.988601.142009.869408.75980HepG2HNRNPA1
HMGN3ENSG00000118418.101258.22470840.906000.581306.260105.25010HepG2HNRNPC
HMGN3ENSG00000118418.101175.167601624.15990-0.466806.673505.62500HepG2HNRNPF
HMGN3ENSG00000118418.101371.772102051.48370-0.580606.420805.50620HepG2HNRNPLL
HMGN3ENSG00000118418.101766.51400835.345801.0804037.6525035.64380HepG2HNRNPU
HMGN3ENSG00000118418.101394.347101022.853600.446902.768001.54050HepG2HSPD1
HMGN3ENSG00000118418.101054.103601599.35050-0.601503.318002.53070HepG2IGF2BP1
HMGN3ENSG00000118418.10586.77400848.44610-0.532007.875706.22280HepG2KIF1C
HMGN3ENSG00000118418.101799.864601022.080100.816307.768205.70390HepG2KRR1
HMGN3ENSG00000118418.101184.56560846.792400.484204.334602.81560HepG2LIN28B
HMGN3ENSG00000118418.101124.45320809.076500.474803.432801.52940HepG2LSM11
HMGN3ENSG00000118418.101573.56230988.548400.670606.994106.00910HepG2NCBP2
HMGN3ENSG00000118418.101109.541601546.09230-0.478706.817705.62640HepG2NOL12
HMGN3ENSG00000118418.10172.23760384.51240-1.158603.308802.33260HepG2PABPC1
HMGN3ENSG00000118418.10912.739701090.36800-0.256502.217501.51760HepG2PRPF4
HMGN3ENSG00000118418.101618.841301015.445200.672704.217902.73040HepG2PRPF6
HMGN3ENSG00000118418.101330.92620972.522100.452506.634905.86010HepG2PTBP1
HMGN3ENSG00000118418.101044.879301565.48310-0.583309.003607.82840HepG2PUM2
HMGN3ENSG00000118418.101260.18400945.430500.414506.147905.29460HepG2PUS1
HMGN3ENSG00000118418.10511.10040932.08910-0.866905.375004.41020HepG2RAVER1
HMGN3ENSG00000118418.101150.224601403.63030-0.287202.652902.14300HepG2RBM22
HMGN3ENSG00000118418.10547.46910955.90190-0.8041011.002109.71770HepG2RBM25
HMGN3ENSG00000118418.101039.14000789.746900.395802.576101.55420HepG2RCC2
HMGN3ENSG00000118418.101414.727301082.320700.386304.923104.23740HepG2NELFE
HMGN3ENSG00000118418.101179.179601749.36850-0.569106.510405.52590HepG2RPLP0
HMGN3ENSG00000118418.10802.03740422.119800.925907.760006.43880HepG2RPS3A
HMGN3ENSG00000118418.10550.84390809.32460-0.555103.650502.76470HepG2RRP9
HMGN3ENSG00000118418.101498.908002030.52580-0.437904.480303.59930HepG2SF3B1
HMGN3ENSG00000118418.101044.578301414.94960-0.437807.900806.80720HepG2SLBP
HMGN3ENSG00000118418.10531.81790909.58930-0.774303.184401.46320HepG2SLTM
HMGN3ENSG00000118418.101169.23760867.513400.430506.868605.92490HepG2SMN1
HMGN3ENSG00000118418.101262.396202532.84070-1.004603.604102.06340HepG2SNRNP200
HMGN3ENSG00000118418.101593.029102259.32960-0.504103.087002.26100HepG2SNRNP70
HMGN3ENSG00000118418.101261.239501585.30640-0.329903.724103.16920HepG2SRFBP1
HMGN3ENSG00000118418.101642.921501056.848500.6364013.4624012.58800HepG2SRSF1
HMGN3ENSG00000118418.101194.770001595.62580-0.417401.936201.34310HepG2SRSF7
HMGN3ENSG00000118418.10453.46490859.80490-0.9230018.5764017.37840HepG2SRSF9
HMGN3ENSG00000118418.101866.050401376.347300.439007.664906.89400HepG2SSB
HMGN3ENSG00000118418.101990.384201657.171500.264203.384502.71020HepG2SUCLG1
HMGN3ENSG00000118418.10783.359401055.69270-0.430402.517801.86880HepG2SUPV3L1
HMGN3ENSG00000118418.10523.41880707.60990-0.435002.512401.55630HepG2TFIP11
HMGN3ENSG00000118418.10553.74690872.86130-0.656508.018006.60960HepG2TIA1
HMGN3ENSG00000118418.10663.88620818.95250-0.302802.630802.07760HepG2TRIM56
HMGN3ENSG00000118418.102350.525701452.289400.694603.288402.60870HepG2U2AF1
HMGN3ENSG00000118418.10848.325801525.95610-0.8470010.050608.41560HepG2UBE2L3
HMGN3ENSG00000118418.101122.280101444.33830-0.364005.256304.34250HepG2UPF1
HMGN3ENSG00000118418.10667.82010378.066100.820705.548903.99330HepG2XPO5
HMGN3ENSG00000118418.101626.601301025.144400.665905.099803.68940HepG2XRCC6
HMGN3ENSG00000118418.101269.631201076.024300.238602.068101.47450HepG2ZC3H8
HMGN3ENSG00000118418.10985.122601588.50100-0.6893019.3402018.21600HepG2ZNF622
HMGN3ENSG00000118418.10773.58270535.590600.530304.840903.96790K562AKAP8L
HMGN3ENSG00000118418.101217.89370934.454500.382102.956001.67310K562APOBEC3C
HMGN3ENSG00000118418.10493.57860754.43760-0.612104.849504.11180K562AQR
HMGN3ENSG00000118418.10773.38340561.979700.460604.884503.63280K562ATP5C1
HMGN3ENSG00000118418.10307.58350430.44990-0.484903.637502.52950K562BCLAF1
HMGN3ENSG00000118418.10878.290201130.68950-0.364403.644702.36810K562CPEB4
HMGN3ENSG00000118418.10491.15770821.93000-0.742802.342801.61490K562CPSF6
HMGN3ENSG00000118418.10210.95710326.56050-0.630403.686402.44220K562CSTF2
HMGN3ENSG00000118418.10761.04620576.280300.401103.931402.86320K562DKC1
HMGN3ENSG00000118418.10208.26360352.00390-0.757204.932503.69830K562EFTUD2
HMGN3ENSG00000118418.10244.41030345.04180-0.497502.786301.96200K562EIF4A3
HMGN3ENSG00000118418.101358.626801059.021300.359304.086902.94970K562EIF4G2
HMGN3ENSG00000118418.10457.48410358.828000.350302.121401.57890K562FXR1
HMGN3ENSG00000118418.10229.60620352.90260-0.620103.278101.70800K562GEMIN5
HMGN3ENSG00000118418.10473.99010688.96350-0.539605.467603.89510K562GLRX3
HMGN3ENSG00000118418.10326.88850458.07400-0.486802.945202.33190K562HNRNPC
HMGN3ENSG00000118418.10710.04150484.455900.551405.836904.52640K562HNRNPU
HMGN3ENSG00000118418.10876.02280568.365600.624004.459703.37650K562KIF1C
HMGN3ENSG00000118418.10851.87610636.717200.419903.630202.56640K562MBNL1
HMGN3ENSG00000118418.10695.54850446.295300.640104.218703.06190K562NAA15
HMGN3ENSG00000118418.10553.34530804.79290-0.540406.746005.64950K562NSUN2
HMGN3ENSG00000118418.101598.744901155.466600.468404.213403.21190K562PUF60
HMGN3ENSG00000118418.101764.629901229.059600.521707.033905.27620K562PUM1
HMGN3ENSG00000118418.10856.75850531.097900.689806.730005.92620K562PUS1
HMGN3ENSG00000118418.10706.95920517.525500.449904.184003.47090K562RBM15
HMGN3ENSG00000118418.10582.81680794.18250-0.446404.364503.35860K562SF3A3
HMGN3ENSG00000118418.10317.09750424.43580-0.420602.061401.32550K562SF3B4
HMGN3ENSG00000118418.10637.07460813.66230-0.353003.419102.39190K562SRPK2
HMGN3ENSG00000118418.10194.97580331.71300-0.766604.366003.06280K562SUPV3L1
HMGN3ENSG00000118418.10295.59730419.57840-0.505302.489101.60000K562TRIM56
HMGN3ENSG00000118418.10530.62280730.17280-0.460603.814302.78250K562WDR3
HMGN3ENSG00000118418.10644.77660893.70460-0.471004.260902.64960K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HMGN3 is not available on ENCORE database.





40 RBPs can affect the splicing of HMGN3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.170000.000010.01407includedK562TAF15
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.210000.000000.00001includedK562SRSF1
SEHMGN3ENSG00000118418.10chr6-799120337991210679910961799114437991329679913347-0.054000.000050.00186excludedK562SRSF1
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.096000.000000.00000includedK562FTO
SEHMGN3ENSG00000118418.10chr6-799182637991829379913296799133477992468879924739-0.057000.002690.04587excludedK562SF3B4
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.140000.000000.00001includedK562WDR3
SEHMGN3ENSG00000118418.10chr6-799120337991210279910961799114437991329679913376-0.131000.000010.00043excludedHepG2U2AF1
SEHMGN3ENSG00000118418.10chr6-799117857991187279910961799114437991199279912106-0.059000.001120.03448excludedK562AKAP8L
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.166000.000000.00000includedK562FMR1
SEHMGN3ENSG00000118418.10chr6-799117727991187279910961799114437991199279912106-0.057000.000080.01103excludedHepG2TBRG4
SEHMGN3ENSG00000118418.10chr6-799120337991210679910961799114437991329679913347-0.059000.000000.00000excludedHepG2U2AF2
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.100000.000000.00001includedHepG2AKAP1
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.154000.000000.00000includedK562METAP2
SEHMGN3ENSG00000118418.10chr6-799117727991187279910961799114437991199279912106-0.095000.000000.00008excludedK562FXR1
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.055000.000000.00054includedK562DROSHA
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.107000.000000.00084includedHepG2TIA1
SEHMGN3ENSG00000118418.10chr6-799119927991210679910961799114437991329679913347-0.052000.000000.00018excludedK562PUS1
SEHMGN3ENSG00000118418.10chr6-799117727991187279910961799114437991199279912106-0.070000.000000.00001excludedHepG2EFTUD2
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.177000.000000.00000includedK562NSUN2
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.076000.000000.00029includedK562BUD13
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.070000.000000.00000includedHepG2HNRNPL
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.051000.000160.01667includedK562HNRNPL
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.117000.000010.01867includedK562DDX21
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.082000.000000.00001includedHepG2SRSF1
SEHMGN3ENSG00000118418.10chr6-799182637991829379913296799133477992468879924739-0.062000.000000.00000excludedHepG2SF3A3
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.126000.000000.00000includedK562HNRNPUL1
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.054000.000000.00097includedHepG2NOL12
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.171000.000000.00006includedK562SRSF7
SEHMGN3ENSG00000118418.10chr6-799182637991829379913296799133477992468879924739-0.065000.000390.02180excludedHepG2SF3B4
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.121000.000000.00000includedHepG2TAF15
SEHMGN3ENSG00000118418.10chr6-799119927991210679910961799114437991329679913347-0.088000.000000.00012excludedK562TARDBP
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.207000.000000.00000includedK562CPSF6
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.091000.000000.00000includedK562SF3B1
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.106000.000000.00060includedK562ZC3H8
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.055000.000270.05914includedHepG2PRPF4
SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.066000.000010.03850includedK562CPEB4
A3SSHMGN3ENSG00000118418.10chr6-7991329679913376799132967991334779918263799182930.072000.000000.00001longerK562AQR
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.109000.000120.05746longerHepG2LARP4
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.124000.000620.06194longerK562U2AF1
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.291000.000000.00000longerK562TARDBP
A5SSHMGN3ENSG00000118418.10chr6-799119927991210679912033799121067991096179911443-0.130000.000030.02506shorterK562CPSF6
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.302000.000000.00000longerHepG2HNRNPU
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.222000.000000.00000longerHepG2U2AF2
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.163000.000010.00284longerHepG2NCBP2
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.159000.000010.00074longerHepG2SRSF1
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.278000.000000.00000longerK562PRPF8
A5SSHMGN3ENSG00000118418.10chr6-7991199279912178799120337991217879910961799114430.250000.000000.00000longerHepG2SF3A3
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.129000.000410.08200longerHepG2PCBP2
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.248000.000000.00014longerK562EFTUD2
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.227000.000000.00001longerK562HNRNPU
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.129000.000130.06077longerHepG2XRN2
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.150000.000000.01069longerHepG2XRCC6
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.140000.000000.00034longerHepG2FTO
A5SSHMGN3ENSG00000118418.10chr6-7991199279912106799120337991210679910961799114430.266000.000000.00000longerHepG2U2AF1
MXEHMGN3ENSG00000118418.10chr6-7991199279912106799132967991334779910961799114437991826379918293-0.186000.000000.000002includedHepG2U2AF1
MXEHMGN3ENSG00000118418.10chr6-79918263799182937992468879924739799132967991334779944262799444060.152000.001280.039541includedK562UCHL5

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HMGN3 is not avaliable on ENCORE database.