CCDC106

General Information

Gene Name       : CCDC106
Gene ID             : ENSG00000173581.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC106)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC106ENSG00000173581.74.8713.088.97ENCSR000AEF
HepG2CCDC106ENSG00000173581.710.887.289.08ENCSR985KAT
K562CCDC106ENSG00000173581.715.8412.8814.36ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC106 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC106 RNA is bound by 24 proteins.  







eCLIP assay for CCDC106 is not avaliable on ENCORE database.





24 proteins are bound to CCDC106 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195616434456164442+3'-UTR7.4465863.46426K562PUM2
chr195616427156164374+3'-UTR4.835467.59520K562PCBP1
chr195616417256164258+3'-UTR4.007784.59413K562PCBP1
chr195615254056152600+5'-UTR,intron-Distal,intron-Proximal3.9089312.32657HepG2CSTF2T
chr195615254556152605+5'-UTR,intron-Distal,intron-Proximal4.9749710.29014HepG2FAM120A
chr195615238656152456+5'-UTR,intron-Distal4.0717315.24811HepG2CSTF2T
chr195615252856152587+5'-UTR,intron-Distal,intron-Proximal3.941753.82910K562NONO
chr195615239456152449+5'-UTR,intron-Distal3.464775.38180HepG2FAM120A
chr195615246456152518+5'-UTR,intron-Distal3.293138.77966HepG2CSTF2T
chr195615240956152429+5'-UTR,intron-Distal3.797603.25631HepG2PRPF4
chr195615243056152508+5'-UTR,intron-Distal3.494075.08370HepG2DDX3X
chr195615246256152528+5'-UTR,intron-Distal3.633414.48585K562NONO
chr195615254656152593+5'-UTR,intron-Distal,intron-Proximal4.552874.66211HepG2XRN2
chr195615364856153684+5'-UTR,intron-Distal3.940483.63122HepG2PRPF4
chr195615339556153454+5'-UTR,intron-Distal4.665256.76416K562CSTF2T
chr195615537956155443+intron-Distal4.892736.19429HepG2CSTF2T
chr195615441856154541+3'-UTR,intron-Distal3.064444.38283HepG2LARP4
chr195615519156155282+5'-UTR,intron-Distal,intron-Proximal3.194656.15688HepG2FAM120A
chr195615272856152809+intron-Distal5.2358523.29254HepG2FAM120A
chr195615279556152994+intron-Distal3.065985.50689HepG2FKBP4
chr195615634256156361+CDS,intron-Distal4.018217.93174K562YBX3
chr195615294756152992+intron-Distal4.119069.35150HepG2FAM120A
chr195615294256152996+intron-Distal3.867409.48840K562CSTF2T
chr195615519056155261+5'-UTR,intron-Distal,intron-Proximal3.881303.70058K562CSTF2T
chr195615479256154810+3'-UTR,intron-Distal3.924095.86001HepG2CSTF2T
chr195615268256152793+intron-Distal3.222353.52283HepG2SAFB
chr195615458856154639+3'-UTR,intron-Distal3.7147810.31453K562PABPC4
chr195615293856153010+intron-Distal5.646349.43216K562GTF2F1
chr195615294356152992+intron-Distal3.880095.73324K562FAM120A
chr195615272856152755+intron-Distal4.163613.11728K562FAM120A
chr195615679556156878+3'-UTR,intron-Distal6.7094615.65822K562PABPC4
chr195615588856155953+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.911646.06472K562AQR
chr195615326156153325+intron-Distal3.805806.24931HepG2PRPF4
chr195615305256153097+intron-Distal3.918743.05512HepG2PRPF4
chr195615299256153021+intron-Distal3.270653.68667HepG2FAM120A
chr195615451956154555+3'-UTR,intron-Distal3.810873.06406HepG2IGF2BP1
chr195615267556152753+intron-Distal4.640976.64417K562NONO
chr195615397756154046+CDS,intron-Distal3.416094.78882K562IGF2BP2
chr195615326856153314+intron-Distal4.599355.81141K562CSTF2T
chr195615299956153025+intron-Distal3.825903.48722HepG2PRPF4
chr195615438356154443+3'-UTR,CDS,intron-Distal3.227253.67697K562YBX3
chr195615451956154572+3'-UTR,intron-Distal3.882286.50713K562IGF2BP2
chr195615266756152748+intron-Distal5.003117.57617HepG2GTF2F1
chr195615354656153584+5'-UTR,intron-Distal,intron-Proximal3.223827.46255HepG2CSTF2T
chr195615266756152728+intron-Distal4.6957822.11888HepG2FAM120A
chr195615606556156096+CDS,intron-Distal3.914675.73766K562YBX3
chr195615374156153783+5'-UTR,intron-Distal,intron-Proximal3.409449.07843HepG2CSTF2T
chr195615341056153467+5'-UTR,intron-Distal3.170443.14777HepG2GTF2F1
chr195615610656156172+CDS,intron-Distal3.143305.34378K562YBX3
chr195615485356154897+intron-Distal3.665256.00014K562CSTF2T
chr195615270456152793+intron-Distal3.830323.05863HepG2CSTF2
chr195615636156156388+CDS,intron-Distal3.453017.02805K562YBX3
chr195615273756152801+intron-Distal3.8475210.19162K562CSTF2T
chr195615689256156948+3'-UTR,intron-Distal4.781587.34770K562YBX3
chr195615484156154913+intron-Distal4.678487.03187HepG2CSTF2
chr195615265256152821+intron-Distal4.378315.92430K562AKAP8L
chr195615440056154480+3'-UTR,intron-Distal3.328029.91296HepG2CSTF2T
chr195615293756152999+intron-Distal4.957747.58609HepG2PRPF4
chr195615428156154396+3'-UTR,CDS,intron-Distal4.2942116.93479HepG2CSTF2T
chr195615285056152896+intron-Distal3.411443.72797K562GTF2F1
chr195615373256153790+5'-UTR,intron-Distal,intron-Proximal4.769545.80843K562CSTF2T
chr195615261656152667+intron-Distal,intron-Proximal4.092177.41671HepG2FAM120A
chr195615459456154638+3'-UTR,intron-Distal5.3243910.48231HepG2CSTF2T
chr195615267856152737+intron-Distal4.5130012.16230K562CSTF2T
chr195615395556154033+CDS,intron-Distal4.5375911.72839K562PCBP1
chr195615678256156915+3'-UTR,intron-Distal3.600464.24288K562UPF1
chr195615267056152801+intron-Distal5.6667614.02567K562GTF2F1
chr195615340056153443+5'-UTR,intron-Distal4.051295.44474HepG2FAM120A
chr195615299256153029+intron-Distal4.456094.64560K562FAM120A
chr195615484156154901+intron-Distal4.920544.91909K562FMR1
chr195615449756154519+3'-UTR,intron-Distal4.517035.30214K562IGF2BP2
chr195615273256152781+intron-Distal4.252894.07810K562UPF1
chr195615273056152801+intron-Distal4.8124720.31027HepG2CSTF2T
chr195615273056152800+intron-Distal4.8217515.23846HepG2PRPF4
chr195615485056154902+intron-Distal3.605935.68177HepG2CSTF2T
chr195615295556153025+intron-Distal3.363364.01575K562NONO
chr195615284556152902+intron-Distal3.348196.38416HepG2FAM120A
chr195615270856152780+intron-Distal5.116944.41467K562DDX52
chr195615293856153016+intron-Distal4.3257817.90410HepG2CSTF2T
chr195615588956155978+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.027294.92499HepG2AQR
chr195615319256153206+intron-Distal3.166083.69530HepG2CSTF2T
chr195615519456155335+5'-UTR,intron-Distal,intron-Proximal3.847375.82826HepG2PRPF4
chr195615283056152907+intron-Distal3.7414814.43060HepG2CSTF2T
chr195615353856153587+5'-UTR,intron-Distal,intron-Proximal3.295673.47229K562GTF2F1
chr195615467856154744+3'-UTR,intron-Distal6.8222717.95058HepG2XPO5
chr195615263056152730+intron-Distal,intron-Proximal5.3069021.02579HepG2PRPF4
chr195615274856152806+intron-Distal4.886926.97401HepG2GTF2F1
chr195615272556152803+intron-Distal4.607294.44779HepG2FASTKD2
chr195615327856153320+intron-Distal4.668234.06667K562GTF2F1
chr195615456856154686+3'-UTR,intron-Distal3.287133.87422HepG2CSTF2
chr195615264156152730+intron-Distal,intron-Proximal5.5888226.14878HepG2CSTF2T
chr195615325856153311+intron-Distal4.584374.85237K562UPF1
chr195615284456152922+intron-Distal3.6866811.76164K562CSTF2T
chr195615648456156536+3'-UTR,CDS,intron-Distal4.705584.48692K562YBX3
chr195615254956152595+intron-Distal,intron-Proximal4.152183.01994HepG2GTF2F1
chr195615256056152576+intron-Distal,intron-Proximal4.210123.19125K562GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC106 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC106 is not available on ENCORE database.

  • 94 RBPs can affect the levels of CCDC106.  








The Knockdown/knockout RNA-Seq assay for CCDC106 is not available on ENCORE database.





94 RBPs can affect the gene expression of CCDC106 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC106ENSG00000173581.3304.27810221.538600.457702.724102.12100HepG2ACO1
CCDC106ENSG00000173581.3302.88100155.231300.964205.342504.63270HepG2AKAP1
CCDC106ENSG00000173581.380.57870128.44120-0.672602.001201.32920HepG2ASCC1
CCDC106ENSG00000173581.3216.0701096.204901.167203.510802.45790HepG2BCCIP
CCDC106ENSG00000173581.3302.77330221.507900.450802.688802.03090HepG2CKAP4
CCDC106ENSG00000173581.3152.7369056.451501.435906.055304.92250HepG2CNOT7
CCDC106ENSG00000173581.3216.10590127.778100.758004.285303.51650HepG2CELF1
CCDC106ENSG00000173581.3320.32180204.899500.644505.430404.31520HepG2DDX19B
CCDC106ENSG00000173581.3344.79770148.700601.213209.517108.41750HepG2DDX3X
CCDC106ENSG00000173581.3244.0936094.599301.367407.135305.96290HepG2DDX55
CCDC106ENSG00000173581.3229.82310127.735100.847301.939501.41380HepG2DDX6
CCDC106ENSG00000173581.3136.0079077.724400.807203.301702.53830HepG2DNAJC21
CCDC106ENSG00000173581.3186.0510077.038901.271909.751908.61680HepG2DNAJC2
CCDC106ENSG00000173581.3217.41620127.420300.770803.003702.04520HepG2EEF2
CCDC106ENSG00000173581.3206.79330122.796700.751803.277902.63630HepG2EIF2S1
CCDC106ENSG00000173581.3221.19050135.705600.704702.957702.29620HepG2EIF4A3
CCDC106ENSG00000173581.3225.16150322.60090-0.518801.889601.37270HepG2ETF1
CCDC106ENSG00000173581.3147.3857092.479700.672302.486201.38090HepG2FAM120A
CCDC106ENSG00000173581.378.49450164.91410-1.071102.906301.86370HepG2FTO
CCDC106ENSG00000173581.3302.51520136.918601.143608.011506.88290HepG2FXR1
CCDC106ENSG00000173581.376.33970128.60940-0.752502.300401.65970HepG2HNRNPK
CCDC106ENSG00000173581.3180.67950125.162300.529502.210201.59840HepG2HNRNPL
CCDC106ENSG00000173581.3257.8215086.705501.5721016.5537015.16690HepG2HNRNPU
CCDC106ENSG00000173581.3158.8010088.566700.842304.501203.58470HepG2ILF2
CCDC106ENSG00000173581.3463.94900270.744600.776904.521003.44820HepG2LARP4
CCDC106ENSG00000173581.3195.23470109.373200.835803.241302.01340HepG2LARP7
CCDC106ENSG00000173581.3219.54230136.966400.680602.894402.22430HepG2MAGOH
CCDC106ENSG00000173581.3508.88680137.733401.8854022.7033021.03940HepG2MATR3
CCDC106ENSG00000173581.3350.05890140.978201.3120010.889209.67310HepG2NCBP2
CCDC106ENSG00000173581.3227.73070136.244600.741004.228403.28590HepG2NOL12
CCDC106ENSG00000173581.3151.2171074.304801.025003.892202.19030HepG2NOLC1
CCDC106ENSG00000173581.3186.9667086.916901.105003.539502.29430HepG2NONO
CCDC106ENSG00000173581.3208.17990127.901800.702703.253802.60510HepG2PCBP1
CCDC106ENSG00000173581.3144.6872085.520100.758502.865101.61220HepG2PKM
CCDC106ENSG00000173581.3194.6078077.334301.331309.911008.56340HepG2PPIL4
CCDC106ENSG00000173581.3241.34510130.167700.890606.041205.29560HepG2PTBP1
CCDC106ENSG00000173581.3227.31280130.055600.805504.331303.60490HepG2PUF60
CCDC106ENSG00000173581.3366.12630138.057601.4070019.8081018.51550HepG2PUM1
CCDC106ENSG00000173581.3214.20320137.958100.634702.928302.23830HepG2PUM2
CCDC106ENSG00000173581.3182.28110269.62370-0.564802.293301.80960HepG2RBM22
CCDC106ENSG00000173581.3243.64330131.898000.885202.965201.93740HepG2RBM27
CCDC106ENSG00000173581.3277.74480144.845200.939106.788606.00620HepG2NELFE
CCDC106ENSG00000173581.3212.66100134.938000.656202.803802.18330HepG2RECQL
CCDC106ENSG00000173581.3120.12520214.84550-0.838803.998503.20180HepG2RPLP0
CCDC106ENSG00000173581.3199.95240100.649100.990205.149304.34070HepG2RPS19
CCDC106ENSG00000173581.3235.16360121.624600.951104.459703.45660HepG2RPS2
CCDC106ENSG00000173581.3118.2247056.761201.058503.633602.71750HepG2RPS3A
CCDC106ENSG00000173581.3168.7158077.214901.127506.840305.89470HepG2SAFB2
CCDC106ENSG00000173581.3232.63230135.480500.779904.679203.94140HepG2SF3B4
CCDC106ENSG00000173581.3179.4123090.045300.994505.909505.02450HepG2SMN1
CCDC106ENSG00000173581.3175.3121087.432001.003602.399101.51160HepG2SMNDC1
CCDC106ENSG00000173581.392.48830196.08220-1.084104.544003.53290HepG2SNRNP70
CCDC106ENSG00000173581.3213.46910141.429000.593802.895902.41510HepG2SRSF1
CCDC106ENSG00000173581.3297.71700128.408301.2131011.9143010.74180HepG2SRSF5
CCDC106ENSG00000173581.388.2168049.401800.836402.419401.40010HepG2STIP1
CCDC106ENSG00000173581.3327.01990146.037901.1629012.2202011.07180HepG2SUCLG1
CCDC106ENSG00000173581.3221.9116084.249501.397108.324807.54190HepG2TIAL1
CCDC106ENSG00000173581.3159.3511085.003800.906504.825104.12240HepG2TRIM56
CCDC106ENSG00000173581.3274.85040127.055301.113108.358106.70530HepG2TUFM
CCDC106ENSG00000173581.3256.04960134.483700.928902.117801.39160HepG2UBE2L3
CCDC106ENSG00000173581.3177.4042086.177701.041602.187401.30150HepG2UPF2
CCDC106ENSG00000173581.395.0189050.845400.902002.744601.65390HepG2XPO5
CCDC106ENSG00000173581.3218.7211092.687401.238505.878404.83290HepG2XRN2
CCDC106ENSG00000173581.3119.61080191.63090-0.680003.386402.65480HepG2ZC3H8
CCDC106ENSG00000173581.3162.43940243.17750-0.582103.458802.86640HepG2ZNF622
CCDC106ENSG00000173581.3601.47880369.846100.701508.336907.42430K562AGGF1
CCDC106ENSG00000173581.3548.36670406.419100.432102.972601.94400K562AKAP8
CCDC106ENSG00000173581.3575.13880384.845100.579501.964501.41130K562AKAP8L
CCDC106ENSG00000173581.3231.63990407.02010-0.813205.503404.72500K562AQR
CCDC106ENSG00000173581.3318.89710201.621500.661304.474703.23750K562BCLAF1
CCDC106ENSG00000173581.3374.93670248.008200.596203.681602.42840K562CCAR1
CCDC106ENSG00000173581.3288.94620152.960000.917502.789001.72700K562CSTF2
CCDC106ENSG00000173581.3559.37880455.666500.295701.931401.36840K562DDX47
CCDC106ENSG00000173581.3393.30250277.656700.502202.806501.46860K562DHX30
CCDC106ENSG00000173581.3534.78400414.099000.368902.711801.84770K562DKC1
CCDC106ENSG00000173581.3275.62830148.062800.896403.580302.53320K562EFTUD2
CCDC106ENSG00000173581.3138.8698084.866400.710402.374901.63520K562EIF3G
CCDC106ENSG00000173581.3322.15980207.822000.632304.636803.07380K562EIF4B
CCDC106ENSG00000173581.3314.79450201.442800.643904.284202.62770K562EWSR1
CCDC106ENSG00000173581.3475.42550297.727800.675103.889902.35020K562EXOSC5
CCDC106ENSG00000173581.36.6475051.38280-2.950407.506806.22330K562G3BP2
CCDC106ENSG00000173581.3615.48760473.207300.379202.647301.77320K562HNRNPU
CCDC106ENSG00000173581.3231.95830125.884200.881702.217801.39940K562MATR3
CCDC106ENSG00000173581.3621.08700457.518000.440903.648502.58090K562MBNL1
CCDC106ENSG00000173581.3307.70570146.169201.073804.488402.72430K562NONO
CCDC106ENSG00000173581.3462.02480274.351800.751803.178602.09730K562PABPN1
CCDC106ENSG00000173581.3467.13440321.244900.540103.637902.67820K562PPIG
CCDC106ENSG00000173581.3272.43050122.612301.151704.930304.06750K562PTBP1
CCDC106ENSG00000173581.3448.11570653.08200-0.543403.905802.94120K562PUF60
CCDC106ENSG00000173581.3523.77370381.635800.456602.933202.37680K562PUS1
CCDC106ENSG00000173581.3463.25610371.867200.316901.840401.33900K562RBM15
CCDC106ENSG00000173581.3307.27560204.248200.589103.033001.94830K562SRFBP1
CCDC106ENSG00000173581.3284.18370143.988100.980804.724402.53470K562SRP68
CCDC106ENSG00000173581.3307.48530120.230801.354603.620702.81920K562SRSF1
CCDC106ENSG00000173581.3267.56660148.004900.854202.276501.33920K562SRSF4
CCDC106ENSG00000173581.3289.00870121.617101.248703.457302.66230K562TARDBP
CCDC106ENSG00000173581.3234.79440117.330301.000702.807501.98310K562TIA1
CCDC106ENSG00000173581.3827.64950666.247700.312902.545301.33370K562TROVE2
CCDC106ENSG00000173581.318.2930051.49650-1.493203.504202.60130K562U2AF2
CCDC106ENSG00000173581.3292.01360147.566800.984604.570803.22950K562UCHL5
CCDC106ENSG00000173581.3334.03050150.381101.151304.452802.78290K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC106 is not available on ENCORE database.





1 RBPs can affect the splicing of CCDC106 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCDC106ENSG00000173581.3chr19+561605705616067556160123561604435616077356160950-0.092000.001160.08987excludedHepG2SRSF7

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC106 is not avaliable on ENCORE database.