LYRM1

General Information

Gene Name       : LYRM1
Gene ID             : ENSG00000102897.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LYRM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LYRM1ENSG00000102897.928.2729.8229.05ENCSR000AEF
HepG2LYRM1ENSG00000102897.961.6677.2769.47ENCSR985KAT
K562LYRM1ENSG00000102897.926.6827.0126.84ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LYRM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LYRM1 RNA is bound by 9 proteins.  







eCLIP assay for LYRM1 is not avaliable on ENCORE database.





9 proteins are bound to LYRM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr162093559720935653+3'-UTR3.522415.33418K562FAM120A
chr162093531820935405+3'-UTR,CDS,intron-Proximal3.515505.35682HepG2GRWD1
chr162091219420912359+5'-UTR,intron-Distal,intron-Proximal3.6086910.52006HepG2PRPF4
chr162091196620912034+5'-UTR,intron-Distal4.159083.57264HepG2GTF2F1
chr162091123320911325+5'-UTR3.578046.05537HepG2DDX3X
chr162091196720912035+5'-UTR,intron-Distal3.093634.90123HepG2CSTF2T
chr162091227720912357+intron-Distal,intron-Proximal3.252423.86086HepG2HNRNPU
chr162091280320912896+intron-Distal3.160703.69754HepG2TAF15
chr162091225120912341+intron-Distal,intron-Proximal3.547899.38189HepG2GTF2F1
chr162091236520912398+intron-Distal3.898413.19526HepG2CSTF2T
chr162091974520919803+intron-Distal3.438874.49514HepG2XPO5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LYRM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LYRM1 is not available on ENCORE database.

  • 65 RBPs can affect the levels of LYRM1.  








The Knockdown/knockout RNA-Seq assay for LYRM1 is not available on ENCORE database.





65 RBPs can affect the gene expression of LYRM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LYRM1ENSG00000102897.51824.107201403.547000.378002.381001.50640HepG2ABCF1
LYRM1ENSG00000102897.51285.010701668.87160-0.377102.344001.85000HepG2AKAP1
LYRM1ENSG00000102897.51103.923401499.32860-0.441706.822405.82070HepG2AUH
LYRM1ENSG00000102897.5924.901301340.52320-0.535407.024805.86830HepG2CALR
LYRM1ENSG00000102897.52275.688701311.905900.7945011.375009.91060HepG2CIRBP
LYRM1ENSG00000102897.51075.804901370.25900-0.349002.567301.90130HepG2CPSF6
LYRM1ENSG00000102897.51163.062601350.10320-0.215101.955801.39740HepG2CELF1
LYRM1ENSG00000102897.51031.16850796.551900.372302.741602.06630HepG2DDX21
LYRM1ENSG00000102897.51188.51600778.936600.609507.459605.97060HepG2DDX24
LYRM1ENSG00000102897.52018.255701598.660600.336102.333601.75390HepG2DDX3X
LYRM1ENSG00000102897.51036.925501373.26410-0.405302.571301.97530HepG2DDX6
LYRM1ENSG00000102897.51176.92440947.348600.313003.281002.55280HepG2DKC1
LYRM1ENSG00000102897.5560.590801320.17030-1.2357019.7892018.30410HepG2EIF2S1
LYRM1ENSG00000102897.51069.44570764.762300.483703.738602.69680HepG2EIF3D
LYRM1ENSG00000102897.51095.17860751.847300.542606.009304.50610HepG2EIF3G
LYRM1ENSG00000102897.51569.709401215.759300.368502.901101.78300HepG2ESF1
LYRM1ENSG00000102897.52062.405801721.394700.260703.303602.65550HepG2ETF1
LYRM1ENSG00000102897.5583.77070967.59130-0.729009.439707.92110HepG2EWSR1
LYRM1ENSG00000102897.51054.580401417.22330-0.426402.931202.13880HepG2FIP1L1
LYRM1ENSG00000102897.5664.262701032.40320-0.636207.304506.06560HepG2FUBP3
LYRM1ENSG00000102897.51146.472501471.99500-0.360602.540001.87600HepG2FXR1
LYRM1ENSG00000102897.51053.358301365.50520-0.374402.436101.80980HepG2G3BP1
LYRM1ENSG00000102897.51192.737101398.67490-0.229802.181901.53950HepG2HNRNPF
LYRM1ENSG00000102897.51041.505901322.59080-0.344705.276204.37060HepG2HNRNPL
LYRM1ENSG00000102897.5800.957101069.77830-0.417505.528904.69450HepG2HNRNPU
LYRM1ENSG00000102897.51748.067401388.011200.332602.339401.71300HepG2IGF2BP2
LYRM1ENSG00000102897.5704.075301472.50880-1.0645015.7687014.26430HepG2MAGOH
LYRM1ENSG00000102897.51140.039701480.75460-0.377202.396301.80680HepG2MATR3
LYRM1ENSG00000102897.51137.203801515.63810-0.414402.926002.27660HepG2NCBP2
LYRM1ENSG00000102897.5866.364301439.65750-0.7327013.7122012.07300HepG2NOL12
LYRM1ENSG00000102897.51025.475001349.79080-0.396402.812302.08530HepG2PABPC4
LYRM1ENSG00000102897.51017.502901459.23970-0.520208.105907.15720HepG2PCBP1
LYRM1ENSG00000102897.5704.06630998.83720-0.504502.798401.75250HepG2PCBP2
LYRM1ENSG00000102897.51565.292601050.020700.575903.624202.23920HepG2PRPF6
LYRM1ENSG00000102897.5626.410001484.77980-1.2451040.3411038.76310HepG2PTBP1
LYRM1ENSG00000102897.51049.231401457.72010-0.474406.097605.11410HepG2PUM2
LYRM1ENSG00000102897.5529.143901008.57950-0.9306021.7200020.29450HepG2PUS1
LYRM1ENSG00000102897.51007.270901608.16230-0.6750012.0889010.91760HepG2QKI
LYRM1ENSG00000102897.52731.912001438.774700.9250028.6396027.32260HepG2RBM22
LYRM1ENSG00000102897.51026.684701459.46940-0.507506.088605.12440HepG2RBM25
LYRM1ENSG00000102897.51131.35890852.952700.407402.944201.84820HepG2RCC2
LYRM1ENSG00000102897.51421.349701652.45990-0.217402.218801.72350HepG2NELFE
LYRM1ENSG00000102897.51090.669001538.96470-0.496708.528307.53550HepG2RECQL
LYRM1ENSG00000102897.51224.92330968.794000.338302.691901.90190HepG2RPS2
LYRM1ENSG00000102897.51847.116901467.186200.332102.674201.98070HepG2SF3B1
LYRM1ENSG00000102897.51033.763401545.93920-0.5806011.1065010.04280HepG2SF3B4
LYRM1ENSG00000102897.51118.862001312.70780-0.230502.430101.90580HepG2SRSF9
LYRM1ENSG00000102897.52266.477401410.956200.6837012.4423011.50800HepG2SSB
LYRM1ENSG00000102897.51145.171001543.09670-0.430307.935406.97190HepG2SUCLG1
LYRM1ENSG00000102897.5961.210601450.25220-0.593409.999309.03940HepG2TAF15
LYRM1ENSG00000102897.51022.477901332.69450-0.382303.830102.85380HepG2TIA1
LYRM1ENSG00000102897.5405.647601039.46810-1.3575031.2479029.89620HepG2TIAL1
LYRM1ENSG00000102897.5760.150701048.78320-0.464406.647105.83990HepG2TRIM56
LYRM1ENSG00000102897.51833.077201256.750200.5445011.4392010.35340HepG2UTP3
LYRM1ENSG00000102897.51486.866101060.034300.488102.934101.84060HepG2XRCC6
LYRM1ENSG00000102897.51969.700901431.631500.4602010.744009.84180HepG2ZNF622
LYRM1ENSG00000102897.5752.47850918.28820-0.287301.909701.36270K562AKAP8L
LYRM1ENSG00000102897.51201.35060988.262600.281602.381701.57750K562DKC1
LYRM1ENSG00000102897.5175.56820286.95810-0.708803.915002.81350K562EFTUD2
LYRM1ENSG00000102897.5724.00700420.145800.7850010.945709.66030K562EIF2S2
LYRM1ENSG00000102897.5211.26670307.27630-0.540502.335001.39400K562EIF3D
LYRM1ENSG00000102897.5267.32530393.10330-0.556304.119803.15820K562EIF3G
LYRM1ENSG00000102897.5535.56940762.60290-0.509904.830903.60710K562EIF4G2
LYRM1ENSG00000102897.5538.89420377.924200.511803.047302.06410K562HNRNPM
LYRM1ENSG00000102897.51434.84460622.869601.2038022.6384020.55650K562HSPD1
LYRM1ENSG00000102897.5401.81930659.65120-0.715203.017001.97380K562PABPN1
LYRM1ENSG00000102897.5237.59750379.65760-0.676204.475903.22470K562PCBP2
LYRM1ENSG00000102897.5671.76260521.595800.364902.263501.52250K562PPIG
LYRM1ENSG00000102897.5704.84670910.82540-0.369902.620802.08890K562PUS1
LYRM1ENSG00000102897.5581.78590323.734000.845605.061903.04730K562RAVER1
LYRM1ENSG00000102897.5217.92850326.25570-0.582103.007402.02850K562TIAL1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LYRM1 is not available on ENCORE database.





44 RBPs can affect the splicing of LYRM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELYRM1ENSG00000102897.5chr16+2092250420922586209138072091403920926877209270360.344000.001970.03601includedK562SRSF1
SELYRM1ENSG00000102897.5chr16+209268772092703620913807209140392093144320931536-0.186000.000300.06332excludedK562FTO
SELYRM1ENSG00000102897.5chr16+209116192091185720911223209113262092687720927036-0.105000.000000.00380excludedHepG2NKRF
SELYRM1ENSG00000102897.5chr16+2092250420922586209138072091403920926877209270360.226000.000430.03171includedHepG2RBM22
SELYRM1ENSG00000102897.5chr16+2092250420922586209138072091403920926877209270360.387000.000040.00132includedHepG2U2AF1
SELYRM1ENSG00000102897.5chr16+209268772092703620913807209140392093144320931566-0.091000.003110.07378excludedK562AKAP8L
SELYRM1ENSG00000102897.5chr16+209116192091185720911223209113262092687720927036-0.126000.000020.00585excludedHepG2HNRNPM
SELYRM1ENSG00000102897.5chr16+2092687720927036209138072091403920931443209315360.191000.000010.00522includedHepG2ILF3
SELYRM1ENSG00000102897.5chr16+209116192091185720911223209113262092687720927036-0.235000.000100.09332excludedHepG2TROVE2
SELYRM1ENSG00000102897.5chr16+209138072091403920911812209118572092687720927036-0.125000.000240.05606excludedHepG2DKC1
SELYRM1ENSG00000102897.5chr16+2091380720914039209118122091185720926877209270360.314000.000000.00000includedHepG2HNRNPK
SELYRM1ENSG00000102897.5chr16+209268772092703620913807209140392093144320931536-0.128000.001180.03085excludedHepG2HNRNPK
SELYRM1ENSG00000102897.5chr16+2091161920911857209112232091132620926877209270360.098000.000060.01094includedHepG2DDX59
SELYRM1ENSG00000102897.5chr16+209116192091185720911223209113262092687720927036-0.116000.000000.00012excludedHepG2TBRG4
SELYRM1ENSG00000102897.5chr16+2092250420922586209117712091185720926877209270360.071000.000020.00287includedHepG2AKAP1
SELYRM1ENSG00000102897.5chr16+209138072091403920911987209122112092687720927036-0.172000.000200.01742excludedHepG2AKAP1
SELYRM1ENSG00000102897.5chr16+209314432093153620926877209270362093532120935438-0.072000.001290.01510excludedK562AQR
SELYRM1ENSG00000102897.5chr16+2092250420922586209117712091185720926877209270360.061000.000030.00455includedHepG2DDX3X
SELYRM1ENSG00000102897.5chr16+209116192091185720911223209113262092687720927036-0.183000.000110.01433excludedHepG2DDX3X
SELYRM1ENSG00000102897.5chr16+209268772092703620911556209118572093144320931566-0.118000.000000.00003excludedK562PUS1
SELYRM1ENSG00000102897.5chr16+209116192091185720911223209113262092687720927036-0.132000.000230.01922excludedHepG2NCBP2
SELYRM1ENSG00000102897.5chr16+209138072091403920911987209122112092687720927036-0.332000.000020.00821excludedHepG2EFTUD2
SELYRM1ENSG00000102897.5chr16+2091380720914039209118122091185720926877209270360.203000.000000.00001includedHepG2SFPQ
SELYRM1ENSG00000102897.5chr16+2092687720927036209138072091403920931443209315360.149000.000170.03351includedHepG2HNRNPA1
SELYRM1ENSG00000102897.5chr16+209268772092703620911556209118572093144320931536-0.080000.000300.02524excludedHepG2FTO
SELYRM1ENSG00000102897.5chr16+2092250420922586209138072091403920926877209270360.271000.001190.04859includedHepG2MATR3
SELYRM1ENSG00000102897.5chr16+209116192091185720911223209113262092687720927036-0.263000.000000.00000excludedHepG2MATR3
SELYRM1ENSG00000102897.5chr16+2091161920911839209112232091132620926877209270360.138000.000510.05580includedHepG2LARP4
SELYRM1ENSG00000102897.5chr16+209116192091185720911223209113262092687720927036-0.073000.000140.08869excludedHepG2PPIG
SELYRM1ENSG00000102897.5chr16+209138072091403920911812209118572092687720927036-0.084000.000050.00225excludedHepG2SRSF1
SELYRM1ENSG00000102897.5chr16+209138072091403920911812209118572092687720927036-0.133000.000000.00001excludedHepG2SSB
SELYRM1ENSG00000102897.5chr16+2092687720927036209138072091403920931443209315360.108000.000590.04616includedHepG2IGF2BP3
SELYRM1ENSG00000102897.5chr16+209268772092703620911619209118572093144320931536-0.138000.000400.03352excludedHepG2TIAL1
SELYRM1ENSG00000102897.5chr16+2091161920911857209112232091132620926877209270360.109000.000590.05660includedHepG2SUPV3L1
SELYRM1ENSG00000102897.5chr16+209116192091185720911223209113262092687720927036-0.273000.000000.00005excludedHepG2PCBP1
SELYRM1ENSG00000102897.5chr16+2091380720914039209118122091185720926877209270360.111000.000600.06192includedHepG2TAF15
SELYRM1ENSG00000102897.5chr16+209225042092258620913807209140392092687720927036-0.264000.000740.07237excludedHepG2TAF15
SELYRM1ENSG00000102897.5chr16+209138072091403920911987209122112092687720927036-0.243000.001870.06078excludedK562HNRNPU
SELYRM1ENSG00000102897.5chr16+209268772092703620911556209118572093144320931566-0.071000.000290.01030excludedK562RBM15
SELYRM1ENSG00000102897.5chr16+2091380720914039209119872091221120926877209270360.226000.000370.01256includedK562AGGF1
SELYRM1ENSG00000102897.5chr16+209268772092703620911556209118572093144320931566-0.066000.000510.01625excludedK562AGGF1
SELYRM1ENSG00000102897.5chr16+2091380720914039209119872091221120926877209270360.356000.000700.03430includedK562HNRNPK
SELYRM1ENSG00000102897.5chr16+209268772092703620913807209140392093144320931536-0.209000.001050.04662excludedK562HNRNPK
SELYRM1ENSG00000102897.5chr16+209138072091403920911987209122112092687720927036-0.303000.000270.01541excludedHepG2HNRNPU
SELYRM1ENSG00000102897.5chr16+2092687720927036209138072091403920931443209315660.140000.000160.00866includedHepG2HNRNPC
SELYRM1ENSG00000102897.5chr16+209138072091403920911812209118572092687720927036-0.103000.000780.03170excludedHepG2HNRNPC
SELYRM1ENSG00000102897.5chr16+209225042092258620913807209140392092687720927036-0.275000.000580.04097excludedHepG2SRSF9
SELYRM1ENSG00000102897.5chr16+2091161920911857209112232091132620926877209270360.129000.000000.00187includedHepG2PRPF4
SELYRM1ENSG00000102897.5chr16+209138072091403920911987209122112092687720927036-0.453000.000000.00011excludedK562HNRNPC
MXELYRM1ENSG00000102897.5chr16+2091380720914039209225042092258620911771209118572092687720927036-0.239000.000090.012632includedHepG2RBM22
MXELYRM1ENSG00000102897.5chr16+20926877209270362093144320931536209225042092258620935321209363280.225000.000000.000071includedHepG2U2AF1
MXELYRM1ENSG00000102897.5chr16+2092687720927036209314432093153620912120209122112093532120935438-0.132000.002690.045652includedHepG2U2AF1
MXELYRM1ENSG00000102897.5chr16+2091380720914039209225042092258620911771209118572092687720927036-0.428000.000000.000002includedHepG2U2AF1
MXELYRM1ENSG00000102897.5chr16+20926877209270362093144320931536209121202091221120935321209354380.134000.000410.054991includedHepG2FUS
MXELYRM1ENSG00000102897.5chr16+2091380720914039209225042092258620911771209118572092687720927036-0.279000.001170.063592includedHepG2IGF2BP3
MXELYRM1ENSG00000102897.5chr16+2092687720927036209314432093153620912120209122112093532120935438-0.249000.000000.000362includedK562RBM15
MXELYRM1ENSG00000102897.5chr16+2092687720927036209314432093156620911556209118572093532120935438-0.105000.000510.012152includedK562PUS1
MXELYRM1ENSG00000102897.5chr16+20913807209140392092250420922586209117712091185720926877209270360.196000.000850.032901includedK562AGGF1
MXELYRM1ENSG00000102897.5chr16+2091380720914039209225042092258620911771209118572092687720927036-0.495000.000050.001542includedK562SRSF1
MXELYRM1ENSG00000102897.5chr16+20913807209140392092250420922586209117712091185720926877209270360.269000.000080.007011includedHepG2SRSF9
MXELYRM1ENSG00000102897.5chr16+20926829209270362093144320931536209115562091185720935321209363260.095000.000570.005571includedK562AQR
MXELYRM1ENSG00000102897.5chr16+20913807209140392092250420922618209117712091185720926877209270360.091000.001910.024641includedHepG2SFPQ
MXELYRM1ENSG00000102897.5chr16+20926877209270362093144320931536209121202091221120935321209354380.121000.000560.016621includedHepG2DDX55
MXELYRM1ENSG00000102897.5chr16+20926877209270362093144320931536209112232091132620935321209355850.093000.000060.003511includedHepG2PCBP1
MXELYRM1ENSG00000102897.5chr16+20913807209140392092250420922618209117712091185720926877209270360.103000.002880.072981includedHepG2RBFOX2
MXELYRM1ENSG00000102897.5chr16+20926877209270362093144320931536209115562091185720935321209363260.254000.001550.061811includedK562SAFB
MXELYRM1ENSG00000102897.5chr16+20926877209270362093144320931536209112232091132620935321209355850.160000.000690.061491includedHepG2HNRNPM
MXELYRM1ENSG00000102897.5chr16+2091380720914039209225042092258620911771209118572092687720927036-0.270000.000170.027202includedHepG2HNRNPM
MXELYRM1ENSG00000102897.5chr16+20926877209270362093144320931536209121202091221120935321209354380.308000.000010.000541includedK562HNRNPC
MXELYRM1ENSG00000102897.5chr16+20926877209270362093144320931536209121202091221120935321209354380.193000.000000.000081includedHepG2AKAP1
MXELYRM1ENSG00000102897.5chr16+2091380720914039209225042092258620911771209118572092687720927036-0.236000.001300.072162includedHepG2AKAP1
MXELYRM1ENSG00000102897.5chr16+20926877209270362093144320931536209121202091221120935321209354380.128000.000960.067561includedHepG2QKI
MXELYRM1ENSG00000102897.5chr16+20926877209270362093144320931536209121202091221120935321209354380.170000.000510.018821includedHepG2HNRNPU
MXELYRM1ENSG00000102897.5chr16+20926877209270362093144320931536209112232091132620935321209355850.088000.000020.001921includedHepG2DDX3X
MXELYRM1ENSG00000102897.5chr16+20926877209270362093144320931536209121202091221120935321209354380.094000.002300.076511includedHepG2HNRNPL
MXELYRM1ENSG00000102897.5chr16+2092687720927036209314432093153620912120209122112093532120935438-0.140000.000000.000012includedHepG2SSB
MXELYRM1ENSG00000102897.5chr16+20926877209270362093144320931536209112232091132620935321209355850.077000.000080.004801includedHepG2NCBP2
MXELYRM1ENSG00000102897.5chr16+20926877209270362093144320931536209115562091185720935321209363260.271000.000280.007211includedK562SF3B4
MXELYRM1ENSG00000102897.5chr16+2092687720927036209314432093153620922504209225862093532120936328-0.071000.000200.023942includedHepG2PRPF8
MXELYRM1ENSG00000102897.5chr16+20913807209140392092250420922586209117712091185720926877209270360.189000.001450.053521includedK562AKAP8L
MXELYRM1ENSG00000102897.5chr16+20913807209140392093144320931536209119872091221120935321209357030.242000.000700.018681includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LYRM1 is not avaliable on ENCORE database.