LAMA5

General Information

Gene Name : LAMA5
Gene ID : ENSG00000130702.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LAMA5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LAMA5	ENSG00000130702.15	0.00	0.42	0.21	ENCSR000AEF
HepG2	LAMA5	ENSG00000130702.15	232.34	18.82	125.58	ENCSR985KAT
K562	LAMA5	ENSG00000130702.15	14.43	5.24	9.84	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LAMA5 is not avaliable on ENCORE database.

Proteins bound to RNA

LAMA5 RNA is bound by 71 proteins.

CanvasJS.com

eCLIP assay for LAMA5 is not avaliable on ENCORE database.

71 proteins are bound to LAMA5 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	60900306	60900373	-	CDS,intron-Distal,intron-Proximal	3.84381	400.00000	HepG2	PRPF8
chr20	60907398	60907436	-	CDS,intron-Distal,intron-Proximal	5.37623	400.00000	HepG2	PRPF8
chr20	60900231	60900341	-	intron-Distal,intron-Proximal	5.77200	400.00000	HepG2	PCBP2
chr20	60900027	60900092	-	intron-Distal	4.31477	400.00000	HepG2	DDX59
chr20	60900122	60900206	-	intron-Distal,intron-Proximal	5.05399	400.00000	HepG2	PCBP2
chr20	60899978	60900065	-	intron-Distal,intron-Proximal	4.43492	400.00000	HepG2	PCBP2
chr20	60924794	60924861	-	intron-Distal	6.70851	90.85419	HepG2	HNRNPK
chr20	60900373	60900379	-	CDS,intron-Distal	3.72968	85.09201	HepG2	PRPF8
chr20	60942323	60942367	-	5'-UTR,intron-Distal,intron-Proximal	4.58700	81.22676	HepG2	DDX3X
chr20	60901686	60901776	-	CDS,intron-Distal,intron-Proximal	4.00652	80.55380	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 1,040 entries

eCLIP assay for LAMA5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LAMA5 is not available on ENCORE database.
119 RBPs can affect the levels of LAMA5.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LAMA5 is not available on ENCORE database.

119 RBPs can affect the gene expression of LAMA5 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LAMA5	ENSG00000130702.9	13873.09760	2990.49100	2.21370	264.28570	260.20100	HepG2	SRSF5
LAMA5	ENSG00000130702.9	7538.79020	3215.21470	1.22930	116.31710	113.77760	HepG2	PUM1
LAMA5	ENSG00000130702.9	13643.26430	4744.18510	1.52390	114.83900	112.71620	HepG2	NELFE
LAMA5	ENSG00000130702.9	11065.57270	3401.07650	1.70190	98.82610	96.18910	HepG2	SUCLG1
LAMA5	ENSG00000130702.9	8780.04830	2904.08380	1.59600	61.16670	58.84060	HepG2	SLBP
LAMA5	ENSG00000130702.9	1015.30000	2533.85900	-1.31940	49.05930	46.69300	K562	FXR1
LAMA5	ENSG00000130702.9	1161.47120	3242.90460	-1.48130	40.38530	38.36140	K562	AQR
LAMA5	ENSG00000130702.9	4105.62360	2393.63020	0.77830	32.20910	30.41870	HepG2	SMN1
LAMA5	ENSG00000130702.9	2084.57880	693.82290	1.58700	29.20070	26.34820	K562	TIA1
LAMA5	ENSG00000130702.9	3675.91510	2354.34630	0.64270	27.70390	25.69440	HepG2	ILF2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 142 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LAMA5 is not available on ENCORE database.

17 RBPs can affect the splicing of LAMA5 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LAMA5	ENSG00000130702.9	chr20	-	60902288	60902462	60901920	60902022	60902584	60902725	-0.21500	0.00000	0.00000	excluded	HepG2	U2AF1
SE	LAMA5	ENSG00000130702.9	chr20	-	60926043	60926313	60921968	60922084	60926759	60926857	0.32300	0.00000	0.00048	included	K562	FXR1
A3SS	LAMA5	ENSG00000130702.9	chr20	-	60890151	60890334	60890151	60890263	60891003	60891097	0.10000	0.00000	0.00005	longer	K562	AGGF1
A3SS	LAMA5	ENSG00000130702.9	chr20	-	60899496	60899666	60899496	60899610	60900371	60900602	0.18800	0.00000	0.00011	longer	HepG2	SF3A3
A3SS	LAMA5	ENSG00000130702.9	chr20	-	60899496	60899714	60899496	60899610	60900371	60900602	0.19900	0.00000	0.00121	longer	HepG2	HNRNPK
A3SS	LAMA5	ENSG00000130702.9	chr20	-	60890151	60890366	60890151	60890263	60891003	60891097	0.05500	0.00000	0.00000	longer	HepG2	U2AF1
A3SS	LAMA5	ENSG00000130702.9	chr20	-	60899496	60899666	60899496	60899610	60900371	60900602	0.29300	0.00000	0.00035	longer	HepG2	U2AF1
A3SS	LAMA5	ENSG00000130702.9	chr20	-	60890151	60890334	60890151	60890263	60891003	60891097	0.10100	0.00000	0.00005	longer	K562	RBM15
A3SS	LAMA5	ENSG00000130702.9	chr20	-	60899496	60899666	60899496	60899610	60900371	60900602	0.25500	0.00000	0.00013	longer	HepG2	SF3B4
A3SS	LAMA5	ENSG00000130702.9	chr20	-	60905798	60906000	60905798	60905969	60906087	60906185	-0.08900	0.00001	0.00092	shorter	HepG2	U2AF1

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LAMA5

General Information

Functions

Localization

Domains (AlphaFold: LAMA5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LAMA5 is not avaliable on ENCORE database.

71 proteins are bound to LAMA5 RNA:

eCLIP assay for LAMA5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LAMA5 is not available on ENCORE database.

119 RBPs can affect the gene expression of LAMA5 :

The Knockdown/knockout RNA-Seq assay for LAMA5 is not available on ENCORE database.

17 RBPs can affect the splicing of LAMA5 :

The Knockdown/knockout RNA-Seq assay for LAMA5 is not avaliable on ENCORE database.