SCAMP5

General Information

Gene Name       : SCAMP5
Gene ID             : ENSG00000198794.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCAMP5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCAMP5ENSG00000198794.1116.5820.6518.61ENCSR000AEF
HepG2SCAMP5ENSG00000198794.1131.3329.4230.38ENCSR985KAT
K562SCAMP5ENSG00000198794.110.110.060.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCAMP5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCAMP5 RNA is bound by 7 proteins.  







eCLIP assay for SCAMP5 is not avaliable on ENCORE database.





7 proteins are bound to SCAMP5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr157531167575311732+3'-UTR4.128766.36332HepG2UPF1
chr157531334375313424+3'-UTR3.663524.41670HepG2AKAP1
chr157531334975313419+3'-UTR3.114864.40253HepG2UPF1
chr157531200075312055+3'-UTR3.767535.17218HepG2UPF1
chr157531322775313295+3'-UTR3.778377.95735HepG2PCBP2
chr157531185075311981+3'-UTR3.9801114.66322HepG2PCBP2
chr157531222075312315+3'-UTR4.273148.08110HepG2UPF1
chr157531207175312118+3'-UTR4.336284.68979HepG2UPF1
chr157531363875313777+3'-UTR5.1909910.38790HepG2DDX55
chr157531329575313407+3'-UTR5.2209726.54975HepG2PCBP2
chr157531220175312277+3'-UTR3.068404.86917HepG2LIN28B
chr157531161875311675+3'-UTR5.041747.45692HepG2UPF1
chr157531197675312058+3'-UTR4.128326.62084HepG2AKAP1
chr157531224175312341+3'-UTR3.765158.14483HepG2PCBP2
chr157531187075311924+3'-UTR3.360664.17280HepG2AKAP1
chr157531283175312898+3'-UTR4.302724.68979HepG2UPF1
chr157528951275289578+5'-UTR,intron-Distal,intron-Proximal5.5361010.66887HepG2PCBP2
chr157528792075288016+5'-UTR,intron-Distal,intron-Proximal3.956519.88902HepG2DDX3X
chr157530520375305265+intron-Distal,intron-Proximal5.3990812.96345HepG2EFTUD2
chr157530536275305406+intron-Distal4.648635.36996HepG2PCBP2
chr157530516075305203+intron-Proximal4.106606.49249HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCAMP5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCAMP5 is not available on ENCORE database.

  • 59 RBPs can affect the levels of SCAMP5.  








The Knockdown/knockout RNA-Seq assay for SCAMP5 is not available on ENCORE database.





59 RBPs can affect the gene expression of SCAMP5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCAMP5ENSG00000198794.7640.83300862.03970-0.427803.227902.07790HepG2AATF
SCAMP5ENSG00000198794.71341.642401088.698500.301303.681702.99910HepG2ACO1
SCAMP5ENSG00000198794.71085.734301661.27770-0.613605.338204.62850HepG2AKAP1
SCAMP5ENSG00000198794.71927.723301469.419100.391606.233905.26950HepG2AUH
SCAMP5ENSG00000198794.71589.444101121.931700.502405.503603.80550HepG2BUD13
SCAMP5ENSG00000198794.71836.010001135.847900.692706.136404.65150HepG2CCAR1
SCAMP5ENSG00000198794.71660.287001305.920200.346302.496001.75680HepG2CIRBP
SCAMP5ENSG00000198794.71831.420201088.483700.7505023.2538021.74820HepG2CKAP4
SCAMP5ENSG00000198794.7371.95920625.86720-0.750704.341203.37900HepG2CNOT7
SCAMP5ENSG00000198794.71101.87390883.490900.318602.948701.89780HepG2YBX3
SCAMP5ENSG00000198794.7263.78980627.34820-1.2499016.7646014.50340HepG2CSTF2
SCAMP5ENSG00000198794.71504.351901006.900200.5791013.0859011.55760HepG2DDX19B
SCAMP5ENSG00000198794.71254.13480950.774700.399403.432302.68340HepG2DDX21
SCAMP5ENSG00000198794.71059.58610859.860600.301203.503902.78470HepG2DNAJC2
SCAMP5ENSG00000198794.72416.328001452.196200.734508.159207.06530HepG2EIF4A3
SCAMP5ENSG00000198794.72145.861201414.019200.601704.558203.68710HepG2EIF4B
SCAMP5ENSG00000198794.72130.102501286.873600.7270010.718209.17420HepG2EIF4G2
SCAMP5ENSG00000198794.71425.24810906.192200.653208.811006.99240HepG2FASTKD2
SCAMP5ENSG00000198794.7954.148001359.25780-0.510504.137603.33350HepG2G3BP1
SCAMP5ENSG00000198794.71033.25950620.654000.735208.283406.77710HepG2GEMIN5
SCAMP5ENSG00000198794.71181.38850857.788800.461703.307702.61280HepG2GPKOW
SCAMP5ENSG00000198794.7938.04370579.389100.695004.744503.29720HepG2GRSF1
SCAMP5ENSG00000198794.71228.43850875.834600.488004.736103.92120HepG2HNRNPA1
SCAMP5ENSG00000198794.71354.22050974.203300.475104.586003.70810HepG2HNRNPC
SCAMP5ENSG00000198794.71465.706901143.725500.357804.221403.35590HepG2HNRNPF
SCAMP5ENSG00000198794.7818.769901376.57100-0.749509.481408.25120HepG2HNRNPK
SCAMP5ENSG00000198794.71507.260401126.231900.420302.872002.13430HepG2IGF2BP1
SCAMP5ENSG00000198794.71970.287701381.625400.511905.027004.14140HepG2IGF2BP2
SCAMP5ENSG00000198794.71944.728501199.966500.696506.362605.09040HepG2LARP4
SCAMP5ENSG00000198794.7770.180801008.57310-0.389003.121201.83320HepG2LIN28B
SCAMP5ENSG00000198794.71082.55360729.553000.569302.998401.90220HepG2METAP2
SCAMP5ENSG00000198794.71500.862101223.739800.294402.259901.52540HepG2MSI2
SCAMP5ENSG00000198794.7748.61570957.92020-0.355703.685002.72240HepG2PARN
SCAMP5ENSG00000198794.72040.058501069.588600.931508.689406.63990HepG2PRPF6
SCAMP5ENSG00000198794.71344.286201108.913200.277603.229602.57650HepG2PUS1
SCAMP5ENSG00000198794.7697.67090981.68400-0.492702.164001.53460HepG2RAVER1
SCAMP5ENSG00000198794.72031.467801410.069900.526707.284406.53630HepG2RBM22
SCAMP5ENSG00000198794.7704.814101158.51140-0.717008.251306.53450HepG2RBM27
SCAMP5ENSG00000198794.71225.610301500.13610-0.291602.265701.70120HepG2RECQL
SCAMP5ENSG00000198794.7969.44660678.276300.515205.077204.27340HepG2RPS19
SCAMP5ENSG00000198794.7821.382901068.41390-0.379302.917202.09770HepG2RPS2
SCAMP5ENSG00000198794.7870.129901090.66250-0.325902.367101.37950HepG2RPS5
SCAMP5ENSG00000198794.7706.31650861.83580-0.287102.657602.02310HepG2SAFB2
SCAMP5ENSG00000198794.7987.18530523.434100.915202.636001.32410HepG2SF1
SCAMP5ENSG00000198794.71311.680401572.98680-0.262101.836201.42850HepG2SRSF1
SCAMP5ENSG00000198794.7838.677701279.64080-0.609606.173905.40700HepG2SRSF9
SCAMP5ENSG00000198794.71617.221401382.811400.225802.446401.95840HepG2SSB
SCAMP5ENSG00000198794.71346.314701009.923900.414702.641401.42820HepG2STAU1
SCAMP5ENSG00000198794.71247.226301447.28730-0.214602.097501.54180HepG2SUCLG1
SCAMP5ENSG00000198794.71285.834901020.993100.332602.881701.92100HepG2SUPT6H
SCAMP5ENSG00000198794.7608.67090994.10560-0.707706.244805.28870HepG2SUPV3L1
SCAMP5ENSG00000198794.71081.202501413.64370-0.386803.065402.47940HepG2TAF15
SCAMP5ENSG00000198794.71217.57300797.941200.609606.447505.40250HepG2TARDBP
SCAMP5ENSG00000198794.71122.03460940.365100.254701.974301.53690HepG2TIAL1
SCAMP5ENSG00000198794.71035.77080544.089500.928702.720701.74060HepG2U2AF2
SCAMP5ENSG00000198794.72454.098101230.270600.9961039.1877037.30550HepG2UTP3
SCAMP5ENSG00000198794.71013.050101176.21370-0.215401.995701.41110HepG2ZC3H8
SCAMP5ENSG00000198794.7929.836401401.46900-0.5919013.5614012.57970HepG2ZNF622
SCAMP5ENSG00000198794.714.681901.507803.283402.406701.55670K562EFTUD2
SCAMP5ENSG00000198794.723.914700.0000099999.999905.588704.51080K562GRSF1
SCAMP5ENSG00000198794.720.662001.491003.792502.543101.76110K562RPS19
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCAMP5 is not available on ENCORE database.





19 RBPs can affect the splicing of SCAMP5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.207000.000180.02237includedHepG2G3BP1
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.466000.000000.00000includedHepG2RBM22
SESCAMP5ENSG00000198794.7chr15+753102107531031275305017753051467531075875310808-0.113000.003430.07193excludedHepG2HNRNPK
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.242000.000000.00037includedHepG2QKI
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.377000.000540.00832includedHepG2U2AF2
SESCAMP5ENSG00000198794.7chr15+752999287530006975287896752880147530413275304187-0.247000.010990.09827excludedHepG2U2AF2
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.223000.000040.00447includedHepG2AKAP1
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.309000.000070.01064includedHepG2SRSF7
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753103120.575000.000940.04363includedHepG2SFPQ
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.654000.000000.00000includedHepG2PTBP1
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.259000.000070.04327includedHepG2UPF1
SESCAMP5ENSG00000198794.7chr15+7530000175300069752879137528801475304132753041870.254000.000430.03250includedHepG2FTO
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.703000.000000.00003includedHepG2FTO
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.403000.000000.00000includedHepG2MATR3
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.411000.000000.00000includedHepG2SSB
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.237000.000030.00444includedHepG2IGF2BP3
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.210000.000190.01920includedHepG2TIAL1
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753103120.375000.000000.00003includedHepG2SUPV3L1
SESCAMP5ENSG00000198794.7chr15+7529992875300069752878967528801475304132753041870.619000.000010.00049includedHepG2HNRNPC
SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.436000.000050.01642includedHepG2PRPF4
SESCAMP5ENSG00000198794.7chr15+752999287530006975287896752880147530413275304187-0.429000.000000.00102excludedHepG2NOLC1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SCAMP5 is not avaliable on ENCORE database.