STRADA

General Information

Gene Name       : STRADA
Gene ID             : ENSG00000266173.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: STRADA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878STRADAENSG00000266173.632.3233.6632.99ENCSR000AEF
HepG2STRADAENSG00000266173.618.6717.6418.16ENCSR985KAT
K562STRADAENSG00000266173.620.8520.4820.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for STRADA is not avaliable on ENCORE database.



Proteins bound to RNA
  • STRADA RNA is bound by 5 proteins.  







eCLIP assay for STRADA is not avaliable on ENCORE database.





5 proteins are bound to STRADA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr176179072261790788-3'-UTR,CDS,intron-Distal,intron-Proximal4.704034.68690HepG2PRPF8
chr176178141361781470-3'-UTR,intron-Distal,intron-Proximal4.420755.07796HepG2SF3B4
chr176178157761781718-3'-UTR,CDS,intron-Distal,intron-Proximal4.815226.26248HepG2PRPF8
chr176178815061788249-3'-UTR,CDS,intron-Distal,intron-Proximal3.854638.55183K562SF3B4
chr176178132061781368-3'-UTR,CDS,intron-Distal,intron-Proximal4.846024.86944K562AQR
chr176178164261781701-3'-UTR,CDS,intron-Distal,intron-Proximal3.942344.89208K562AQR
chr176179076661790883-3'-UTR,CDS,intron-Distal,intron-Proximal3.322804.25541HepG2GRWD1
chr176178816561788206-3'-UTR,CDS,intron-Distal,intron-Proximal3.513153.91876HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for STRADA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for STRADA is not available on ENCORE database.

  • 56 RBPs can affect the levels of STRADA.  








The Knockdown/knockout RNA-Seq assay for STRADA is not available on ENCORE database.





56 RBPs can affect the gene expression of STRADA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
STRADAENSG00000266173.1569.36960396.335700.522505.395604.60180HepG2ACO1
STRADAENSG00000266173.1739.36970414.289400.835606.811506.01870HepG2AKAP1
STRADAENSG00000266173.1498.68000398.158200.324702.144201.45760HepG2AKAP8L
STRADAENSG00000266173.1815.05480574.207500.505202.948201.94050HepG2CCAR1
STRADAENSG00000266173.1489.53490396.201900.305102.085501.49630HepG2CKAP4
STRADAENSG00000266173.1570.63070307.084500.893805.599104.50760HepG2CNOT7
STRADAENSG00000266173.1484.75670366.531800.403203.410802.49660HepG2DDX19B
STRADAENSG00000266173.1415.21320302.247200.458002.614401.95190HepG2DDX21
STRADAENSG00000266173.1563.74830396.836200.506403.010902.36190HepG2DDX3X
STRADAENSG00000266173.1420.41580615.49070-0.549902.279101.39460HepG2DDX59
STRADAENSG00000266173.1427.25570310.121700.462203.866803.12230HepG2DNAJC2
STRADAENSG00000266173.1448.61300325.991800.460502.322701.47630HepG2EEF2
STRADAENSG00000266173.1460.93420327.704800.492102.650302.07000HepG2EIF2S1
STRADAENSG00000266173.1527.50980362.127800.542603.221102.53220HepG2EIF4A3
STRADAENSG00000266173.1740.91160542.050900.450802.257501.55850HepG2FIP1L1
STRADAENSG00000266173.1331.25940542.92580-0.712802.407801.46680HepG2FTO
STRADAENSG00000266173.1533.57620365.445800.545903.416702.65270HepG2FXR1
STRADAENSG00000266173.1538.93240338.965600.668904.696203.83960HepG2G3BP1
STRADAENSG00000266173.1446.55230614.42960-0.460402.556801.93880HepG2GPKOW
STRADAENSG00000266173.1417.78530315.865700.403402.117601.54440HepG2HNRNPA1
STRADAENSG00000266173.1600.12030351.347600.772306.986605.92660HepG2HNRNPC
STRADAENSG00000266173.1478.97870349.024300.456503.783803.08580HepG2HNRNPU
STRADAENSG00000266173.1652.08680365.573700.834807.394006.33560HepG2MAGOH
STRADAENSG00000266173.1511.85570376.257200.443902.277001.70020HepG2NCBP2
STRADAENSG00000266173.1553.95530340.762000.700907.891707.06410HepG2PTBP1
STRADAENSG00000266173.1475.77100615.20790-0.370802.078101.49200HepG2PUM2
STRADAENSG00000266173.1494.42190403.686600.292401.897601.36780HepG2PUS1
STRADAENSG00000266173.1745.19420369.070801.0136015.0885013.79530HepG2QKI
STRADAENSG00000266173.1486.24160312.838900.636203.241702.09220HepG2RCC2
STRADAENSG00000266173.1456.01360353.200300.368502.254501.69130HepG2RECQL
STRADAENSG00000266173.1447.98930257.500300.798806.834905.91710HepG2RPS19
STRADAENSG00000266173.1482.81600355.281300.442402.171301.45740HepG2RPS2
STRADAENSG00000266173.1395.30840310.818400.346802.138301.55930HepG2SAFB2
STRADAENSG00000266173.1563.82630354.791600.668206.917406.04930HepG2SF3B4
STRADAENSG00000266173.1413.47270556.18830-0.427802.085901.46130HepG2SLBP
STRADAENSG00000266173.1479.87730362.461500.404703.206602.52210HepG2SMN1
STRADAENSG00000266173.1440.04330314.500900.484502.303701.43860HepG2SMNDC1
STRADAENSG00000266173.1730.58620370.319800.9802015.9120014.97660HepG2SRSF1
STRADAENSG00000266173.1437.23230624.47270-0.514202.752301.75430HepG2SRSF3
STRADAENSG00000266173.1406.54180536.22240-0.399403.087002.35750HepG2SRSF7
STRADAENSG00000266173.1809.59400663.484200.287002.401501.91660HepG2SSB
STRADAENSG00000266173.1819.76540651.234800.331902.437201.84600HepG2SUCLG1
STRADAENSG00000266173.1499.66250332.841500.586005.155304.42910HepG2TAF15
STRADAENSG00000266173.1432.48310305.853300.499703.409902.48680HepG2TIA1
STRADAENSG00000266173.1643.22420339.122200.9234012.4232011.49510HepG2TIAL1
STRADAENSG00000266173.1544.80050422.438900.366902.761202.16500HepG2UTP3
STRADAENSG00000266173.1590.45040808.09500-0.452703.281802.65290K562AQR
STRADAENSG00000266173.1973.292101203.93410-0.306802.832101.84740K562CELF1
STRADAENSG00000266173.1661.43570446.357300.567304.717103.95820K562HNRNPC
STRADAENSG00000266173.1370.61810511.04990-0.463502.616201.41860K562HNRNPK
STRADAENSG00000266173.1490.85080621.01830-0.339402.475001.63010K562HNRNPU
STRADAENSG00000266173.1837.885601070.90690-0.354002.849601.33820K562NOL12
STRADAENSG00000266173.1338.65360478.48510-0.498703.130102.08890K562PCBP2
STRADAENSG00000266173.1591.51420435.859700.440403.104601.58180K562PHF6
STRADAENSG00000266173.1591.89860400.233700.564404.242403.08700K562PSIP1
STRADAENSG00000266173.1503.73280365.294600.463502.995701.96250K562RCC2
STRADAENSG00000266173.1583.82350440.647300.405802.610601.56150K562SAFB
STRADAENSG00000266173.1463.62460346.275700.420902.267601.36030K562SRFBP1
STRADAENSG00000266173.1791.50180512.258700.627606.666005.57710K562SRSF1
STRADAENSG00000266173.1640.00280853.54980-0.415402.560501.41110K562UTP3
STRADAENSG00000266173.1635.84850910.29540-0.517704.812003.62710K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for STRADA is not available on ENCORE database.





26 RBPs can affect the splicing of STRADA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805693618057730.256000.003890.06198includedK562SRSF1
SESTRADAENSG00000266173.1chr17-617846066178477861783994617840996178785061787974-0.480000.003310.05396excludedK562SF3B4
SESTRADAENSG00000266173.1chr17-617846066178477861783994617840996178785061787974-0.544000.002570.04462excludedHepG2U2AF1
SESTRADAENSG00000266173.1chr17-6178136461781407617810176178111161781700617819420.131000.000130.09396includedK562TROVE2
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805693618057730.275000.000290.03056includedHepG2QKI
SESTRADAENSG00000266173.1chr17-618039976180405561791365617914686180569361805773-0.212000.007460.07256excludedHepG2U2AF2
SESTRADAENSG00000266173.1chr17-617846066178477861783994617840996178785061787974-0.219000.007220.06270excludedK562AQR
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805693618057730.477000.000020.00202includedHepG2SFPQ
SESTRADAENSG00000266173.1chr17-617813646178140761781017617811116178170061781942-0.155000.000780.04957excludedHepG2FTO
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805693618057730.248000.000270.05530includedK562APOBEC3C
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805693618057730.312000.000170.09916includedHepG2PPIG
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805693618057730.262000.000250.00813includedHepG2SRSF1
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805693618057730.266000.001740.09528includedHepG2IGF2BP3
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805693618057730.332000.000000.00084includedK562EIF4G2
SESTRADAENSG00000266173.1chr17-617846066178477861783994617840996178785061787974-0.512000.000060.00191excludedK562U2AF2
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805717618057730.512000.000000.00031includedK562TARDBP
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805693618057730.240000.000470.08213includedHepG2DDX55
SESTRADAENSG00000266173.1chr17-617846066178477861783994617840996178785061787974-0.322000.001090.04789excludedK562HNRNPK
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805693618057730.389000.000070.00733includedHepG2SRSF9
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805693618057730.406000.000210.05047includedHepG2PRPF4
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805717618057730.468000.000000.00020includedK562PTBP1
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805693618057730.514000.000010.00020includedK562HNRNPC
A3SSSTRADAENSG00000266173.1chr17-6178105961781270617810596178111161781364617814070.187000.000240.01181longerHepG2U2AF1
A5SSSTRADAENSG00000266173.1chr17-6178170061781942617817916178194261781364617814070.200000.000080.02201longerK562HNRNPUL1
A5SSSTRADAENSG00000266173.1chr17-617817006178194261781791617819426178136461781407-0.425000.000300.05408shorterK562TARDBP
A5SSSTRADAENSG00000266173.1chr17-617817006178194261781791617819426178136461781407-0.640000.000000.00007shorterHepG2SRSF1
A5SSSTRADAENSG00000266173.1chr17-617817006178194261781791617819426178136461781407-0.361000.000030.00419shorterK562HNRNPC
A5SSSTRADAENSG00000266173.1chr17-617817006178194261781791617819426178136461781407-0.580000.000000.00015shorterK562SRSF1
MXESTRADAENSG00000266173.1chr17-61791365617914686180399761804055617907656179088761805693618057730.323000.000070.024631includedK562KHDRBS1
MXESTRADAENSG00000266173.1chr17-61791365617914686180399761804055617907656179088761805693618057730.189000.001140.036471includedK562UCHL5
MXESTRADAENSG00000266173.1chr17-61791365617914686180399761804055617907656179088761805693618057730.175000.000240.022761includedHepG2IGF2BP3
MXESTRADAENSG00000266173.1chr17-61791365617914686180399761804055617907656179088761805693618057730.202000.000110.006791includedHepG2SF3A3
MXESTRADAENSG00000266173.1chr17-61791365617914686180399761804055617907656179088761805693618057730.137000.000000.001321includedK562EIF4G2
MXESTRADAENSG00000266173.1chr17-61791365617914686180399761804055617907656179088761805693618057730.280000.000010.000751includedK562EFTUD2
MXESTRADAENSG00000266173.1chr17-61791365617914686180399761804055617907656179088761805693618057730.247000.000000.000001includedHepG2SFPQ
MXESTRADAENSG00000266173.1chr17-61791365617914686180399761804055617907656179088761805693618057730.172000.000050.002471includedHepG2DDX55
MXESTRADAENSG00000266173.1chr17-61791365617914686180399761804055617907656179088761805693618057730.183000.000420.010191includedK562HNRNPC
MXESTRADAENSG00000266173.1chr17-61791365617914686180399761804055617907656179088761805693618057730.265000.000060.016091includedHepG2PRPF4
MXESTRADAENSG00000266173.1chr17-61791365617914686180399761804055617907656179088761805693618057730.177000.004020.064411includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for STRADA is not avaliable on ENCORE database.