C19orf60

General Information

Gene Name       : C19orf60
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C19orf60)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C19orf60 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C19orf60 RNA is bound by 13 proteins.  







eCLIP assay for C19orf60 is not avaliable on ENCORE database.





13 proteins are bound to C19orf60 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191870305618703117+3'-UTR3.437413.89838K562PABPC4
chr191870295918703046+3'-UTR,CDS3.559244.91517HepG2LARP4
chr191870295518703034+3'-UTR,CDS3.296469.66657K562DDX55
chr191870296818703040+3'-UTR,CDS3.028953.77414K562APOBEC3C
chr191870166218701736+3'-UTR,CDS,intron-Proximal3.493894.33455K562LIN28B
chr191870166318701731+3'-UTR,CDS,intron-Proximal3.7292710.22307K562DDX55
chr191870296418703056+3'-UTR,CDS4.6294816.71931K562PABPC4
chr191869980718699897+CDS,intron-Proximal4.5827010.67407K562DDX55
chr191869962318699710+CDS3.343686.43549K562DDX55
chr191870017118700262+CDS,intron-Distal,intron-Proximal3.358795.46476K562AQR
chr191870013618700226+CDS,intron-Distal,intron-Proximal4.521203.96837K562XRCC6
chr191869988618699933+CDS,intron-Proximal5.374888.34710K562AQR
chr191869990618700042+intron-Distal,intron-Proximal4.5072712.12719K562DDX24
chr191870011018700179+intron-Distal,intron-Proximal3.922103.65854HepG2RBFOX2
chr191869989318700012+intron-Distal,intron-Proximal3.104034.58130K562ZC3H11A
chr191869994718700011+intron-Distal,intron-Proximal3.824753.95034K562DROSHA
chr191869996118700097+intron-Distal,intron-Proximal3.3769714.71200K562PRPF8
chr191869990818700083+intron-Distal,intron-Proximal4.3219214.55538K562RBFOX2
chr191869993918700012+intron-Distal,intron-Proximal4.977347.48549HepG2RBFOX2
chr191870067918700744+intron-Distal3.746583.11802K562HNRNPK
chr191870001218700062+intron-Distal3.788083.14375HepG2RBFOX2
chr191869993318699990+intron-Distal,intron-Proximal3.784594.52312K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C19orf60 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C19orf60 is not available on ENCORE database.

  • 61 RBPs can affect the levels of C19orf60.  








The Knockdown/knockout RNA-Seq assay for C19orf60 is not available on ENCORE database.





61 RBPs can affect the gene expression of C19orf60 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C19orf60ENSG00000006015.13203.75300111.767700.866203.173402.16240HepG2ABCF1
C19orf60ENSG00000006015.13133.0595065.131301.030503.330402.75450HepG2AKAP1
C19orf60ENSG00000006015.13185.4064069.446901.416608.538807.55660HepG2BOP1
C19orf60ENSG00000006015.13120.3743063.752900.916903.025602.31100HepG2CPSF6
C19orf60ENSG00000006015.13179.55110102.089900.814504.011703.22580HepG2DKC1
C19orf60ENSG00000006015.1359.5379029.399501.017902.550501.91980HepG2DNAJC2
C19orf60ENSG00000006015.13155.1651051.519201.590508.178607.19670HepG2EIF2S1
C19orf60ENSG00000006015.13160.1537056.931101.492107.848606.77420HepG2EIF4A3
C19orf60ENSG00000006015.13117.5511055.437501.084303.242902.50120HepG2EIF4B
C19orf60ENSG00000006015.13131.2665063.868701.039202.424001.47890HepG2FTO
C19orf60ENSG00000006015.1393.2477053.289500.807102.150701.56170HepG2G3BP1
C19orf60ENSG00000006015.1377.9615029.926101.381303.763303.02700HepG2HNRNPA1
C19orf60ENSG00000006015.13118.8893033.293701.836207.977706.84560HepG2HNRNPC
C19orf60ENSG00000006015.1382.4247033.073101.317304.662703.89270HepG2HNRNPU
C19orf60ENSG00000006015.13116.8212069.818100.742502.406801.72980HepG2IGF2BP1
C19orf60ENSG00000006015.13117.7766054.165501.120503.955503.16200HepG2IGF2BP2
C19orf60ENSG00000006015.1379.8676033.782001.241304.276103.38420HepG2ILF2
C19orf60ENSG00000006015.13168.8098085.442400.982304.013603.00990HepG2LARP4
C19orf60ENSG00000006015.1366.8359027.901001.260202.623401.44610HepG2LIN28B
C19orf60ENSG00000006015.13155.8625057.472501.439207.224206.17910HepG2MAGOH
C19orf60ENSG00000006015.13148.4158057.792301.360605.827504.93710HepG2MATR3
C19orf60ENSG00000006015.13161.3195059.152101.447307.176606.17900HepG2NCBP2
C19orf60ENSG00000006015.13102.7866062.231200.723802.281801.72020HepG2PCBP1
C19orf60ENSG00000006015.13111.2764070.791600.652402.387401.82830HepG2PUM1
C19orf60ENSG00000006015.13188.55530108.690900.794704.380103.63790HepG2PUS1
C19orf60ENSG00000006015.13127.5682032.087601.991108.276506.55600HepG2RBM27
C19orf60ENSG00000006015.13139.0660070.472700.980503.949403.32470HepG2NELFE
C19orf60ENSG00000006015.1385.8826029.585501.537404.169703.19590HepG2RPS2
C19orf60ENSG00000006015.1363.5595018.001301.819904.829803.77280HepG2RPS3A
C19orf60ENSG00000006015.1371.9220035.475501.019502.399401.52150HepG2SERBP1
C19orf60ENSG00000006015.13118.6524065.924800.847702.909402.30610HepG2SF3B4
C19orf60ENSG00000006015.1389.9934044.987701.000203.015002.01060HepG2SMNDC1
C19orf60ENSG00000006015.13116.1509069.663600.737402.456401.79760HepG2SRSF7
C19orf60ENSG00000006015.13128.9539064.095901.008502.748301.68470HepG2TBRG4
C19orf60ENSG00000006015.1324.3496056.83280-1.222802.913102.05730HepG2TIA1
C19orf60ENSG00000006015.1365.9630032.112601.038402.607002.11910HepG2TIAL1
C19orf60ENSG00000006015.1371.1318032.425601.133303.431802.81870HepG2TRIM56
C19orf60ENSG00000006015.1355.2095096.49270-0.805502.208001.64030HepG2U2AF1
C19orf60ENSG00000006015.13110.6340042.485301.380702.885301.85970HepG2UPF2
C19orf60ENSG00000006015.1395.9994045.729901.069801.926801.31430HepG2XRN2
C19orf60ENSG00000006015.13193.90870130.635200.569702.791802.24320HepG2ZNF622
C19orf60ENSG00000006015.13505.83790292.558700.789809.010008.06160K562AGGF1
C19orf60ENSG00000006015.13287.18670203.975600.493502.928001.37620K562AKAP1
C19orf60ENSG00000006015.13497.54630321.496700.629902.267801.39000K562AKAP8
C19orf60ENSG00000006015.13560.47390304.425200.880509.454408.16320K562AKAP8L
C19orf60ENSG00000006015.13257.39970397.55300-0.627103.549702.90150K562AQR
C19orf60ENSG00000006015.13643.40760319.424201.010203.139402.16310K562ATP5C1
C19orf60ENSG00000006015.13224.62180140.460800.677203.590102.49030K562BCLAF1
C19orf60ENSG00000006015.13438.43520314.760100.478003.399102.16640K562CPEB4
C19orf60ENSG00000006015.13344.46790206.672700.736902.782801.73840K562DDX3X
C19orf60ENSG00000006015.13331.68970231.842000.516603.127402.36970K562EIF2S2
C19orf60ENSG00000006015.13150.80540215.91840-0.517802.178601.44670K562EIF4A3
C19orf60ENSG00000006015.13295.17620209.180400.496702.362301.57900K562FIP1L1
C19orf60ENSG00000006015.1319.3249064.71720-1.743704.809403.81780K562G3BP2
C19orf60ENSG00000006015.13488.98760308.930300.662402.227101.54540K562GRSF1
C19orf60ENSG00000006015.13411.76100319.152000.367502.204201.40820K562HNRNPU
C19orf60ENSG00000006015.13181.0238099.117100.868903.073801.97160K562IGF2BP2
C19orf60ENSG00000006015.13206.24630103.927100.988703.218902.21780K562MATR3
C19orf60ENSG00000006015.13138.06830215.61240-0.643103.083101.78740K562NCBP2
C19orf60ENSG00000006015.13362.15560237.452900.608903.799902.81630K562PPIG
C19orf60ENSG00000006015.13202.84690124.104300.708703.004802.05660K562PSIP1
C19orf60ENSG00000006015.13159.50480101.182700.656502.795202.12760K562PTBP1
C19orf60ENSG00000006015.13410.23820294.157400.479803.277802.64090K562RBM15
C19orf60ENSG00000006015.13153.2038097.008000.659202.587201.77590K562RBM22
C19orf60ENSG00000006015.13160.6444093.690100.777803.446402.25370K562SRSF5
C19orf60ENSG00000006015.13226.98140100.386201.176908.019506.73760K562TARDBP
C19orf60ENSG00000006015.13183.4705096.835500.921804.797803.67480K562TIA1
C19orf60ENSG00000006015.13235.76510327.94900-0.476102.605201.78200K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C19orf60 is not available on ENCORE database.





10 RBPs can affect the splicing of C19orf60 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC19orf60ENSG00000006015.13chr19+187002221870049318699804186998871870166318701743-0.594000.000000.00000excludedK562HNRNPC
A5SSC19orf60ENSG00000006015.13chr19+186998041870049318699804186998871870166318701743-0.573000.000000.00005shorterK562HNRNPC
RIC19orf60ENSG00000006015.13chr19+186998041870049318699804186998871870028818700493-0.310000.000140.02077excludedK562APOBEC3C
RIC19orf60ENSG00000006015.13chr19+186998041870049318699804186998871870022218700493-0.182000.013880.09979excludedK562AKAP8L
RIC19orf60ENSG00000006015.13chr19+186998041870049318699804186998871870022218700493-0.271000.000530.05327excludedK562ZC3H8
RIC19orf60ENSG00000006015.13chr19+1870166318703146187016631870174318702917187031460.235000.002840.02216includedHepG2SF3B4
RIC19orf60ENSG00000006015.13chr19+1870166318703146187016631870174318702917187031460.081000.014840.07589includedK562AQR
MXEC19orf60ENSG00000006015.13chr19+18699804187004931870166318701743186996181869971018702917187031370.454000.000030.015391includedK562KHDRBS1
MXEC19orf60ENSG00000006015.13chr19+18699804186998871870166318701743186996111869971018702917187031460.337000.000000.000081includedK562TARDBP
MXEC19orf60ENSG00000006015.13chr19+18699804187004931870166318701743186996181869971018702917187031370.124000.000270.013801includedK562SBDS
MXEC19orf60ENSG00000006015.13chr19+18699804186998871870166318701743186996111869971018702917187031460.120000.000350.016311includedK562SBDS
MXEC19orf60ENSG00000006015.13chr19+18699804186998871870166318701743186996111869971018702917187031460.197000.002360.077581includedK562HNRNPU
MXEC19orf60ENSG00000006015.13chr19+18699804186998871870166318701743186996111869971018702917187031460.181000.000020.002371includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C19orf60 is not avaliable on ENCORE database.