PHTF2

General Information

Gene Name       : PHTF2
Gene ID             : ENSG00000006576.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PHTF2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PHTF2ENSG00000006576.1631.8127.4629.63ENCSR000AEF
HepG2PHTF2ENSG00000006576.164.777.596.18ENCSR985KAT
K562PHTF2ENSG00000006576.1620.8417.5619.20ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PHTF2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PHTF2 RNA is bound by 27 proteins.  







eCLIP assay for PHTF2 is not avaliable on ENCORE database.





27 proteins are bound to PHTF2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr77756971977569827+3'-UTR,intron-Distal,intron-Proximal,polyA_site5.8945210.62660K562QKI
chr77758561077585655+3'-UTR4.385064.57464K562PUM2
chr77742815577428289+5'-UTR,intron-Proximal3.749776.36410K562DDX3X
chr77754977577549889+CDS,intron-Distal,intron-Proximal3.973855.47926K562AQR
chr77757199077572047+CDS,intron-Proximal5.4865420.89142K562U2AF2
chr77754970477549780+CDS4.141533.83925K562YBX3
chr77753810777538169+CDS,intron-Proximal3.733216.25732K562DDX24
chr77756702677567132+CDS,intron-Distal,intron-Proximal3.045143.55800HepG2BCLAF1
chr77756932177569376+CDS,intron-Proximal5.1831710.10798K562U2AF2
chr77755194277552014+CDS4.850856.44794K562UCHL5
chr77754953477549620+CDS,intron-Proximal3.838145.02403K562SF3B4
chr77757199677572045+CDS,intron-Proximal5.721548.11261K562U2AF1
chr77753955477539732+CDS,intron-Proximal3.222426.93851K562BUD13
chr77755844077558521+CDS3.022404.03389K562ZNF622
chr77753002777530046+CDS,intron-Proximal3.419194.59506K562DDX24
chr77754965277549783+CDS,intron-Proximal3.082939.00124K562ZNF622
chr77755194077552098+CDS,intron-Proximal3.698833.14999HepG2GRWD1
chr77753122077531303+CDS,intron-Proximal3.433206.23623K562GPKOW
chr77754959577549736+CDS,intron-Proximal3.723044.51739HepG2BCLAF1
chr77753004677530098+CDS,intron-Proximal3.341324.70526K562DDX24
chr77752292877522985+CDS,intron-Proximal3.850446.25732K562DDX24
chr77754959077549783+CDS,intron-Proximal3.560754.56136K562GRWD1
chr77757199177572043+CDS,intron-Proximal3.455417.55775HepG2U2AF2
chr77757162677571720+intron-Distal3.032854.76345K562KHSRP
chr77757380177573888+intron-Distal3.329954.48636K562SAFB2
chr77756184777561994+intron-Distal3.961474.89657K562EIF4G2
chr77748017577480242+intron-Distal4.111313.30696K562EXOSC5
chr77754515177545273+intron-Distal3.868263.24603K562KHSRP
chr77744968577449732+intron-Distal4.288737.31419K562EXOSC5
chr77747713877477243+intron-Distal5.458054.38664K562QKI
chr77755828077558400+intron-Distal,intron-Proximal4.0429911.21801K562KHSRP
chr77754088677541003+intron-Distal3.975333.90026K562KHSRP
chr77757057577570614+intron-Distal3.578403.02234K562KHSRP
chr77753124977531338+intron-Distal,intron-Proximal4.639915.50285K562PRPF8
chr77757179477571852+intron-Distal4.237274.58794K562KHSRP
chr77742839777428501+intron-Distal4.015433.76710K562NONO
chr77754879077548875+intron-Distal6.378318.10458K562QKI
chr77757144277571524+intron-Distal4.372355.05197K562HNRNPK
chr77754881277548881+intron-Distal4.294804.05848HepG2QKI
chr77745077677450884+intron-Distal4.926935.04868K562HNRNPM
chr77744902477449087+intron-Distal4.752596.41304K562EXOSC5
chr77757920677579271+intron-Distal,intron-Proximal4.757185.85485K562KHSRP
chr77747594277476005+intron-Distal4.7001810.46790HepG2PCBP2
chr77747592577476022+intron-Distal5.452947.94547HepG2DDX59
chr77743459377434654+intron-Distal4.519574.30178K562PTBP1
chr77744798477448082+intron-Distal3.741946.25647K562HNRNPM
chr77743299377433060+intron-Distal4.337503.26170K562EIF4G2
chr77746765177467793+intron-Distal4.097743.42844K562KHSRP
chr77745103077451121+intron-Distal3.635443.59509K562HNRNPM
chr77757172077571794+intron-Distal3.394034.52210K562KHSRP
chr77757079977570879+intron-Distal4.413699.85516K562KHSRP
chr77747594577476045+intron-Distal3.836376.59866K562ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PHTF2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PHTF2 is not available on ENCORE database.

  • 95 RBPs can affect the levels of PHTF2.  








The Knockdown/knockout RNA-Seq assay for PHTF2 is not available on ENCORE database.





95 RBPs can affect the gene expression of PHTF2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PHTF2ENSG00000006576.12916.04950434.290801.076706.501305.72430HepG2AKAP1
PHTF2ENSG00000006576.12493.78440313.024600.657504.138502.87020HepG2AKAP8
PHTF2ENSG00000006576.12492.99540314.474400.648505.667804.60570HepG2AKAP8L
PHTF2ENSG00000006576.12499.19020359.370300.474002.028101.35180HepG2ASCC1
PHTF2ENSG00000006576.12797.37890526.467000.598807.668706.61830HepG2AUH
PHTF2ENSG00000006576.12196.70210355.00680-0.851804.760203.53080HepG2BCCIP
PHTF2ENSG00000006576.12150.18980308.48600-1.038406.727505.39340HepG2BCLAF1
PHTF2ENSG00000006576.12462.58000339.559200.445903.029001.74010HepG2BUD13
PHTF2ENSG00000006576.12339.03530445.10050-0.392702.322001.61080HepG2CALR
PHTF2ENSG00000006576.12486.14000341.416500.509702.265601.56110HepG2CIRBP
PHTF2ENSG00000006576.12371.36230533.59850-0.522905.531104.53240HepG2DAZAP1
PHTF2ENSG00000006576.12409.98270287.284300.513003.204501.74460HepG2DDX52
PHTF2ENSG00000006576.12534.11270389.337400.456002.804401.78600HepG2DDX5
PHTF2ENSG00000006576.12216.94270360.40030-0.732307.074906.09980HepG2DNAJC2
PHTF2ENSG00000006576.12244.48520342.75370-0.487402.182601.36260HepG2EEF2
PHTF2ENSG00000006576.12568.60420369.645500.621202.179001.56630HepG2EIF4B
PHTF2ENSG00000006576.12196.75770305.86390-0.636503.260402.35310HepG2EWSR1
PHTF2ENSG00000006576.12148.96610242.54520-0.703303.770102.46480HepG2FASTKD2
PHTF2ENSG00000006576.12311.41150457.47650-0.554902.561401.81760HepG2FIP1L1
PHTF2ENSG00000006576.12262.78740499.14450-0.925607.496804.85840HepG2FMR1
PHTF2ENSG00000006576.12344.81070216.507400.671304.427203.44670HepG2FUBP3
PHTF2ENSG00000006576.12530.10510355.318600.577103.026501.85850HepG2FUS
PHTF2ENSG00000006576.12537.88290355.385500.597803.579102.82650HepG2G3BP1
PHTF2ENSG00000006576.12248.84860502.03700-1.012508.478307.39910HepG2GPKOW
PHTF2ENSG00000006576.12162.85950304.17990-0.901304.893803.41910HepG2GRSF1
PHTF2ENSG00000006576.12157.03870367.11420-1.2251011.2067010.04280HepG2HNRNPA1
PHTF2ENSG00000006576.12256.58280396.68990-0.628605.025504.09510HepG2HNRNPF
PHTF2ENSG00000006576.12301.10130390.62930-0.375601.928401.31560HepG2IGF2BP1
PHTF2ENSG00000006576.12493.48170361.284300.449801.993201.41100HepG2IGF2BP2
PHTF2ENSG00000006576.12280.41320414.34990-0.563305.190404.21330HepG2ILF2
PHTF2ENSG00000006576.12150.68890385.28890-1.354404.925104.10400HepG2MATR3
PHTF2ENSG00000006576.12620.67350370.422100.744607.735906.44750HepG2MSI2
PHTF2ENSG00000006576.12719.73890529.110400.443802.151201.47720HepG2NOL12
PHTF2ENSG00000006576.12174.82370424.78680-1.2808011.9341010.48330HepG2NSUN2
PHTF2ENSG00000006576.12589.04210351.373100.745302.283701.62300HepG2PABPC4
PHTF2ENSG00000006576.12214.91640401.52320-0.901709.557808.13980HepG2PARN
PHTF2ENSG00000006576.12260.71600361.80050-0.472703.054002.28370HepG2PPIL4
PHTF2ENSG00000006576.12144.73070269.29200-0.895804.787903.75770HepG2PRPF8
PHTF2ENSG00000006576.12279.88660505.05780-0.851608.463507.49730HepG2PUF60
PHTF2ENSG00000006576.12303.33720536.11250-0.8216011.8738010.82610HepG2PUM1
PHTF2ENSG00000006576.12223.38270318.78570-0.513103.373302.70980HepG2PUS1
PHTF2ENSG00000006576.12734.22320360.591301.0258015.0170013.72690HepG2QKI
PHTF2ENSG00000006576.12641.81350324.611000.983306.138205.11460HepG2RAVER1
PHTF2ENSG00000006576.12318.50760505.22010-0.665606.255705.55250HepG2RBM22
PHTF2ENSG00000006576.12583.29520327.240300.833808.613807.47440HepG2RBM25
PHTF2ENSG00000006576.12556.28760370.506700.586205.190104.48720HepG2NELFE
PHTF2ENSG00000006576.12223.82630427.28720-0.932808.185607.10900HepG2RPLP0
PHTF2ENSG00000006576.12487.60260318.846600.612703.083802.08780HepG2RPS10
PHTF2ENSG00000006576.1296.37630270.74050-1.4902013.2802012.06200HepG2RPS19
PHTF2ENSG00000006576.12184.06870564.11670-1.615702.880401.49260HepG2SF1
PHTF2ENSG00000006576.12184.55980474.23540-1.3615010.855009.54370HepG2SF3B1
PHTF2ENSG00000006576.12230.89830346.63600-0.586204.090303.39460HepG2SF3B4
PHTF2ENSG00000006576.12802.95600527.662400.605603.371102.50390HepG2SNRNP70
PHTF2ENSG00000006576.12874.86500570.622900.616409.297508.52820HepG2SRFBP1
PHTF2ENSG00000006576.12634.09690361.795300.8094010.040309.26500HepG2SRSF1
PHTF2ENSG00000006576.12260.63840389.72430-0.580404.382203.53790HepG2SRSF7
PHTF2ENSG00000006576.12423.45840294.324500.524704.166803.51520HepG2SRSF9
PHTF2ENSG00000006576.12606.05690495.427600.290702.106201.64280HepG2SSB
PHTF2ENSG00000006576.12426.94510286.986300.573003.127601.95350HepG2STIP1
PHTF2ENSG00000006576.12427.01800309.056300.466303.243702.23130HepG2SUPT6H
PHTF2ENSG00000006576.12733.91760325.146701.1744020.5753019.24300HepG2TAF15
PHTF2ENSG00000006576.12277.39640466.87620-0.751105.742604.75390HepG2TARDBP
PHTF2ENSG00000006576.12132.36550232.90570-0.815203.642202.51810HepG2TFIP11
PHTF2ENSG00000006576.12451.99040298.817600.596904.549103.48460HepG2TIA1
PHTF2ENSG00000006576.12211.22370394.18020-0.900108.520907.73060HepG2TIAL1
PHTF2ENSG00000006576.12215.20430397.67790-0.885909.816708.85410HepG2TRIM56
PHTF2ENSG00000006576.12503.71590391.438500.363702.005901.46190HepG2U2AF1
PHTF2ENSG00000006576.12174.82200346.76420-0.988109.595307.78280HepG2UTP18
PHTF2ENSG00000006576.12621.25980319.187300.960706.896804.93490HepG2XRCC5
PHTF2ENSG00000006576.12677.27290356.975500.923807.271605.62020HepG2XRCC6
PHTF2ENSG00000006576.12155.66910342.04910-1.135708.126906.89600HepG2XRN2
PHTF2ENSG00000006576.12659.97170314.727001.0682019.8649018.35640HepG2ZC3H8
PHTF2ENSG00000006576.121136.54700856.266400.408403.443102.11030K562AARS
PHTF2ENSG00000006576.123465.713702148.907300.6894022.7193021.20470K562AGGF1
PHTF2ENSG00000006576.122770.680702236.048500.309202.860402.19620K562AKAP8L
PHTF2ENSG00000006576.121306.030801021.935900.353802.496201.67000K562BOP1
PHTF2ENSG00000006576.121790.591901074.064300.737303.806801.55520K562DAZAP1
PHTF2ENSG00000006576.121416.300101098.232800.366803.503502.31330K562DDX3X
PHTF2ENSG00000006576.122463.520301711.610400.5253011.3881010.16300K562DDX47
PHTF2ENSG00000006576.121468.212301124.946000.384104.844503.92870K562EIF2S2
PHTF2ENSG00000006576.12803.51620496.434400.694603.763002.57090K562EIF3A
PHTF2ENSG00000006576.121558.53420836.746100.8972010.479608.29160K562EIF3D
PHTF2ENSG00000006576.12976.805701228.41470-0.330702.422401.62890K562FIP1L1
PHTF2ENSG00000006576.121155.13850813.321000.506104.160002.73610K562FKBP4
PHTF2ENSG00000006576.121309.81790937.072800.483003.919502.81610K562FTO
PHTF2ENSG00000006576.121367.80400834.687700.7125011.137108.32290K562FUS
PHTF2ENSG00000006576.121964.714701369.738500.520302.389501.73900K562G3BP2
PHTF2ENSG00000006576.12848.382801499.12910-0.8213013.2547011.58140K562GRSF1
PHTF2ENSG00000006576.121472.803601010.358600.543604.687703.44610K562HNRNPM
PHTF2ENSG00000006576.121007.703001247.45110-0.307902.959002.03590K562HNRNPU
PHTF2ENSG00000006576.122843.097602271.544300.323702.908201.79890K562MAK16
PHTF2ENSG00000006576.12985.543901579.06190-0.6801010.554308.64130K562MATR3
PHTF2ENSG00000006576.12653.930201012.68350-0.631007.075105.64180K562METAP2
PHTF2ENSG00000006576.122504.555501863.295000.426602.377701.57380K562NAA15
PHTF2ENSG00000006576.121713.337801145.729000.580408.765706.61320K562NCBP2
PHTF2ENSG00000006576.121030.564501290.22410-0.324204.584503.65320K562NSUN2
PHTF2ENSG00000006576.121121.552801394.45040-0.314202.262101.52170K562PPIG
PHTF2ENSG00000006576.121039.57920760.464400.450903.528402.68080K562PRPF8
PHTF2ENSG00000006576.12957.459701537.16960-0.6830010.871909.61830K562PTBP1
PHTF2ENSG00000006576.123559.197702217.453500.6825010.472409.46270K562PUS1
PHTF2ENSG00000006576.121970.776201306.982700.592403.608001.94870K562RAVER1
PHTF2ENSG00000006576.122950.921402160.651500.449607.678006.72010K562RBM15
PHTF2ENSG00000006576.121146.812401474.22340-0.362303.013802.13180K562RBM22
PHTF2ENSG00000006576.122444.695501493.314800.711002.636301.47600K562SF1
PHTF2ENSG00000006576.12815.091901072.25550-0.395602.254201.32250K562SRSF4
PHTF2ENSG00000006576.121892.748601474.229800.360402.639501.42430K562STAU1
PHTF2ENSG00000006576.12930.935901525.18160-0.712209.019907.64610K562TARDBP
PHTF2ENSG00000006576.121654.371501368.053100.274103.322502.53950K562UPF1
PHTF2ENSG00000006576.12571.86570793.51460-0.472603.359201.98540K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PHTF2 is not available on ENCORE database.





9 RBPs can affect the splicing of PHTF2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPHTF2ENSG00000006576.12chr7+775395617753979677538109775382757754959577549782-0.078000.005860.08562excludedK562SRSF1
SEPHTF2ENSG00000006576.12chr7+775698447756997677569346775696197757201677572103-0.468000.000080.00230excludedHepG2U2AF1
SEPHTF2ENSG00000006576.12chr7+775698447756997677569346775696197757201677572103-0.339000.004880.05208excludedHepG2U2AF2
SEPHTF2ENSG00000006576.12chr7+775670267756715577558425775586447756934677569619-0.073000.001530.01743excludedK562AQR
SEPHTF2ENSG00000006576.12chr7+775395617753979677538085775382757754959577549782-0.071000.001640.01848excludedK562AQR
SEPHTF2ENSG00000006576.12chr7+774695377746961777428121774282887752292477522981-0.167000.000000.00003excludedK562AQR
SEPHTF2ENSG00000006576.12chr7+775670267756715577558425775586447756934677569619-0.117000.000010.00019excludedK562PUS1
SEPHTF2ENSG00000006576.12chr7+775789947757915077569844775699767758093377581029-0.241000.004020.05265excludedK562PUS1
SEPHTF2ENSG00000006576.12chr7+775670267756715577558425775586447756934677569619-0.066000.002080.04090excludedK562U2AF1
SEPHTF2ENSG00000006576.12chr7+775670267756715577558425775586447756934677569619-0.095000.000540.04087excludedK562HNRNPL
SEPHTF2ENSG00000006576.12chr7+775670267756715577558425775586447756934677569619-0.071000.001870.05455excludedK562UTP18
SEPHTF2ENSG00000006576.12chr7+7755846977558644775519397755209577567026775673300.128000.000660.09516includedK562UPF1
SEPHTF2ENSG00000006576.12chr7+775670267756715577558425775586447756934677569619-0.059000.005760.08094excludedK562U2AF2
A3SSPHTF2ENSG00000006576.12chr7+7752290877522981775229247752298177469537774696170.191000.000000.00000longerK562AQR
A5SSPHTF2ENSG00000006576.12chr7+7753956177539796775395617753972677549595775497820.067000.000330.00740longerK562AQR
MXEPHTF2ENSG00000006576.12chr7+77558425775586447756702677567155775519397755209577569346775697760.138000.004020.055651includedK562U2AF1
MXEPHTF2ENSG00000006576.12chr7+77551939775520957756702677567155775495957754978277569346775697760.151000.000000.000011includedK562PUS1
MXEPHTF2ENSG00000006576.12chr7+77558469775586447756702677567155775519397755209577569346775697760.136000.000020.000921includedK562PUS1
MXEPHTF2ENSG00000006576.12chr7+77558409775586447756702677567155775519397755209577569346775697760.137000.000010.000331includedK562PUS1
MXEPHTF2ENSG00000006576.12chr7+77558425775586447756702677567155775519397755209577569346775697760.152000.001640.027651includedK562SRSF1
MXEPHTF2ENSG00000006576.12chr7+77522924775229817753002777530097774281297742828877531078775312370.111000.000070.000891includedK562AQR
MXEPHTF2ENSG00000006576.12chr7+77558425775586447756702677567155775519397755209577569346775697760.124000.014990.087591includedK562AQR
MXEPHTF2ENSG00000006576.12chr7+77558469775586447756702677567155775519397755209577569346775697760.072000.006130.042701includedK562AQR
MXEPHTF2ENSG00000006576.12chr7+77558409775586447756702677567155775519397755209577569346775697760.101000.000460.004671includedK562AQR
MXEPHTF2ENSG00000006576.12chr7+77558409775586447756702677567155775519397755209577569346775697760.086000.002630.095591includedK562UTP18
MXEPHTF2ENSG00000006576.12chr7+77558425775586447756702677567155775519397755209577569346775697760.134000.002700.035201includedK562U2AF2
MXEPHTF2ENSG00000006576.12chr7+77558469775586447756702677567155775519397755209577569346775697760.090000.000720.012051includedK562U2AF2
MXEPHTF2ENSG00000006576.12chr7+77551939775520957755842577558644775495957754978277567026775671550.132000.000860.084701includedK562PCBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PHTF2 is not avaliable on ENCORE database.