NDUFAF7

General Information

Gene Name       : NDUFAF7
Gene ID             : ENSG00000003509.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: NDUFAF7)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDUFAF7ENSG00000003509.1519.7018.0918.89ENCSR000AEF
HepG2NDUFAF7ENSG00000003509.1526.6438.8432.74ENCSR985KAT
K562NDUFAF7ENSG00000003509.1514.9114.8714.89ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDUFAF7 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDUFAF7 RNA is bound by 7 proteins.  







eCLIP assay for NDUFAF7 is not avaliable on ENCORE database.





7 proteins are bound to NDUFAF7 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr23747099637471051+3'-UTR,CDS,intron-Proximal3.870458.23042HepG2U2AF2
chr23746871837468757+3'-UTR,CDS,intron-Proximal3.474704.22917HepG2PPIG
chr23746872037468785+3'-UTR,CDS,intron-Proximal3.599416.20035HepG2BCLAF1
chr23747106537471107+3'-UTR,CDS3.611844.46864HepG2BCLAF1
chr23747322037473337+3'-UTR,CDS4.711707.01471HepG2GRWD1
chr23746872437468832+3'-UTR,CDS,intron-Proximal6.5391918.03822HepG2PRPF8
chr23746871837468763+3'-UTR,CDS,intron-Proximal4.688416.51488K562LIN28B
chr23747474237474773+CDS,intron-Proximal4.554103.02457HepG2BCLAF1
chr23746328237463319+CDS,intron-Distal4.049083.68471HepG2BCLAF1
chr23746488537464950+CDS,intron-Proximal4.160116.02363HepG2U2AF2
chr23746499437465011+CDS,intron-Proximal4.435285.86049K562LIN28B
chr23746489937465008+CDS,intron-Proximal3.177968.05447HepG2PPIG
chr23747475537474798+CDS,intron-Proximal4.911553.37645HepG2PRPF8
chr23745940637459454+CDS,intron-Distal,intron-Proximal4.611515.68502HepG2PRPF8
chr23746489937464941+CDS,intron-Proximal5.512876.58593HepG2BCLAF1
chr23746495437465011+CDS,intron-Proximal4.060026.81385HepG2BCLAF1
chr23747489637475076+intron-Distal3.911833.12080HepG2XPO5
chr23746948937469554+intron-Distal3.509674.85249HepG2U2AF2
chr23747078537470844+intron-Distal3.470283.32861HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDUFAF7 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDUFAF7 is not available on ENCORE database.

  • 40 RBPs can affect the levels of NDUFAF7.  








The Knockdown/knockout RNA-Seq assay for NDUFAF7 is not available on ENCORE database.





40 RBPs can affect the gene expression of NDUFAF7 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDUFAF7ENSG00000003509.11365.62800516.11960-0.497302.878802.07940HepG2ASCC1
NDUFAF7ENSG00000003509.11426.66040577.67020-0.437202.590301.92190HepG2CPSF6
NDUFAF7ENSG00000003509.11616.32900935.83860-0.6026010.208308.92340HepG2DAZAP1
NDUFAF7ENSG00000003509.11453.53430597.54520-0.397802.063801.51440HepG2DDX3X
NDUFAF7ENSG00000003509.11408.64870553.58310-0.437903.518102.73170HepG2DNAJC21
NDUFAF7ENSG00000003509.11450.18890548.72010-0.285502.040501.46380HepG2DNAJC2
NDUFAF7ENSG00000003509.11762.53330530.908900.522202.819402.12470HepG2EIF4B
NDUFAF7ENSG00000003509.111125.53800915.806500.297402.945002.32790HepG2ETF1
NDUFAF7ENSG00000003509.11447.10680335.838200.412802.371501.64130HepG2FUBP3
NDUFAF7ENSG00000003509.11385.66250654.82990-0.763806.104705.17950HepG2GPKOW
NDUFAF7ENSG00000003509.11571.41980852.48060-0.577108.758607.62520HepG2HNRNPL
NDUFAF7ENSG00000003509.11504.51600636.63910-0.335602.225401.57170HepG2IGF2BP1
NDUFAF7ENSG00000003509.11524.78190630.81160-0.265502.041101.39990HepG2ILF2
NDUFAF7ENSG00000003509.11431.40000637.34310-0.563002.613201.67510HepG2MTPAP
NDUFAF7ENSG00000003509.11415.32940566.46760-0.447702.401301.80840HepG2NCBP2
NDUFAF7ENSG00000003509.11705.39830927.97510-0.395603.745102.85510HepG2NOL12
NDUFAF7ENSG00000003509.11443.59410550.80920-0.312302.050601.40750HepG2PPIL4
NDUFAF7ENSG00000003509.11445.47870885.83040-0.9917014.6156013.39240HepG2PUF60
NDUFAF7ENSG00000003509.11775.79770940.34460-0.277502.881802.27970HepG2PUM1
NDUFAF7ENSG00000003509.11735.71160939.65990-0.353002.917702.22920HepG2PUM2
NDUFAF7ENSG00000003509.11418.83320522.26080-0.318402.262801.69280HepG2PUS1
NDUFAF7ENSG00000003509.11480.99940650.92290-0.436502.537501.59090HepG2RBM27
NDUFAF7ENSG00000003509.11684.33840552.017300.309902.331301.78260HepG2SF3B4
NDUFAF7ENSG00000003509.11613.41630849.36600-0.469505.973505.00480HepG2SLBP
NDUFAF7ENSG00000003509.11691.01060576.196100.262001.764701.36310HepG2SRSF1
NDUFAF7ENSG00000003509.11614.73270874.62430-0.508706.330405.43690HepG2SRSF5
NDUFAF7ENSG00000003509.11653.89770517.933900.336202.506301.96920HepG2TAF15
NDUFAF7ENSG00000003509.11424.35310600.03950-0.499804.103003.51970HepG2TIAL1
NDUFAF7ENSG00000003509.11452.89700605.43730-0.418803.757803.12260HepG2TRIM56
NDUFAF7ENSG00000003509.11674.67350865.41300-0.359202.670901.81380HepG2TUFM
NDUFAF7ENSG00000003509.11448.55880626.33120-0.481602.079401.58630HepG2ZNF622
NDUFAF7ENSG00000003509.11607.93940759.79520-0.321702.705102.06010K562DDX47
NDUFAF7ENSG00000003509.11246.88000355.50790-0.526102.653301.76190K562EFTUD2
NDUFAF7ENSG00000003509.11554.74950387.843500.516302.756702.05110K562G3BP2
NDUFAF7ENSG00000003509.11325.24580458.54620-0.495503.027502.19760K562GPKOW
NDUFAF7ENSG00000003509.11282.00790405.18980-0.522903.099902.47250K562HNRNPC
NDUFAF7ENSG00000003509.11511.92800686.67550-0.423703.172402.03290K562HNRNPL
NDUFAF7ENSG00000003509.11330.65320447.59450-0.436902.633701.78320K562METAP2
NDUFAF7ENSG00000003509.11325.41530514.28620-0.660302.463801.54310K562PABPN1
NDUFAF7ENSG00000003509.11761.561801049.92430-0.463303.869202.90890K562PUF60
NDUFAF7ENSG00000003509.11251.90650352.43260-0.484502.010101.31920K562RPS19
NDUFAF7ENSG00000003509.11260.01340459.27060-0.820807.005605.83010K562TARDBP
NDUFAF7ENSG00000003509.11225.29820354.55140-0.654203.381802.24820K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDUFAF7 is not available on ENCORE database.





10 RBPs can affect the splicing of NDUFAF7 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENDUFAF7ENSG00000003509.11chr2+374697773746983637468720374689343747100537471116-0.258000.000000.00001excludedK562AQR
A3SSNDUFAF7ENSG00000003509.11chr2+374745983747477237474641374747723747311837473338-0.099000.006550.03660shorterK562AQR
A5SSNDUFAF7ENSG00000003509.11chr2+3747319437473424374731943747333837474598374747190.059000.000420.00898longerK562AQR
A5SSNDUFAF7ENSG00000003509.11chr2+374648993746501037464899374649783746872037468934-0.115000.001910.03241shorterK562AQR
A5SSNDUFAF7ENSG00000003509.11chr2+374687203746893437468720374687803746977737469836-0.108000.000560.01133shorterK562AQR
RINDUFAF7ENSG00000003509.11chr2+3746872037469836374687203746893437469777374698360.240000.000750.04143includedHepG2SFPQ
RINDUFAF7ENSG00000003509.11chr2+3746872037469836374687203746893437469777374698360.173000.005250.06525includedK562SF3B4
RINDUFAF7ENSG00000003509.11chr2+3746872037469836374687203746893437469777374698360.327000.000500.00503includedHepG2U2AF2
RINDUFAF7ENSG00000003509.11chr2+3746872037469836374687203746893437469777374698360.484000.000000.00041includedHepG2UCHL5
RINDUFAF7ENSG00000003509.11chr2+3746872037469836374687203746893437469777374698360.315000.001510.02070includedHepG2PRPF8
RINDUFAF7ENSG00000003509.11chr2+3746872037469836374687203746893437469777374698360.254000.002370.04192includedK562U2AF1
RINDUFAF7ENSG00000003509.11chr2+3746872037469836374687203746893437469777374698360.226000.000010.00016includedHepG2RBM22
RINDUFAF7ENSG00000003509.11chr2+374687203746983637468720374687803746977737469836-0.168000.001420.00923excludedK562AQR
RINDUFAF7ENSG00000003509.11chr2+3746872037469836374687203746893437469777374698360.192000.000800.04909includedHepG2SSB
MXENDUFAF7ENSG00000003509.11chr2+37468720374689343746977737469836374648993746497837471005374711160.485000.000380.009501includedK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDUFAF7 is not avaliable on ENCORE database.