NDUFAB1

General Information

Gene Name       : NDUFAB1
Gene ID             : ENSG00000004779.9
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: NDUFAB1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDUFAB1ENSG00000004779.940.4554.3647.41ENCSR000AEF
HepG2NDUFAB1ENSG00000004779.9144.16181.50162.83ENCSR985KAT
K562NDUFAB1ENSG00000004779.9131.1896.15113.67ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDUFAB1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDUFAB1 RNA is bound by 20 proteins.  







eCLIP assay for NDUFAB1 is not avaliable on ENCORE database.





20 proteins are bound to NDUFAB1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr162359246523592495-3'-UTR,intron-Distal4.1528418.49622K562PUM2
chr162359851723598550-3'-UTR,CDS,intron-Distal,intron-Proximal4.903975.54797K562SND1
chr162359235123592406-3'-UTR,intron-Distal,intron-Proximal7.2446727.47819HepG2SUB1
chr162359235323592443-3'-UTR,intron-Distal,intron-Proximal5.2598246.21281K562PABPC4
chr162359362523593671-3'-UTR,CDS,intron-Distal,intron-Proximal3.940288.42226K562PUM2
chr162359244323592494-3'-UTR,intron-Distal4.5267217.46620K562PABPC4
chr162359238123592492-3'-UTR,intron-Distal3.877468.48830K562LIN28B
chr162359243323592495-3'-UTR,intron-Distal3.5422417.49553HepG2LARP4
chr162359237523592433-3'-UTR,intron-Distal3.153495.12659HepG2LARP4
chr162359359623593604-3'-UTR,intron-Distal,intron-Proximal3.347725.47138HepG2SUB1
chr162359359523593625-3'-UTR,CDS,intron-Distal,intron-Proximal4.4714822.07297K562PUM2
chr162359240623592465-3'-UTR,intron-Distal7.5624629.52619HepG2SUB1
chr162359246523592493-3'-UTR,intron-Distal5.1866922.53809HepG2SUB1
chr162359238723592432-3'-UTR,intron-Distal3.684573.27746HepG2LIN28B
chr162359859423598673-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.955115.69951K562AQR
chr162359669023596744-3'-UTR,CDS,intron-Distal3.028754.03899K562SND1
chr162359666323596702-3'-UTR,CDS,intron-Distal4.216626.59840HepG2LARP4
chr162359362723593666-3'-UTR,CDS,intron-Distal,intron-Proximal4.948738.14065K562RPS3
chr162359234823592422-3'-UTR,intron-Distal,intron-Proximal4.6375219.70107K562PUM2
chr162359235923592421-3'-UTR,intron-Distal3.801256.46947K562NOLC1
chr162359242123592494-3'-UTR,intron-Distal3.234107.56199K562NOLC1
chr162359359623593616-3'-UTR,CDS,intron-Distal,intron-Proximal3.9199313.05232HepG2LARP4
chr162359855023598615-3'-UTR,5'-UTR,CDS,intron-Distal3.751145.59577K562SND1
chr162359362423593681-3'-UTR,CDS,intron-Distal,intron-Proximal3.246206.91779HepG2LARP4
chr162359855323598583-3'-UTR,CDS,intron-Distal5.733246.70843K562RPS3
chr162360239823602490-5'-UTR,intron-Distal,intron-Proximal3.0754913.56521HepG2U2AF2
chr162360670023606773-5'-UTR,intron-Distal,intron-Proximal3.786677.15089HepG2HNRNPM
chr162360753423607621-5'-UTR,CDS,intron-Distal,intron-Proximal3.2676913.16482K562YBX3
chr162360754523607631-5'-UTR,CDS,intron-Distal,intron-Proximal3.8616323.83177K562DDX3X
chr162360749823607597-CDS,intron-Distal3.3936115.23543K562RPS3
chr162360734723607447-CDS,intron-Distal5.486599.60578HepG2AQR
chr162360747923607508-CDS,intron-Distal3.542504.20287HepG2DDX3X
chr162360752723607600-CDS,intron-Distal,intron-Proximal4.287757.10858K562DROSHA
chr162360744123607509-CDS,intron-Distal3.688004.60670K562FXR2
chr162360750823607567-CDS,intron-Distal4.2582820.78317HepG2DDX3X
chr162360750523607597-CDS,intron-Distal4.2936925.01422HepG2RPS3
chr162360744223607505-CDS,intron-Distal3.9716111.26352HepG2RPS3
chr162360756723607603-CDS,intron-Distal,intron-Proximal3.999225.32728HepG2DDX3X
chr162360744323607485-CDS,intron-Distal3.289374.22960K562SND1
chr162360747123607545-CDS,intron-Distal3.5440624.06335K562DDX3X
chr162360744223607479-CDS,intron-Distal3.878727.70473HepG2DDX3X
chr162360494023605024-intron-Distal3.297303.63437HepG2HNRNPM
chr162360726023607393-intron-Distal3.372894.02608HepG2FUS
chr162360305323603106-intron-Distal4.146715.89423HepG2HNRNPM
chr162360730223607397-intron-Distal4.4045216.17391HepG2EFTUD2
chr162360730123607428-intron-Distal3.360599.49963K562AQR
chr162360658623606647-intron-Distal5.5462910.77450HepG2HNRNPM
chr162360300323603053-intron-Distal3.935865.63625HepG2HNRNPM
chr162360733223607425-intron-Distal4.711744.81990HepG2CDC40
chr162359400823594083-intron-Distal4.527895.44892HepG2FAM120A
chr162360730823607402-intron-Distal4.2945317.35270HepG2BUD13
chr162360478023604821-intron-Distal3.384183.11000HepG2HNRNPM
chr162360732023607422-intron-Distal3.557984.25142K562BUD13
chr162360553023605578-intron-Distal3.277113.11000HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDUFAB1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDUFAB1 is not available on ENCORE database.

  • 91 RBPs can affect the levels of NDUFAB1.  








The Knockdown/knockout RNA-Seq assay for NDUFAB1 is not available on ENCORE database.





91 RBPs can affect the gene expression of NDUFAB1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDUFAB1ENSG00000004779.51532.035401798.26300-0.231202.455001.72740HepG2AKAP8L
NDUFAB1ENSG00000004779.51468.813202128.81200-0.535405.302904.23250HepG2ASCC1
NDUFAB1ENSG00000004779.51649.697802022.52050-0.294001.992401.32900HepG2CIRBP
NDUFAB1ENSG00000004779.5576.13470791.58550-0.458303.317702.57200HepG2CPSF6
NDUFAB1ENSG00000004779.51447.936101655.36560-0.193202.057901.32970HepG2DDX19B
NDUFAB1ENSG00000004779.5762.528201072.47030-0.492104.048403.24200HepG2DDX21
NDUFAB1ENSG00000004779.5970.231401297.84510-0.419703.184002.36270HepG2DDX55
NDUFAB1ENSG00000004779.51669.823502117.16690-0.342402.159401.60720HepG2DDX6
NDUFAB1ENSG00000004779.51491.320201712.41780-0.199401.893201.31600HepG2DKC1
NDUFAB1ENSG00000004779.51247.042002035.24380-0.706708.310907.32200HepG2EIF2S1
NDUFAB1ENSG00000004779.5763.840001012.61700-0.406703.744902.51210HepG2EIF3G
NDUFAB1ENSG00000004779.51557.821602249.16430-0.529904.569803.75170HepG2EIF4A3
NDUFAB1ENSG00000004779.51443.960102189.91410-0.600804.532803.66330HepG2EIF4B
NDUFAB1ENSG00000004779.52683.793903042.13660-0.180801.967701.44180HepG2ETF1
NDUFAB1ENSG00000004779.51114.676901471.16840-0.400303.700802.79950HepG2FUBP3
NDUFAB1ENSG00000004779.51771.513102269.37120-0.357302.643801.96760HepG2FXR1
NDUFAB1ENSG00000004779.51274.852902105.14370-0.723608.304507.18280HepG2G3BP1
NDUFAB1ENSG00000004779.51535.681602234.92020-0.541305.635204.35320HepG2G3BP2
NDUFAB1ENSG00000004779.5645.49580897.24590-0.475103.225402.53890HepG2GPKOW
NDUFAB1ENSG00000004779.5742.67300979.92720-0.399903.068302.39140HepG2HNRNPA1
NDUFAB1ENSG00000004779.51749.604702131.72080-0.285002.085301.47320HepG2HNRNPK
NDUFAB1ENSG00000004779.5878.767101082.74730-0.301101.880701.37130HepG2HNRNPU
NDUFAB1ENSG00000004779.51265.822802139.82150-0.757409.789408.60610HepG2IGF2BP2
NDUFAB1ENSG00000004779.51243.732302008.17440-0.691202.676501.71050HepG2IGF2BP3
NDUFAB1ENSG00000004779.5775.020301105.99690-0.513008.896807.65500HepG2ILF2
NDUFAB1ENSG00000004779.51413.547101636.15400-0.211002.489401.52070HepG2KIF1C
NDUFAB1ENSG00000004779.51374.455302080.88250-0.598306.199405.13080HepG2PABPC4
NDUFAB1ENSG00000004779.51708.493702048.32550-0.261703.349202.69500HepG2PCBP1
NDUFAB1ENSG00000004779.51485.934202084.19910-0.488109.974109.06190HepG2PTBP1
NDUFAB1ENSG00000004779.51814.212902049.31700-0.175802.098101.56750HepG2PUM1
NDUFAB1ENSG00000004779.51550.108402047.81570-0.401704.939204.05710HepG2PUM2
NDUFAB1ENSG00000004779.51446.522602257.34280-0.6420012.6938011.49620HepG2QKI
NDUFAB1ENSG00000004779.51365.67490937.014100.543402.684701.98940HepG2RAVER1
NDUFAB1ENSG00000004779.51115.930101375.45680-0.301702.791701.93200HepG2RBM15
NDUFAB1ENSG00000004779.51613.015002048.64450-0.344903.512802.76040HepG2RBM25
NDUFAB1ENSG00000004779.51585.540202319.55400-0.5489012.0387011.06100HepG2NELFE
NDUFAB1ENSG00000004779.51482.218902160.27600-0.5435011.8715010.73010HepG2RECQL
NDUFAB1ENSG00000004779.5493.68670677.97380-0.457602.939002.30910HepG2RPS19
NDUFAB1ENSG00000004779.5503.95790680.38680-0.433102.764301.82570HepG2SERBP1
NDUFAB1ENSG00000004779.51885.566801268.219400.572101.874301.31670HepG2SF3A3
NDUFAB1ENSG00000004779.5540.281501124.52280-1.0575023.9396022.34910HepG2SMN1
NDUFAB1ENSG00000004779.52281.356402871.79350-0.332106.064505.40180HepG2SRFBP1
NDUFAB1ENSG00000004779.51852.725902264.98250-0.289904.284803.72800HepG2SRSF1
NDUFAB1ENSG00000004779.51143.340101842.65320-0.6885018.3581017.16620HepG2SRSF9
NDUFAB1ENSG00000004779.52034.321802493.34240-0.293504.623003.99390HepG2SSB
NDUFAB1ENSG00000004779.51501.195002167.74790-0.5301012.9996011.81650HepG2SUCLG1
NDUFAB1ENSG00000004779.5414.99150798.41600-0.9441013.7817011.80630HepG2SUPT6H
NDUFAB1ENSG00000004779.5530.080201291.88580-1.2852017.7131016.25560HepG2SUPV3L1
NDUFAB1ENSG00000004779.51080.485202035.75580-0.9139024.8012023.35060HepG2TAF15
NDUFAB1ENSG00000004779.5654.54210834.80020-0.350902.308701.63830HepG2TARDBP
NDUFAB1ENSG00000004779.51234.880401870.68710-0.599209.185307.67980HepG2TIA1
NDUFAB1ENSG00000004779.5743.296501052.23090-0.501402.088201.64120HepG2TIAL1
NDUFAB1ENSG00000004779.51463.441101996.33770-0.448003.371202.44770HepG2UBE2L3
NDUFAB1ENSG00000004779.51130.67970763.089100.567204.763003.76130HepG2UCHL5
NDUFAB1ENSG00000004779.5926.730201124.71900-0.279302.891402.17940HepG2UPF1
NDUFAB1ENSG00000004779.5559.94540847.29180-0.597602.845702.16640HepG2ZC3H8
NDUFAB1ENSG00000004779.51112.730201477.05850-0.408603.370602.00400K562ABCF1
NDUFAB1ENSG00000004779.51591.916401184.889400.425906.872706.03560K562AGGF1
NDUFAB1ENSG00000004779.51683.059201302.077700.370203.566202.41410K562AKAP8
NDUFAB1ENSG00000004779.52222.465301232.946700.8500015.8376014.05040K562AKAP8L
NDUFAB1ENSG00000004779.52612.247103541.27880-0.439002.878402.28070K562AQR
NDUFAB1ENSG00000004779.51668.078501293.687300.366604.746303.51520K562ATP5C1
NDUFAB1ENSG00000004779.5429.54750688.77780-0.681202.987802.07950K562BOP1
NDUFAB1ENSG00000004779.5381.25570551.20800-0.531803.834802.55130K562CCAR1
NDUFAB1ENSG00000004779.5473.75870732.42050-0.628503.079802.25260K562CPSF6
NDUFAB1ENSG00000004779.52915.890403492.04760-0.260103.041802.02080K562CELF1
NDUFAB1ENSG00000004779.5373.63270617.05810-0.723806.425804.28600K562DHX30
NDUFAB1ENSG00000004779.51827.131801326.641200.461707.518905.94670K562DKC1
NDUFAB1ENSG00000004779.5400.60990592.74270-0.565204.303202.60160K562DNAJC21
NDUFAB1ENSG00000004779.51170.206801435.90860-0.295202.987801.72310K562EIF2S1
NDUFAB1ENSG00000004779.51329.267601847.98580-0.475307.809806.69220K562EIF2S2
NDUFAB1ENSG00000004779.5285.83120560.68140-0.972006.348504.77250K562EIF3A
NDUFAB1ENSG00000004779.5893.663801092.48010-0.289802.494201.73790K562EIF3G
NDUFAB1ENSG00000004779.5947.243601365.76860-0.527905.673104.50210K562EIF4A3
NDUFAB1ENSG00000004779.52419.192902839.74310-0.231202.858801.90510K562EIF4G2
NDUFAB1ENSG00000004779.51448.568301061.908500.447903.820802.81390K562FIP1L1
NDUFAB1ENSG00000004779.5494.22680745.11980-0.592302.739601.89030K562FMR1
NDUFAB1ENSG00000004779.5425.04690631.51250-0.571202.937301.99370K562FTO
NDUFAB1ENSG00000004779.5946.196301288.46990-0.445405.365002.69550K562FUBP3
NDUFAB1ENSG00000004779.51714.157301420.341000.271202.904102.28660K562FXR1
NDUFAB1ENSG00000004779.5476.37790699.32290-0.553902.617201.84310K562GPKOW
NDUFAB1ENSG00000004779.5534.86250971.27480-0.8607012.1849011.00660K562HNRNPC
NDUFAB1ENSG00000004779.5681.05700867.55070-0.349202.607501.50260K562HNRNPF
NDUFAB1ENSG00000004779.51544.73810873.515800.822407.055305.46250K562HNRNPM
NDUFAB1ENSG00000004779.51703.858002226.00010-0.385605.239903.99620K562HNRNPU
NDUFAB1ENSG00000004779.5377.63800597.02550-0.660802.734101.80750K562KRR1
NDUFAB1ENSG00000004779.51633.810601252.514600.383303.665302.37000K562MAK16
NDUFAB1ENSG00000004779.51783.725701465.757300.283102.652401.76620K562MBNL1
NDUFAB1ENSG00000004779.51075.822201399.12710-0.379105.068604.00000K562MTPAP
NDUFAB1ENSG00000004779.51569.295901027.394500.611004.935503.64520K562NAA15
NDUFAB1ENSG00000004779.51091.380001554.45190-0.5103011.249709.88580K562NSUN2
NDUFAB1ENSG00000004779.51981.049301205.592900.7164010.170308.31600K562PPIG
NDUFAB1ENSG00000004779.51684.231801090.571000.626907.517906.28060K562PRPF8
NDUFAB1ENSG00000004779.52446.205603228.97740-0.400507.077205.51500K562PUM2
NDUFAB1ENSG00000004779.52133.202801222.633500.8029012.4136011.31050K562PUS1
NDUFAB1ENSG00000004779.52008.194901191.364400.7532016.9172015.43220K562RBM15
NDUFAB1ENSG00000004779.51092.367901534.00200-0.489803.822302.87250K562SF3A3
NDUFAB1ENSG00000004779.5455.89300664.92940-0.544502.673301.71560K562SF3B1
NDUFAB1ENSG00000004779.5437.72190607.13450-0.472003.268601.88250K562SLBP
NDUFAB1ENSG00000004779.5586.41790753.47620-0.361602.320101.39930K562SRFBP1
NDUFAB1ENSG00000004779.51316.080301571.63220-0.256003.026702.05330K562SRPK2
NDUFAB1ENSG00000004779.51128.942701429.95080-0.341002.640801.61970K562SRSF5
NDUFAB1ENSG00000004779.52124.813502703.29510-0.347404.264202.42580K562SUCLG1
NDUFAB1ENSG00000004779.5850.811901495.33390-0.813603.585001.88740K562SUPT6H
NDUFAB1ENSG00000004779.5573.154401056.15470-0.881808.353406.55020K562SUPV3L1
NDUFAB1ENSG00000004779.5521.92450837.63280-0.682506.196004.74050K562TIAL1
NDUFAB1ENSG00000004779.5541.87010890.17720-0.716107.912506.11860K562TRIM56
NDUFAB1ENSG00000004779.52509.045403493.58080-0.477607.136404.99580K562UBE2L3
NDUFAB1ENSG00000004779.5760.107701117.68650-0.556204.574603.23210K562UCHL5
NDUFAB1ENSG00000004779.51020.893701648.22650-0.6911013.7021012.24970K562UPF1
NDUFAB1ENSG00000004779.5983.644801410.32200-0.519806.169704.83080K562WDR3
NDUFAB1ENSG00000004779.51123.525901466.66350-0.384505.880804.69660K562WDR43
NDUFAB1ENSG00000004779.52953.513003989.84720-0.433903.436602.45770K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDUFAB1 is not available on ENCORE database.





1 RBPs can affect the splicing of NDUFAB1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXENDUFAB1ENSG00000004779.5chr16-2359359623593696235985172359864023592322235924942360744323607677-0.079000.002340.018992includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDUFAB1 is not avaliable on ENCORE database.