CCDC41

General Information

Gene Name       : CCDC41
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC41)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC41 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC41 RNA is bound by 17 proteins.  







eCLIP assay for CCDC41 is not avaliable on ENCORE database.





17 proteins are bound to CCDC41 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr129480629694806357-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.900533.32022K562UCHL5
chr129470036194700412-3'-UTR,intron-Distal4.706664.79708HepG2U2AF2
chr129470672894706785-3'-UTR,CDS,intron-Distal4.345844.21675K562ZNF622
chr129476157394761675-CDS,intron-Distal3.597455.65306K562ZNF622
chr129476156894761669-CDS,intron-Distal,intron-Proximal3.589068.44067K562UCHL5
chr129477257394772638-CDS,intron-Distal4.819615.10960K562ZNF622
chr129477273194772822-CDS,intron-Distal,intron-Proximal4.2893310.57284K562UCHL5
chr129479691794796987-CDS,intron-Distal,intron-Proximal4.776505.68196HepG2BCLAF1
chr129476966294769700-CDS,intron-Distal4.319363.71570HepG2BCLAF1
chr129472547694725563-CDS,intron-Distal3.655754.80912HepG2PPIG
chr129477273394772819-CDS,intron-Distal,intron-Proximal6.0030814.96864HepG2BCLAF1
chr129479462594794693-CDS,intron-Distal,intron-Proximal5.315898.41647HepG2BCLAF1
chr129476157294761637-CDS,intron-Distal4.369844.16554HepG2PPIG
chr129479474394794833-CDS,intron-Distal,intron-Proximal4.5012417.49466K562KHSRP
chr129479698794797039-CDS,intron-Distal,intron-Proximal3.381363.27569HepG2BCLAF1
chr129477275794772819-CDS,intron-Distal,intron-Proximal4.067323.12746HepG2GRWD1
chr129472547294725594-CDS,intron-Distal,intron-Proximal4.948114.42734K562UCHL5
chr129472940594729440-CDS,intron-Distal4.261623.45943HepG2BCLAF1
chr129476160594761711-CDS,intron-Distal3.312703.13705K562BUD13
chr129474549294745579-intron-Distal5.588098.13679K562HNRNPM
chr129473660194736807-intron-Distal4.623977.17304K562KHSRP
chr129474537194745451-intron-Distal5.469905.57532K562HNRNPM
chr129479490394794977-intron-Distal,intron-Proximal4.482086.07567K562KHSRP
chr129473458594734661-intron-Distal3.733885.53782HepG2PTBP1
chr129482702194827129-intron-Distal3.972103.03891HepG2PTBP1
chr129482703294827108-intron-Distal3.793324.22415K562PTBP1
chr129474551194745647-intron-Distal4.0762210.69077HepG2HNRNPM
chr129474569994745735-intron-Distal4.177543.01445K562EXOSC5
chr129482948694829625-intron-Distal4.150193.78162K562HNRNPM
chr129473148694731604-intron-Distal3.939266.70726K562MATR3
chr129478564194785709-intron-Distal4.743985.76685K562EXOSC5
chr129474553294745595-intron-Distal4.076988.78073K562EXOSC5
chr129482916894829248-intron-Distal,intron-Proximal4.470025.12432K562EXOSC5
chr129478464894784712-intron-Distal3.820743.33944K562MATR3
chr129483280894832845-intron-Distal4.214543.01456K562EXOSC5
chr129473147894731591-intron-Distal3.908946.84523K562PTBP1
chr129478417194784253-intron-Distal4.394493.59909K562EXOSC5
chr129471207694712201-intron-Distal3.948703.74251K562SAFB2
chr129474526194745338-intron-Distal5.436077.12711K562HNRNPM
chr129483195394831999-intron-Distal4.546025.44508K562EXOSC5
chr129474136794741440-intron-Distal4.527656.09994K562KHSRP
chr129479666094796678-intron-Distal,intron-Proximal4.244124.95101HepG2HNRNPC
chr129474559594745647-intron-Distal3.965794.91037K562EXOSC5
chr129474672894746809-intron-Distal3.898648.47709K562EXOSC5
chr129473206894732145-intron-Distal3.430984.81844HepG2SUGP2
chr129478736194787420-intron-Distal4.509025.44433K562EXOSC5
chr129473148694731671-intron-Distal3.255624.59863HepG2PTBP1
chr129474738894747430-intron-Distal4.667985.12361K562EXOSC5
chr129479605694796132-intron-Distal,intron-Proximal5.477619.95323HepG2U2AF2
chr129479685894796927-intron-Distal,intron-Proximal3.639914.35635K562PRPF8
chr129476896794769022-intron-Distal4.609563.91475K562PTBP1
chr129473456894734662-intron-Distal5.441058.93487K562PTBP1
chr129475361294753662-intron-Distal3.385063.72904K562EXOSC5
chr129474543394745469-intron-Distal4.304824.48623K562EXOSC5
chr129474746094747508-intron-Distal4.457254.48623K562EXOSC5
chr129474552894745589-intron-Distal4.576485.15027HepG2MATR3
chr129479662894796660-intron-Distal,intron-Proximal4.367995.19287HepG2HNRNPC
chr129474144094741531-intron-Distal4.876317.00634K562KHSRP
chr129472663194726810-intron-Distal3.889803.25538K562KHSRP
chr129478554394785590-intron-Distal4.175956.71225K562EXOSC5
chr129481874194818819-intron-Distal6.024568.19722HepG2PCBP2
chr129482351394823647-intron-Distal4.421934.02846K562HNRNPM
chr129479662694796682-intron-Distal,intron-Proximal3.542403.03613K562HNRNPC
chr129474524994745354-intron-Distal5.079887.51573HepG2HNRNPM
chr129474557994745651-intron-Distal5.8240410.53056K562HNRNPM
chr129480446594804559-intron-Distal3.778043.45805K562KHSRP
chr129474666094746697-intron-Distal3.534544.02190K562EXOSC5
chr129474541594745468-intron-Distal3.716974.87260HepG2HNRNPM
chr129474520394745261-intron-Distal4.623423.28572K562HNRNPM
chr129476201394762111-intron-Distal,intron-Proximal3.366074.10408K562KHSRP
chr129474523694745318-intron-Distal5.307477.71312K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC41 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC41 is not available on ENCORE database.

  • 87 RBPs can affect the levels of CCDC41.  








The Knockdown/knockout RNA-Seq assay for CCDC41 is not available on ENCORE database.





87 RBPs can affect the gene expression of CCDC41 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC41ENSG00000173588.10346.37590222.174400.640503.056002.49990HepG2AKAP1
CCDC41ENSG00000173588.10205.90400299.04280-0.538402.622702.03800HepG2BOP1
CCDC41ENSG00000173588.10261.16360150.618600.794003.322602.47760HepG2CNOT7
CCDC41ENSG00000173588.10182.38500274.54210-0.590002.878302.17980HepG2CPSF6
CCDC41ENSG00000173588.10237.25750385.93420-0.701906.461705.39660HepG2DAZAP1
CCDC41ENSG00000173588.10133.62360212.84520-0.671602.734702.11090HepG2DDX3X
CCDC41ENSG00000173588.1096.91760182.79380-0.915403.875903.15480HepG2DDX6
CCDC41ENSG00000173588.10132.43790193.65030-0.548102.403401.74270HepG2DNAJC21
CCDC41ENSG00000173588.10106.20720175.76840-0.726802.745102.15440HepG2EIF2S1
CCDC41ENSG00000173588.10366.03550189.104500.952705.461104.51850HepG2EIF4B
CCDC41ENSG00000173588.10229.97570364.74960-0.665404.094803.11630HepG2EIF4G2
CCDC41ENSG00000173588.10339.18340454.12780-0.421002.954602.33670HepG2ETF1
CCDC41ENSG00000173588.10156.81970105.215100.575702.075701.38740HepG2FUBP3
CCDC41ENSG00000173588.10151.50590311.22740-1.038606.715105.74530HepG2GPKOW
CCDC41ENSG00000173588.10144.89570217.47700-0.585802.311701.67250HepG2HNRNPC
CCDC41ENSG00000173588.10165.85220281.95430-0.765604.550903.65710HepG2HNRNPF
CCDC41ENSG00000173588.10230.22470351.54860-0.610704.762203.89540HepG2HNRNPL
CCDC41ENSG00000173588.10151.05350297.00890-0.975406.188105.28720HepG2HNRNPLL
CCDC41ENSG00000173588.10150.05540277.64740-0.887805.989504.96480HepG2IGF2BP1
CCDC41ENSG00000173588.10254.83360382.69300-0.586604.130103.19760HepG2NOL12
CCDC41ENSG00000173588.10167.45280263.34610-0.653202.888102.12310HepG2NSUN2
CCDC41ENSG00000173588.1078.08540137.65000-0.817902.506201.66920HepG2PABPC1
CCDC41ENSG00000173588.10322.48920185.241100.799706.256405.49870HepG2PTBP1
CCDC41ENSG00000173588.10168.94440365.32120-1.1126010.061109.02190HepG2PUF60
CCDC41ENSG00000173588.10285.10630387.52450-0.442802.457801.82610HepG2PUM2
CCDC41ENSG00000173588.10290.43550200.669700.533302.573401.96700HepG2QKI
CCDC41ENSG00000173588.10307.32080182.102200.754902.629301.96950HepG2RBM25
CCDC41ENSG00000173588.10346.20490206.174700.747705.222604.51750HepG2NELFE
CCDC41ENSG00000173588.10331.81230191.989100.789205.643404.80240HepG2RECQL
CCDC41ENSG00000173588.10156.18110303.69020-0.959406.805605.80280HepG2RPLP0
CCDC41ENSG00000173588.10194.13520293.98740-0.598702.971102.24000HepG2SF3B1
CCDC41ENSG00000173588.10258.60640350.30350-0.437802.672701.98080HepG2SLBP
CCDC41ENSG00000173588.10135.77990277.63880-1.031902.927001.57140HepG2SNRNP200
CCDC41ENSG00000173588.10224.49110327.10990-0.543101.984801.32820HepG2SNRNP70
CCDC41ENSG00000173588.10416.17640201.330201.047507.391506.70500HepG2SRSF1
CCDC41ENSG00000173588.10278.09340360.71160-0.375302.044101.49630HepG2SRSF5
CCDC41ENSG00000173588.10167.91670277.00070-0.722104.649203.78190HepG2SRSF7
CCDC41ENSG00000173588.10259.59020372.17270-0.519703.843503.26140HepG2SSB
CCDC41ENSG00000173588.10125.09680257.78450-1.043104.867304.00920HepG2SUPV3L1
CCDC41ENSG00000173588.10345.91080180.916800.935008.061907.18500HepG2TAF15
CCDC41ENSG00000173588.10165.27730289.45850-0.808504.719803.80740HepG2TARDBP
CCDC41ENSG00000173588.10255.36010166.287400.618803.308702.39890HepG2TIA1
CCDC41ENSG00000173588.10126.06140209.87360-0.735403.944603.36990HepG2TIAL1
CCDC41ENSG00000173588.10230.18120356.91720-0.632803.937602.87240HepG2TUFM
CCDC41ENSG00000173588.10145.55380323.52920-1.152303.150602.09720HepG2U2AF2
CCDC41ENSG00000173588.10333.72010221.294200.592603.860003.17070HepG2UTP3
CCDC41ENSG00000173588.10405.16330210.231200.946403.597702.13760HepG2XRCC5
CCDC41ENSG00000173588.10165.81240252.08780-0.604403.797203.18390HepG2ZNF622
CCDC41ENSG00000173588.10342.81240709.46840-1.0493011.4103010.35250K562AGGF1
CCDC41ENSG00000173588.10585.70490779.53840-0.412403.199802.12670K562AKAP8
CCDC41ENSG00000173588.10458.96730738.21920-0.685703.935303.15510K562AKAP8L
CCDC41ENSG00000173588.10573.518101029.70870-0.844309.910808.90490K562AQR
CCDC41ENSG00000173588.10315.73470488.90860-0.630904.284803.19120K562BOP1
CCDC41ENSG00000173588.10137.63670202.33190-0.555902.241101.31000K562CCAR1
CCDC41ENSG00000173588.10534.31240818.55930-0.615403.028901.91130K562CNOT7
CCDC41ENSG00000173588.10351.40450519.83980-0.564904.431603.43900K562CPSF6
CCDC41ENSG00000173588.10281.10510427.30790-0.604204.989403.05250K562DDX6
CCDC41ENSG00000173588.10660.88400794.46950-0.265602.091401.34110K562DKC1
CCDC41ENSG00000173588.10256.38000479.60380-0.903607.882106.27300K562EFTUD2
CCDC41ENSG00000173588.10332.31350462.94130-0.478303.791802.35630K562EIF2S1
CCDC41ENSG00000173588.10551.92890754.49740-0.451004.264303.40010K562EIF2S2
CCDC41ENSG00000173588.10292.93950396.53680-0.436902.859001.68000K562EIF4B
CCDC41ENSG00000173588.10375.02560599.09500-0.675805.915104.64130K562FIP1L1
CCDC41ENSG00000173588.10266.68030528.94460-0.988009.829208.16760K562FMR1
CCDC41ENSG00000173588.10306.41170448.33690-0.549103.259402.26020K562FTO
CCDC41ENSG00000173588.10249.86340496.31080-0.9901010.052708.52700K562GPKOW
CCDC41ENSG00000173588.10455.26440697.06440-0.614602.458101.32970K562HNRNPA2B1
CCDC41ENSG00000173588.10171.47350457.22470-1.4149016.9975015.59820K562HNRNPC
CCDC41ENSG00000173588.10290.13740408.28120-0.492802.761501.61990K562HNRNPF
CCDC41ENSG00000173588.10688.16210862.16190-0.325202.299901.34700K562HNRNPL
CCDC41ENSG00000173588.10378.31120600.14000-0.665704.592603.13480K562IGF2BP2
CCDC41ENSG00000173588.10559.63990783.48700-0.485404.169103.12990K562KIF1C
CCDC41ENSG00000173588.10535.48750749.94780-0.485903.916802.56430K562MAK16
CCDC41ENSG00000173588.10415.19490629.87570-0.601303.819002.71980K562MATR3
CCDC41ENSG00000173588.10327.09010484.45820-0.566704.080703.00250K562METAP2
CCDC41ENSG00000173588.10412.42780615.19680-0.576903.303702.32350K562NAA15
CCDC41ENSG00000173588.10325.15020439.69080-0.435402.677501.46830K562NCBP2
CCDC41ENSG00000173588.10329.90920472.45010-0.518102.903601.57000K562NONO
CCDC41ENSG00000173588.10509.76640705.72510-0.469305.449104.45470K562NSUN2
CCDC41ENSG00000173588.10532.36310786.39460-0.562803.179001.84150K562PABPC1
CCDC41ENSG00000173588.10248.18820609.79750-1.296907.890605.91260K562PABPN1
CCDC41ENSG00000173588.10327.63490446.37710-0.446202.777601.35130K562PHF6
CCDC41ENSG00000173588.10471.48300680.07260-0.528504.268903.21820K562PPIG
CCDC41ENSG00000173588.10393.08170725.04380-0.883203.959702.10140K562PPP1R8
CCDC41ENSG00000173588.10344.84060466.70850-0.436602.153901.48870K562PRPF8
CCDC41ENSG00000173588.10371.88590613.12410-0.721305.296704.40320K562PTBP1
CCDC41ENSG00000173588.101205.242301449.34320-0.266102.395201.50070K562PUM2
CCDC41ENSG00000173588.10481.20130732.21680-0.605605.152304.43960K562PUS1
CCDC41ENSG00000173588.10459.58630713.34720-0.634307.164206.24080K562RBM15
CCDC41ENSG00000173588.10379.87360588.11780-0.630604.029702.99640K562RBM22
CCDC41ENSG00000173588.10337.92800557.71190-0.722802.419601.32580K562SF1
CCDC41ENSG00000173588.10432.64430696.36330-0.686708.786407.39010K562SF3A3
CCDC41ENSG00000173588.10321.44630472.03920-0.554303.190002.14310K562SF3B1
CCDC41ENSG00000173588.10305.79970640.44110-1.066505.359103.46960K562SNRNP200
CCDC41ENSG00000173588.10425.64660601.02390-0.497802.406401.73920K562SRSF1
CCDC41ENSG00000173588.10394.09170567.51750-0.526102.787401.73450K562SRSF5
CCDC41ENSG00000173588.10404.35070531.24320-0.393803.191001.93040K562SRSF7
CCDC41ENSG00000173588.10308.33190451.93600-0.551603.016601.95340K562SUPV3L1
CCDC41ENSG00000173588.10284.80870608.36620-1.094907.615906.37520K562TARDBP
CCDC41ENSG00000173588.10262.01710411.93130-0.652703.861001.87750K562TFIP11
CCDC41ENSG00000173588.10396.18110586.81400-0.566703.724002.75510K562TIA1
CCDC41ENSG00000173588.10188.95740394.30100-1.061208.615606.89270K562TIAL1
CCDC41ENSG00000173588.10387.83710575.62410-0.569703.445802.19980K562TRA2A
CCDC41ENSG00000173588.10248.80800418.86240-0.751404.528203.25140K562TRIM56
CCDC41ENSG00000173588.10540.50090726.74510-0.427204.068202.52600K562TROVE2
CCDC41ENSG00000173588.10299.00760478.28790-0.677704.742303.36940K562UCHL5
CCDC41ENSG00000173588.10603.43450748.29490-0.310402.643901.94150K562UPF1
CCDC41ENSG00000173588.10490.82080742.28440-0.596802.810901.50330K562UTP18
CCDC41ENSG00000173588.10496.20110640.29290-0.367802.487301.65500K562WDR3
CCDC41ENSG00000173588.10759.054901160.05500-0.611907.160105.65980K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC41 is not available on ENCORE database.





11 RBPs can affect the splicing of CCDC41 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCDC41ENSG00000173588.10chr12-9472198094722084947066899470679394725475947256050.151000.000050.01486includedK562FTO
SECCDC41ENSG00000173588.10chr12-9476048994760610947293649472944094761569947617190.330000.000130.02630includedK562MATR3
SECCDC41ENSG00000173588.10chr12-947946259479475794772566947728189479694594797038-0.121000.007630.08557excludedK562PUS1
SECCDC41ENSG00000173588.10chr12-9472198094722084947066899470679394725475947256050.231000.000080.00692includedHepG2SFPQ
SECCDC41ENSG00000173588.10chr12-948290509482910394806093948063679485333294853728-0.490000.001160.05713excludedK562EFTUD2
SECCDC41ENSG00000173588.10chr12-947946259479475794772566947728189480547294805623-0.385000.000070.00449excludedK562UTP18
SECCDC41ENSG00000173588.10chr12-9480439694804455947969459479703894805472948056230.331000.000000.00002includedK562TARDBP
SECCDC41ENSG00000173588.10chr12-9472198094722084947066899470679394725475947256050.096000.002070.07023includedK562SF3B1
SECCDC41ENSG00000173588.10chr12-9476048994760610947293649472944094761569947617190.249000.000770.03680includedK562HNRNPK
SECCDC41ENSG00000173588.10chr12-9479602694796110947946799479475794796945947970380.254000.001640.05868includedK562PTBP1
A3SSCCDC41ENSG00000173588.10chr12-9476183294762004947618329476197794763697947638290.085000.019040.09142longerK562AQR
A5SSCCDC41ENSG00000173588.10chr12-9472723994727407947272579472740794725475947256050.113000.000600.06424longerK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC41 is not avaliable on ENCORE database.