KCNK1

General Information

Gene Name       : KCNK1
Gene ID             : ENSG00000135750.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KCNK1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KCNK1ENSG00000135750.146.708.357.53ENCSR000AEF
HepG2KCNK1ENSG00000135750.140.000.010.01ENCSR985KAT
K562KCNK1ENSG00000135750.146.744.995.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KCNK1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KCNK1 RNA is bound by 6 proteins.  







eCLIP assay for KCNK1 is not avaliable on ENCORE database.





6 proteins are bound to KCNK1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1233807493233807500+3'-UTR6.1855410.57524K562TROVE2
chr1233807832233807883+3'-UTR4.940289.35741K562PUM2
chr1233807500233807554+3'-UTR7.2212921.13315K562TROVE2
chr1233749893233750059+5'-UTR,CDS3.337457.19592K562FTO
chr1233749885233749948+5'-UTR,CDS3.6419910.22929K562RBM15
chr1233807228233807266+CDS3.912383.48187K562RBM15
chr1233750030233750087+CDS4.097006.04229K562RBM15
chr1233749948233749994+CDS3.708907.09919K562RBM15
chr1233750103233750180+CDS4.326527.03491K562RBM15
chr1233764621233764713+intron-Distal4.298184.13641K562TARDBP
chr1233798010233798075+intron-Distal3.938938.63540K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KCNK1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KCNK1 is not available on ENCORE database.

  • 25 RBPs can affect the levels of KCNK1.  








The Knockdown/knockout RNA-Seq assay for KCNK1 is not available on ENCORE database.





25 RBPs can affect the gene expression of KCNK1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KCNK1ENSG00000135750.10257.29640173.233300.570602.730601.55810K562AARS
KCNK1ENSG00000135750.10332.84000234.440800.505502.494001.33970K562ABCF1
KCNK1ENSG00000135750.10537.18290323.814500.730106.637505.59260K562AKAP8L
KCNK1ENSG00000135750.10219.36420413.26770-0.913706.544505.70480K562AQR
KCNK1ENSG00000135750.10496.80380339.761700.548104.762003.52830K562ATP5C1
KCNK1ENSG00000135750.10246.89220168.961700.547102.619501.35110K562BCCIP
KCNK1ENSG00000135750.10233.47570163.290700.515702.429101.53150K562BCLAF1
KCNK1ENSG00000135750.10536.88810352.532300.606804.156102.57310K562CIRBP
KCNK1ENSG00000135750.10230.56640143.155600.687504.120202.48680K562DDX27
KCNK1ENSG00000135750.10122.53920190.58760-0.637202.850602.04250K562EIF3G
KCNK1ENSG00000135750.10314.51970218.941000.522503.010101.64870K562EWSR1
KCNK1ENSG00000135750.10208.79430331.46790-0.666803.961203.05920K562GRSF1
KCNK1ENSG00000135750.10149.41180228.49100-0.612802.660301.87940K562HSPD1
KCNK1ENSG00000135750.10467.79020328.913500.508102.579401.59920K562IGF2BP2
KCNK1ENSG00000135750.10219.36290344.99020-0.653204.658603.43110K562MATR3
KCNK1ENSG00000135750.10284.02700440.62120-0.633504.519003.07300K562MSI2
KCNK1ENSG00000135750.10158.61950250.44970-0.659003.511502.11430K562NCBP2
KCNK1ENSG00000135750.10328.09250451.03240-0.459102.153801.43490K562PUF60
KCNK1ENSG00000135750.10352.86550470.04920-0.413702.942101.95440K562PUM2
KCNK1ENSG00000135750.10469.86860321.126600.549003.267602.68560K562PUS1
KCNK1ENSG00000135750.10385.74560256.227000.590104.802303.61160K562SRPK2
KCNK1ENSG00000135750.10240.27390329.25100-0.454502.321301.66670K562SRSF1
KCNK1ENSG00000135750.10204.51590131.266900.639602.573401.59700K562SUPV3L1
KCNK1ENSG00000135750.10114.90660180.41390-0.650802.772301.95200K562SYNCRIP
KCNK1ENSG00000135750.10131.88000254.05700-0.945904.028002.03110K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KCNK1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of KCNK1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for KCNK1 is not avaliable on ENCORE database.