TPD52L1

General Information

Gene Name       : TPD52L1
Gene ID             : ENSG00000111907.20
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TPD52L1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TPD52L1ENSG00000111907.200.000.020.01ENCSR000AEF
HepG2TPD52L1ENSG00000111907.200.680.690.69ENCSR985KAT
K562TPD52L1ENSG00000111907.2070.3469.5469.94ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TPD52L1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TPD52L1 RNA is bound by 17 proteins.  







eCLIP assay for TPD52L1 is not avaliable on ENCORE database.





17 proteins are bound to TPD52L1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6125584424125584495+3'-UTR4.069256.93197HepG2SUB1
chr6125584095125584124+3'-UTR,CDS5.1195725.67095K562YBX3
chr6125584429125584500+3'-UTR4.2170934.28091K562PUM2
chr6125584072125584095+3'-UTR,CDS3.500337.36929K562YBX3
chr6125584337125584405+3'-UTR4.136844.24775K562IGF2BP2
chr6125584124125584145+3'-UTR4.5981723.23964K562YBX3
chr6125584053125584125+3'-UTR,CDS3.180704.14964K562UPF1
chr6125584271125584329+3'-UTR5.457748.37653K562IGF2BP1
chr6125584329125584406+3'-UTR3.830058.60010K562IGF2BP1
chr6125541227125541338+3'-UTR,5'-UTR,CDS4.193853.81597K562RBM15
chr6125584347125584429+3'-UTR4.8448042.70759K562PUM2
chr6125584496125584542+3'-UTR3.041245.90738K562UPF1
chr6125584145125584151+3'-UTR4.0404912.95731K562YBX3
chr6125584151125584214+3'-UTR3.090126.24698K562YBX3
chr6125474958125475117+5'-UTR,CDS,intron-Distal,intron-Proximal4.670469.36623K562DDX3X
chr6125578259125578306+CDS,intron-Distal,intron-Proximal3.908933.53569K562LIN28B
chr6125550262125550334+CDS,intron-Proximal3.8607010.23390K562YBX3
chr6125569466125569530+CDS,intron-Proximal3.167904.38893K562ZNF800
chr6125493370125493449+intron-Distal5.577709.44534K562PTBP1
chr6125582197125582327+intron-Distal3.778373.22063K562TRA2A
chr6125491063125491144+intron-Distal3.917073.47525K562MATR3
chr6125490318125490406+intron-Distal3.439264.73075K562MATR3
chr6125493449125493500+intron-Distal4.8855311.02443K562PTBP1
chr6125569590125569725+intron-Distal,intron-Proximal3.153424.10408K562KHSRP
chr6125501684125501761+intron-Distal4.511864.04407K562HNRNPL
chr6125479582125479657+intron-Distal4.509635.41154K562HNRNPL
chr6125475898125475994+intron-Distal4.611796.32269K562CSTF2T
chr6125562386125562492+intron-Distal4.758274.80399K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TPD52L1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TPD52L1 is not available on ENCORE database.

  • 43 RBPs can affect the levels of TPD52L1.  








The Knockdown/knockout RNA-Seq assay for TPD52L1 is not available on ENCORE database.





43 RBPs can affect the gene expression of TPD52L1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TPD52L1ENSG00000111907.1614.354003.019602.248902.123101.38510HepG2DDX19B
TPD52L1ENSG00000111907.160.434609.25890-4.412902.317901.68950HepG2DDX21
TPD52L1ENSG00000111907.1612.890101.310203.298302.412001.89530HepG2PTBP1
TPD52L1ENSG00000111907.1646.989809.137502.362406.707805.68000HepG2PUM2
TPD52L1ENSG00000111907.1621.236901.366803.957704.085403.38990HepG2SF3B4
TPD52L1ENSG00000111907.1611.809201.158803.349102.359901.84250HepG2SRSF9
TPD52L1ENSG00000111907.1617.647201.618803.446302.993701.61290HepG2SUGP2
TPD52L1ENSG00000111907.163426.676002274.942400.5909017.2928015.99500K562AGGF1
TPD52L1ENSG00000111907.16737.19960979.69740-0.410304.599702.61520K562AKAP1
TPD52L1ENSG00000111907.161191.673401578.96460-0.406003.532802.88560K562AQR
TPD52L1ENSG00000111907.163185.504202483.814000.358904.872203.62210K562ATP5C1
TPD52L1ENSG00000111907.161226.75110987.395400.313003.514502.14520K562DDX21
TPD52L1ENSG00000111907.16870.14210695.780500.322502.933801.56750K562DDX27
TPD52L1ENSG00000111907.163020.619302547.129300.245903.094602.16050K562DKC1
TPD52L1ENSG00000111907.16811.487001037.10480-0.353902.627401.82880K562EIF4A3
TPD52L1ENSG00000111907.161689.465502026.52510-0.262403.174102.17050K562EIF4G2
TPD52L1ENSG00000111907.16549.54670809.01100-0.557904.611603.50410K562FMR1
TPD52L1ENSG00000111907.16855.674701078.54510-0.334003.248702.60150K562FXR1
TPD52L1ENSG00000111907.162056.761701399.571100.555307.184005.95490K562GRSF1
TPD52L1ENSG00000111907.16589.23790946.43280-0.683608.047907.07960K562HNRNPC
TPD52L1ENSG00000111907.16626.45110845.30480-0.432303.529602.22990K562HNRNPF
TPD52L1ENSG00000111907.16767.853401054.39510-0.457503.393002.00860K562HNRNPK
TPD52L1ENSG00000111907.16982.039201398.19950-0.509704.894403.44280K562HNRNPL
TPD52L1ENSG00000111907.161202.22860713.673800.752307.025505.43560K562HNRNPM
TPD52L1ENSG00000111907.161865.039301176.411300.664708.630607.24300K562HSPD1
TPD52L1ENSG00000111907.163155.323202404.777400.391804.918703.35670K562MAK16
TPD52L1ENSG00000111907.16538.39350740.99650-0.460803.555202.55570K562METAP2
TPD52L1ENSG00000111907.161339.664601129.459700.246102.388401.63650K562MTPAP
TPD52L1ENSG00000111907.161429.631301254.950200.187901.996701.35050K562NSUN2
TPD52L1ENSG00000111907.162232.276201401.423000.671503.189102.10630K562PABPN1
TPD52L1ENSG00000111907.16676.71820848.61480-0.326602.211301.41090K562PSIP1
TPD52L1ENSG00000111907.161801.344902211.04410-0.295702.398501.64080K562PUF60
TPD52L1ENSG00000111907.161915.855202304.27690-0.266303.277402.23140K562PUM2
TPD52L1ENSG00000111907.163291.892302347.443800.487706.081105.31400K562PUS1
TPD52L1ENSG00000111907.162893.661302287.374600.339103.652102.98420K562RBM15
TPD52L1ENSG00000111907.16718.039301033.61830-0.525605.083703.90550K562RBM22
TPD52L1ENSG00000111907.16856.289001131.28740-0.401802.669201.68620K562RPS3
TPD52L1ENSG00000111907.16931.80540654.883600.508702.870501.51800K562RRP9
TPD52L1ENSG00000111907.161057.97640881.014600.264002.567401.44270K562SRSF7
TPD52L1ENSG00000111907.16984.95400760.598000.372803.477602.01220K562SSB
TPD52L1ENSG00000111907.16430.31360620.04740-0.527003.500102.34190K562SUPV3L1
TPD52L1ENSG00000111907.16622.53920781.68380-0.328402.365201.60630K562SYNCRIP
TPD52L1ENSG00000111907.161636.230401330.648800.298103.802002.97270K562UPF1
TPD52L1ENSG00000111907.161625.976901138.596600.514006.422505.05580K562WDR3
TPD52L1ENSG00000111907.161443.764401183.991500.286103.566102.61230K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TPD52L1 is not available on ENCORE database.





12 RBPs can affect the splicing of TPD52L1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETPD52L1ENSG00000111907.16chr6+1255748621255749011255694271255695291255782431255783040.159000.005920.08638includedK562SRSF1
SETPD52L1ENSG00000111907.16chr6+125574862125574901125569427125569529125578243125578304-0.281000.000220.00597excludedK562SF3B4
SETPD52L1ENSG00000111907.16chr6+125574862125574901125569427125569529125578243125578304-0.119000.006340.05654excludedK562AQR
SETPD52L1ENSG00000111907.16chr6+125578243125578304125569427125569529125583979125584643-0.126000.000020.00072excludedK562PUS1
SETPD52L1ENSG00000111907.16chr6+1255748621255749011255694271255695291255839791255846430.348000.000050.00198includedK562U2AF1
SETPD52L1ENSG00000111907.16chr6+1255748621255749011255694271255695291255782431255783040.304000.000740.09869includedK562FXR2
SETPD52L1ENSG00000111907.16chr6+125578243125578304125569427125569529125583979125584643-0.108000.000290.01335excludedK562UTP18
SETPD52L1ENSG00000111907.16chr6+125574862125574901125569427125569529125583979125584643-0.160000.005350.07663excludedK562U2AF2
SETPD52L1ENSG00000111907.16chr6+1255748621255749011255694271255695291255782431255783040.190000.001890.06120includedK562TARDBP
SETPD52L1ENSG00000111907.16chr6+125574862125574901125569427125569529125578243125578304-0.199000.002390.05264excludedK562RBM15
SETPD52L1ENSG00000111907.16chr6+125574862125574901125569427125569529125583979125584643-0.097000.000260.00967excludedK562AGGF1
SETPD52L1ENSG00000111907.16chr6+1255748621255749011255694271255695291255782431255783040.240000.000000.00000includedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TPD52L1 is not avaliable on ENCORE database.