MITF

General Information

Gene Name       : MITF
Gene ID             : ENSG00000187098.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MITF)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MITFENSG00000187098.150.000.040.02ENCSR000AEF
HepG2MITFENSG00000187098.150.200.150.17ENCSR985KAT
K562MITFENSG00000187098.157.7110.008.86ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MITF is not avaliable on ENCORE database.



Proteins bound to RNA
  • MITF RNA is bound by 15 proteins.  







eCLIP assay for MITF is not avaliable on ENCORE database.





15 proteins are bound to MITF RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr37000559870005692+3'-UTR,CDS,intron-Proximal3.224263.13705K562BUD13
chr37001411770014288+3'-UTR,CDS4.124263.59941K562UCHL5
chr37001731270017413+3'-UTR4.253556.89197K562PUM2
chr36999036869990476+5'-UTR,CDS,intron-Proximal4.086453.70678K562BUD13
chr36999039269990476+5'-UTR,CDS4.152333.87582K562ZNF622
chr36980785169807960+5'-UTR,intron-Distal,intron-Proximal4.657636.49093K562TARDBP
chr36986665569866725+intron-Distal3.847163.46495K562TARDBP
chr36986484969864994+intron-Distal3.414824.98593K562KHSRP
chr36978915969789219+intron-Distal3.944643.43867K562CSTF2T
chr36985022069850291+intron-Distal4.246654.79379K562KHSRP
chr36992982869929930+intron-Distal4.638857.17304K562KHSRP
chr36986476369864823+intron-Distal4.321165.28165K562CSTF2T
chr36994495869945094+intron-Distal3.864733.12825K562EIF4G2
chr36986739869867520+intron-Distal3.519573.62418K562PTBP1
chr36987006369870131+intron-Distal3.948933.87294K562TARDBP
chr36983803669838142+intron-Distal3.787743.10466K562SAFB2
chr36986688369867030+intron-Distal3.271574.56724K562KHSRP
chr36988196569882077+intron-Distal3.999784.10688K562KHSRP
chr36979566869795738+intron-Distal3.813613.22972K562TARDBP
chr36985321369853367+intron-Distal3.253853.73266K562KHSRP
chr36981413469814245+intron-Distal3.203053.27704K562HNRNPM
chr36996997469970040+intron-Distal5.450697.72091K562FMR1
chr36993947969939566+intron-Distal3.166273.40400K562HNRNPL
chr36982568269825789+intron-Distal3.042233.28806K562KHSRP
chr36982583369825891+intron-Distal3.696293.24603K562KHSRP
chr36979395369794061+intron-Distal5.198365.58608K562QKI
chr36985347969853568+intron-Distal4.050083.82619K562ILF3
chr36985346369853545+intron-Distal4.296763.76275K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MITF is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MITF is not available on ENCORE database.

  • 42 RBPs can affect the levels of MITF.  








The Knockdown/knockout RNA-Seq assay for MITF is not available on ENCORE database.





42 RBPs can affect the gene expression of MITF :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MITFENSG00000187098.1050.402203.582503.814307.787506.94360HepG2AKAP1
MITFENSG00000187098.1029.643003.430303.111204.349403.57950HepG2DDX3X
MITFENSG00000187098.103.1046018.43880-2.570302.340101.44190HepG2DDX59
MITFENSG00000187098.1015.339103.128702.293501.891601.35910HepG2EIF4A3
MITFENSG00000187098.1038.0381014.660701.375402.007701.34650HepG2FIP1L1
MITFENSG00000187098.1024.058501.240104.277904.797703.45340HepG2GNB2L1
MITFENSG00000187098.102.5975018.41110-2.825402.550501.93380HepG2GPKOW
MITFENSG00000187098.103.8147017.56960-2.203501.867501.34050HepG2HNRNPLL
MITFENSG00000187098.10444.9332010.371005.4229012.1128011.18610HepG2RBM22
MITFENSG00000187098.1069.9874011.713902.578809.100908.33670HepG2SRFBP1
MITFENSG00000187098.1019.398603.920402.306802.234801.79780HepG2SRSF1
MITFENSG00000187098.1076.3603018.707902.029102.421901.49170HepG2SRSF3
MITFENSG00000187098.1023.917803.151102.924103.767003.08530HepG2UTP3
MITFENSG00000187098.10445.27110689.57460-0.631005.289704.52360K562AQR
MITFENSG00000187098.10638.01230468.580100.445202.766801.89330K562BOP1
MITFENSG00000187098.10651.78580466.080300.483704.185002.31490K562CEBPZ
MITFENSG00000187098.10664.63730819.85770-0.302802.311101.30880K562CPEB4
MITFENSG00000187098.101769.73630848.457701.0605034.0835032.06830K562DDX47
MITFENSG00000187098.10478.33040610.06870-0.351002.114301.47140K562EIF2S2
MITFENSG00000187098.10499.06800248.903601.003503.824302.61840K562EIF3A
MITFENSG00000187098.10509.70160383.904900.408802.467101.71490K562EIF3G
MITFENSG00000187098.10601.86460424.170300.504704.087202.51170K562EXOSC5
MITFENSG00000187098.10672.42590506.958400.407402.619001.78750K562FMR1
MITFENSG00000187098.10626.60450813.07800-0.375801.991601.34450K562GRSF1
MITFENSG00000187098.10298.91880397.91110-0.412702.173901.63640K562HNRNPC
MITFENSG00000187098.10671.56030543.528700.305102.132101.34930K562HNRNPU
MITFENSG00000187098.10565.47720406.192000.477202.325501.47790K562KRR1
MITFENSG00000187098.10771.90480594.596000.376404.019903.13880K562NSUN2
MITFENSG00000187098.10499.25210640.14520-0.358602.529801.89100K562PTBP1
MITFENSG00000187098.101402.046501009.523600.473805.473703.93050K562PUM1
MITFENSG00000187098.101286.09290944.290600.445603.631903.02160K562PUS1
MITFENSG00000187098.101222.41530920.070900.409804.587003.84270K562RBM15
MITFENSG00000187098.10417.28890613.92790-0.557004.511303.40790K562RBM22
MITFENSG00000187098.10552.21850415.409000.410602.002401.31340K562RPS19
MITFENSG00000187098.10507.78030368.796300.461302.953101.83560K562SAFB
MITFENSG00000187098.10910.51750586.694400.634008.885207.48260K562SF3A3
MITFENSG00000187098.10627.46570478.051100.392303.205501.94180K562SRSF7
MITFENSG00000187098.10264.41250639.12920-1.273307.756005.11580K562STIP1
MITFENSG00000187098.10700.69430415.106800.755204.427603.38290K562SYNCRIP
MITFENSG00000187098.10388.50070635.15200-0.709206.455105.33300K562TARDBP
MITFENSG00000187098.10224.05610343.16080-0.615003.314202.28440K562TIAL1
MITFENSG00000187098.10942.85830630.461700.580508.512607.33640K562UPF1
MITFENSG00000187098.10848.83580560.972000.597508.992707.55790K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MITF is not available on ENCORE database.





1 RBPs can affect the splicing of MITF :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMITFENSG00000187098.10chr3+6984353769843666697886216978885269928284699285340.235000.002500.07533includedK562HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MITF is not avaliable on ENCORE database.