LINC01033

General Information

Gene Name       : LINC01033
Gene ID             : ENSG00000249069.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LINC01033)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LINC01033ENSG00000249069.76.747.517.12ENCSR000AEF
HepG2LINC01033ENSG00000249069.70.000.000.00ENCSR985KAT
K562LINC01033ENSG00000249069.717.6115.8616.73ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LINC01033 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LINC01033 RNA is bound by 19 proteins.  







eCLIP assay for LINC01033 is not avaliable on ENCORE database.





19 proteins are bound to LINC01033 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr55369895853699061+intron-Distal3.405537.62853K562EIF4G2
chr55369915553699233+intron-Distal3.6603912.67044K562TARDBP
chr55365126253651306+intron-Distal5.014997.71416K562EXOSC5
chr55367502553675102+intron-Distal3.8402916.52564K562PTBP1
chr55366031753660397+intron-Distal3.370019.01200K562SAFB2
chr55365915953659225+intron-Distal3.468279.30691K562SAFB2
chr55363199853632018+intron-Distal3.509219.11482K562SAFB2
chr55365163753651672+intron-Distal4.581215.44508K562EXOSC5
chr55367253053672553+intron-Distal3.529357.09496K562ILF3
chr55363129153631335+intron-Distal4.276388.64134K562SAFB2
chr55364933953649378+intron-Distal4.385064.48623K562EXOSC5
chr55361744153617473+intron-Distal3.731508.41385K562TARDBP
chr55366848653668528+intron-Distal3.361925.22328K562KHSRP
chr55364889453648988+intron-Distal5.081216.08869K562EXOSC5
chr55367250353672530+intron-Distal3.220046.66758K562ILF3
chr55363440553634453+intron-Distal5.322625.52072K562LARP4
chr55362775053627791+intron-Distal3.647316.13096K562SAFB2
chr55363957253639605+intron-Distal3.791413.49896K562KHDRBS1
chr55370993353710004+intron-Distal3.125927.28990K562HNRNPL
chr55363381953633879+intron-Distal4.5038611.78306K562SAFB2
chr55361967553619736+intron-Distal3.526925.28785K562KHDRBS1
chr55363321953633257+intron-Distal4.907967.51449K562SAFB2
chr55363866953638759+intron-Distal3.3008410.27875K562KHDRBS1
chr55366986453669930+intron-Distal5.149969.35615K562MATR3
chr55365547453655546+intron-Distal3.304196.13226K562SAFB2
chr55362953753629620+intron-Distal3.088768.56899K562SAFB2
chr55369352753693625+intron-Distal7.0977828.62038K562PTBP1
chr55361732353617363+intron-Distal4.379234.92524K562TARDBP
chr55363146053631546+intron-Distal3.589066.77066K562UCHL5
chr55363279753632852+intron-Distal4.196808.40926K562SAFB2
chr55369339953693461+intron-Distal4.588107.08067K562PTBP1
chr55363052153630604+intron-Distal3.017845.91094K562SAFB2
chr55366974553669789+intron-Distal3.467286.71492K562PTBP1
chr55363425553634340+intron-Distal3.548338.10604K562SAFB2
chr55363947353639538+intron-Distal3.146985.48998K562KHDRBS1
chr55363467853634709+intron-Distal4.6296113.03364K562SAFB2
chr55363037753630436+intron-Distal3.8962510.36846K562SAFB2
chr55371018253710232+intron-Distal4.532675.96177K562KHDRBS1
chr55365070553650736+intron-Distal4.068453.59909K562EXOSC5
chr55362945853629528+intron-Distal3.425999.44001K562SAFB2
chr55366043953660499+intron-Distal3.924308.07418K562SAFB2
chr55371023253710337+intron-Distal4.3802411.79444K562KHDRBS1
chr55370642353706540+intron-Distal3.700025.72692K562HNRNPK
chr55363006753630144+intron-Distal3.587264.49347K562UCHL5
chr55362948153629576+intron-Distal3.602794.88830K562KHDRBS1
chr55364942353649456+intron-Distal3.846053.01445K562EXOSC5
chr55361746953617547+intron-Distal3.136894.64795K562EIF4G2
chr55365254553652612+intron-Distal3.416464.35650K562KHSRP
chr55366846253668486+intron-Distal3.570527.93121K562KHSRP
chr55366843553668462+intron-Distal3.207306.18396K562KHSRP
chr55363470953634738+intron-Distal4.9397923.14374K562SAFB2
chr55370139253701475+intron-Distal3.4948811.60059K562PTBP1
chr55366222253662334+intron-Distal3.401386.74935K562SAFB2
chr55369897553699073+intron-Distal3.3254514.26724K562UPF1
chr55365178353651830+intron-Distal4.064766.71225K562EXOSC5
chr55363146353631536+intron-Distal4.7780113.46253K562SAFB2
chr55364070453640795+intron-Distal4.549358.35855K562ILF3
chr55366867853668728+intron-Distal3.914649.60556K562KHSRP
chr55361708153617179+intron-Distal3.684778.22913K562QKI
chr55365789553657942+intron-Distal4.442235.16344K562SAFB2
chr55365155353651588+intron-Distal4.428794.80399K562EXOSC5
chr55365357153653681+intron-Distal3.078315.73849K562SAFB2
chr55366862753668678+intron-Distal3.034105.21777K562KHSRP
chr55369346153693513+intron-Distal5.626077.91717K562PTBP1
chr55365367653653781+intron-Distal3.053834.54306K562HNRNPL
chr55366727753667336+intron-Distal3.743778.89894K562KHSRP
chr55366992253669952+intron-Distal4.635809.03914K562PTBP1
chr55364284853642923+intron-Distal4.044033.46942K562KHDRBS1
chr55363155453631608+intron-Distal4.264639.45776K562SAFB2
chr55365783953657890+intron-Distal4.054128.07418K562SAFB2
chr55367455453674635+intron-Distal4.651118.27592K562LSM11
chr55363005453630123+intron-Distal4.342254.13866K562PPIL4
chr55365949753659660+intron-Distal3.4825620.37723K562SAFB2
chr55368315153683247+intron-Distal3.923173.46495K562TARDBP
chr55363133553631378+intron-Distal3.264313.43213K562UCHL5
chr55363473853634802+intron-Distal3.8155214.95479K562SAFB2
chr55361736353617441+intron-Distal3.898158.96004K562TARDBP
chr55363160853631683+intron-Distal3.8265313.97030K562SAFB2
chr55363571753635772+intron-Distal4.504915.23912K562PPIL4
chr55365967653659727+intron-Distal3.365036.94952K562SAFB2
chr55361747353617541+intron-Distal5.2511929.93359K562TARDBP
chr55369897153699055+intron-Distal4.9747036.12043K562TARDBP
chr55363411753634152+intron-Distal4.894907.11415K562SAFB2
chr55362862053628683+intron-Distal5.2918512.23101K562SAFB2
chr55367447853674554+intron-Distal3.417003.51116K562LSM11
chr55363122253631283+intron-Distal4.1283314.54456K562SAFB2
chr55365183953651881+intron-Distal5.133517.71312K562EXOSC5
chr55363008653630145+intron-Distal3.6220111.24017K562SAFB2
chr55362487353624924+intron-Distal4.320415.63677K562PTBP1
chr55366835553668420+intron-Distal4.7456114.35264K562KHSRP
chr55363625553636336+intron-Distal4.5527311.36171K562SAFB2
chr55366986653669922+intron-Distal4.2076616.39938K562PTBP1
chr55363560053635640+intron-Distal3.082107.73338K562SAFB2
chr55362921353629245+intron-Distal3.664475.97050K562SAFB2
chr55367655453676605+intron-Distal4.1850615.86643K562AQR
chr55365084453650905+intron-Distal3.815355.80937K562EXOSC5
chr55365909153659159+intron-Distal3.3242410.12811K562SAFB2
chr55363436953634455+intron-Distal5.7848615.21943K562SAFB2
chr55362953553629592+intron-Distal3.872713.91527K562PPIL4
chr55362982653629867+intron-Distal3.205195.73849K562SAFB2
chr55362879553628862+intron-Distal3.099039.68994K562SAFB2
chr55365982353659868+intron-Distal3.384764.12241K562SAFB2
chr55363394153633988+intron-Distal3.310873.43213K562UCHL5
chr55363974753639786+intron-Distal3.332404.09325K562KHDRBS1
chr55362447053624573+intron-Distal4.169208.18327K562MATR3
chr55364114053641199+intron-Distal4.563823.82619K562ILF3
chr55363639753636457+intron-Distal3.690506.16467K562SAFB2
chr55363201853632053+intron-Distal4.5508511.78306K562SAFB2
chr55370436953704425+intron-Proximal4.1477621.58097K562AQR
chr55361682553616846+intron-Proximal4.875768.52787K562AQR
chr55361684653616875+intron-Proximal4.7452411.32600K562AQR
chr55370438053704427+intron-Proximal4.274305.35561K562RBM22
chr55370434953704369+intron-Proximal4.207608.65427K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LINC01033 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LINC01033 is not available on ENCORE database.

  • 25 RBPs can affect the levels of LINC01033.  








The Knockdown/knockout RNA-Seq assay for LINC01033 is not available on ENCORE database.





25 RBPs can affect the gene expression of LINC01033 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LINC01033ENSG00000249069.3268.89550423.93890-0.656805.505904.74870K562AGGF1
LINC01033ENSG00000249069.3318.35660465.82780-0.549203.834002.63690K562AKAP8
LINC01033ENSG00000249069.3171.61700353.08370-1.040807.454006.56670K562AQR
LINC01033ENSG00000249069.3293.10860462.83680-0.659106.062404.64360K562ATP5C1
LINC01033ENSG00000249069.3317.95320497.39610-0.645605.048403.04040K562DDX19B
LINC01033ENSG00000249069.3118.94800194.41480-0.708803.792103.04650K562DDX47
LINC01033ENSG00000249069.3282.95690474.70670-0.746507.657506.06880K562DKC1
LINC01033ENSG00000249069.3197.75260105.013300.913004.452002.95990K562FKBP4
LINC01033ENSG00000249069.3118.01920176.64070-0.581802.399701.56700K562HNRNPU
LINC01033ENSG00000249069.3336.55880468.15700-0.476102.720301.90290K562KIF1C
LINC01033ENSG00000249069.3308.85650524.45200-0.763907.255905.64980K562MBNL1
LINC01033ENSG00000249069.3214.52220367.60160-0.777004.121602.98680K562NAA15
LINC01033ENSG00000249069.3137.00400238.91150-0.802302.531801.59630K562PABPN1
LINC01033ENSG00000249069.3307.12410174.789400.813105.289903.01680K562PKM
LINC01033ENSG00000249069.368.11460143.89540-1.079004.446103.49580K562PRPF8
LINC01033ENSG00000249069.3144.48150299.71310-1.052706.103504.89300K562PUF60
LINC01033ENSG00000249069.3290.66350437.50340-0.589903.312102.72650K562PUS1
LINC01033ENSG00000249069.3275.63590426.25640-0.629004.909604.14050K562RBM15
LINC01033ENSG00000249069.3157.2062098.919300.668202.523401.57960K562RCC2
LINC01033ENSG00000249069.389.95650146.52710-0.703902.310901.56710K562RPS19
LINC01033ENSG00000249069.3103.05950159.64550-0.631402.656101.82020K562SF3B4
LINC01033ENSG00000249069.3235.90170156.575400.591203.192102.19350K562SRPK2
LINC01033ENSG00000249069.3280.15830164.191900.770805.375604.41030K562UPF1
LINC01033ENSG00000249069.3207.86060443.55260-1.093505.969003.88300K562UTP18
LINC01033ENSG00000249069.3280.49760418.28920-0.576503.916502.36990K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LINC01033 is not available on ENCORE database.





3 RBPs can affect the splicing of LINC01033 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELINC01033ENSG00000249069.3chr5+5369282653692964536167735361682853697472536976590.455000.000000.00255includedK562DROSHA
SELINC01033ENSG00000249069.3chr5+5369282653692964536167735361682853697472536976590.290000.001870.09889includedK562HNRNPUL1
SELINC01033ENSG00000249069.3chr5+536993525369961853697472536976955370428453704351-0.449000.000000.00035excludedK562HNRNPU
MXELINC01033ENSG00000249069.3chr5+53692826536929645369747253697695536911805369124753704284537043510.604000.000590.012951includedK562DROSHA

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LINC01033 is not avaliable on ENCORE database.