CTD-3214H19.4

General Information

Gene Name       : CTD-3214H19.4
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTD-3214H19.4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTD-3214H19.4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTD-3214H19.4 RNA is bound by 40 proteins.  







eCLIP assay for CTD-3214H19.4 is not avaliable on ENCORE database.





40 proteins are bound to CTD-3214H19.4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1977073657707422+3'-UTR,5'-UTR,CDS4.436957.55042HepG2PPIG
chr1977046707704696+3'-UTR,CDS,intron-Distal,intron-Proximal3.723453.05161HepG2PPIG
chr1977039077703921+3'-UTR,CDS,intron-Distal3.962487.13906K562BUD13
chr1977056197705625+3'-UTR,CDS,intron-Distal,intron-Proximal4.448779.08097K562DDX24
chr1977058857705903+3'-UTR,CDS,intron-Distal,intron-Proximal4.300459.80019K562AQR
chr1977073167707376+3'-UTR,5'-UTR,CDS3.527177.95984K562FMR1
chr1977056197705633+3'-UTR,CDS,intron-Distal,intron-Proximal3.5718610.74873K562YBX3
chr1977066357706738+3'-UTR,CDS,intron-Distal3.545588.01464K562FMR1
chr1977039357703987+3'-UTR,CDS,intron-Distal,intron-Proximal3.768273.45225K562GRWD1
chr1977068857706933+3'-UTR,CDS,intron-Proximal3.4220213.22788K562AQR
chr1977058547705890+3'-UTR,CDS,intron-Distal,intron-Proximal3.260963.44826K562METAP2
chr1977076557707708+3'-UTR,5'-UTR,CDS4.067323.14999HepG2GRWD1
chr1977073167707401+3'-UTR,5'-UTR,CDS3.231874.39148HepG2PABPN1
chr1977046037704647+3'-UTR,CDS,intron-Distal,intron-Proximal3.190916.30950K562BUD13
chr1977065917706604+3'-UTR,CDS,intron-Distal4.037233.35417K562METAP2
chr1977073637707422+3'-UTR,5'-UTR,CDS4.268247.31003K562SRSF1
chr1977067807706932+3'-UTR,CDS,intron-Distal,intron-Proximal4.4139016.99383HepG2QKI
chr1977076627707707+3'-UTR,5'-UTR,CDS3.635513.04123K562LIN28B
chr1977076807707708+3'-UTR,5'-UTR,CDS3.047513.46619K562GRWD1
chr1977078697707932+3'-UTR,5'-UTR,CDS3.187797.74926K562UCHL5
chr1977078697707931+3'-UTR,5'-UTR,CDS3.0961411.83248K562ZNF622
chr1977073157707365+3'-UTR,5'-UTR,CDS3.611066.27819HepG2PPIG
chr1977036117703661+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.1448113.98203K562PABPC4
chr1977074177707472+3'-UTR,5'-UTR,CDS,intron-Proximal4.380859.38298HepG2PRPF8
chr1977071307707166+3'-UTR,5'-UTR,CDS3.569899.73440K562LIN28B
chr1977036267703657+3'-UTR,5'-UTR,CDS,intron-Distal3.7323412.47035K562DDX24
chr1977073177707403+3'-UTR,5'-UTR,CDS4.097703.42611HepG2SRSF1
chr1977055347705618+3'-UTR,CDS,intron-Distal,intron-Proximal4.631343.56427K562FAM120A
chr1977046307704696+3'-UTR,CDS,intron-Distal,intron-Proximal4.275933.73331K562RBM15
chr1977066957706740+3'-UTR,CDS,intron-Distal,intron-Proximal3.243994.27260K562FXR2
chr1977076637707715+3'-UTR,5'-UTR,CDS,intron-Proximal3.294189.27114K562ZNF622
chr1977078757707914+3'-UTR,5'-UTR,CDS3.7004720.92093K562DDX24
chr1977073627707413+3'-UTR,5'-UTR,CDS4.156636.91320K562FXR2
chr1977068857706944+3'-UTR,CDS,intron-Proximal3.8369635.74458K562SF3B4
chr1977046697704689+3'-UTR,CDS,intron-Distal4.6415313.15557K562YBX3
chr1977073537707421+3'-UTR,5'-UTR,CDS4.4295321.29962K562DDX24
chr1977068577706930+3'-UTR,CDS,intron-Proximal5.1157616.10260HepG2SF3B4
chr1977056167705619+3'-UTR,CDS,intron-Distal,intron-Proximal3.387109.09662K562YBX3
chr1977076497707711+3'-UTR,5'-UTR,CDS,intron-Proximal3.746044.91393K562SRSF1
chr1977066387706695+3'-UTR,CDS,intron-Distal5.060316.09979K562FXR2
chr1977067677706926+3'-UTR,CDS,intron-Distal,intron-Proximal3.7991211.26503K562HNRNPK
chr1977068147706936+3'-UTR,CDS,intron-Distal,intron-Proximal3.892037.58507HepG2HNRNPK
chr1977036117703629+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.181326.35230K562DDX3X
chr1977046897704693+3'-UTR,CDS,intron-Distal4.4362911.17637K562YBX3
chr1977069457707005+3'-UTR,CDS,intron-Proximal3.267744.63108HepG2PPIG
chr1977046637704693+3'-UTR,CDS,intron-Distal5.1781211.01364K562DDX24
chr1977039037703935+3'-UTR,CDS,intron-Distal,intron-Proximal3.851353.84295K562GRWD1
chr1977073187707433+3'-UTR,5'-UTR,CDS,intron-Proximal4.253738.02029HepG2GRWD1
chr1977055177705632+3'-UTR,CDS,intron-Distal,intron-Proximal5.4022466.44906K562EIF4G2
chr1977076667707706+3'-UTR,5'-UTR,CDS3.336734.02339HepG2PABPN1
chr1977073767707418+3'-UTR,5'-UTR,CDS3.987695.39023K562FMR1
chr1976957077695731+CDS,intron-Proximal4.643544.01795HepG2LARP4
chr1976957087695733+CDS,intron-Proximal4.943215.94584K562PABPC4
chr1977071217707130+CDS3.846689.77514K562LIN28B
chr1976954827695546+CDS,intron-Distal,intron-Proximal4.229226.41658K562APOBEC3C
chr1976954757695545+CDS,intron-Distal5.541138.76030HepG2LARP4
chr1976954737695542+CDS,intron-Distal3.318726.08510K562SND1
chr1976955197695546+CDS,intron-Distal,intron-Proximal5.400768.52455K562PABPC4
chr1976947197694807+CDS,intron-Proximal3.873847.56654HepG2PRPF8
chr1976954567695550+CDS,intron-Distal,intron-Proximal3.100978.41726K562DDX55
chr1976954747695546+CDS,intron-Distal,intron-Proximal4.173683.49905HepG2PPIG
chr1976957087695733+CDS,intron-Proximal4.791996.34559K562APOBEC3C
chr1976956967695788+CDS,intron-Proximal4.5066612.46803K562AQR
chr1977051347705240+intron-Distal6.3633747.19537K562TARDBP
chr1977022887702398+intron-Distal5.4168913.82964HepG2EFTUD2
chr1977048297704879+intron-Distal4.9210723.80502K562TARDBP
chr1977035297703577+intron-Distal,intron-Proximal5.4147814.04112K562SF3B4
chr1977030827703108+intron-Distal3.642104.75435K562EFTUD2
chr1977054037705494+intron-Distal,intron-Proximal4.248474.70978HepG2IGF2BP1
chr1977049417704999+intron-Distal5.7872432.33176K562EIF4G2
chr1977020957702116+intron-Distal,intron-Proximal4.3193610.81562K562AQR
chr1977050387705142+intron-Distal5.8695961.04129K562AATF
chr1977054287705482+intron-Distal3.983365.44329K562RBFOX2
chr1977059037705944+intron-Distal,intron-Proximal5.1778912.70303K562AQR
chr1977050877705161+intron-Distal7.0223423.92638K562EIF4G2
chr1977067657706903+intron-Distal,intron-Proximal3.575505.52200HepG2DDX59
chr1977052007705254+intron-Distal6.3537416.86819K562AATF
chr1977050227705087+intron-Distal6.086956.69377HepG2DKC1
chr1977052557705276+intron-Distal4.9224710.97759K562EIF4G2
chr1977047217704829+intron-Distal,intron-Proximal5.1563535.22331K562TARDBP
chr1977045577704604+intron-Distal,intron-Proximal4.3634610.04766K562SF3B4
chr1977021167702197+intron-Distal,intron-Proximal3.777549.04524K562AQR
chr1976963597696425+3'-UTR,CDS,intron-Distal3.782977.16338HepG2LARP4
chr1976957887695844+3'-UTR,CDS,intron-Distal,intron-Proximal4.895794.65563K562AQR
chr1977053017705374+intron-Distal5.2526021.39987K562TARDBP
chr1977050757705134+intron-Distal5.7184126.31099K562TARDBP
chr1977020727702077+intron-Distal,intron-Proximal4.445568.01338K562AQR
chr1977052217705271+intron-Distal4.292944.43679K562IGF2BP1
chr1977039867704033+intron-Distal,intron-Proximal4.1638112.08528K562AQR
chr1977054027705509+intron-Distal,intron-Proximal8.05314181.07467K562EIF4G2
chr1977050247705075+intron-Distal6.5344227.63607K562TARDBP
chr1977020037702074+5'-UTR,CDS,intron-Distal,intron-Proximal3.5687210.05151K562DDX3X
chr1977035777703603+intron-Distal,intron-Proximal5.753819.44792K562SF3B4
chr1977054047705487+intron-Distal,intron-Proximal4.8711014.34245K562IGF2BP1
chr1977057507705783+intron-Distal,intron-Proximal4.115756.86590K562SF3B4
chr1977021147702160+intron-Distal,intron-Proximal5.4780213.71890K562EFTUD2
chr1977022907702370+intron-Distal3.322903.41960K562GTF2F1
chr1977021057702216+intron-Distal,intron-Proximal5.4326320.29902HepG2EFTUD2
chr1977067877706905+intron-Distal,intron-Proximal5.6539512.30102HepG2PCBP2
chr1977054247705510+intron-Distal,intron-Proximal3.990883.07706HepG2TIAL1
chr1977053847705508+intron-Distal,intron-Proximal8.0512990.34442K562AATF
chr1977021807702264+intron-Distal3.8730711.21207K562PRPF8
chr1977053927705498+intron-Distal,intron-Proximal7.4320145.97511K562TARDBP
chr1977052987705354+intron-Distal6.5310114.94161K562EIF4G2
chr1977047297704764+intron-Distal,intron-Proximal6.2684016.93072K562EIF4G2
chr1976947837694862+intron-Distal,intron-Proximal3.184883.18246K562PRPF8
chr1977068057706858+intron-Distal,intron-Proximal3.335287.37806K562EIF4G2
chr1977052407705293+intron-Distal6.6332430.08927K562TARDBP
chr1977075487707648+intron-Distal,intron-Proximal4.552305.62822K562HNRNPK
chr1977048767704970+intron-Distal6.2795934.07143K562AATF
chr1977047677704806+intron-Distal,intron-Proximal4.680405.33201K562IGF2BP1
chr1977023017702495+intron-Distal3.465977.92595K562SF3B4
chr1977021607702217+intron-Distal,intron-Proximal4.7967316.42602K562EFTUD2
chr1977021117702160+intron-Distal,intron-Proximal3.204033.71591HepG2PRPF8
chr1977021817702214+intron-Distal3.306004.61131K562EIF4G2
chr1977057007705782+intron-Distal,intron-Proximal4.1525214.28605K562EFTUD2
chr1977053907705488+intron-Distal,intron-Proximal4.939775.84822K562SRSF7
chr1977048627705164+intron-Distal6.3334620.67888K562IGF2BP1
chr1977040347704071+intron-Distal,intron-Proximal5.650679.63974K562AQR
chr1977021487702260+intron-Distal,intron-Proximal3.518453.77708K562GTF2F1
chr1977047167704767+intron-Distal,intron-Proximal5.2334410.77700K562IGF2BP1
chr1977050547705154+intron-Distal4.377483.77538K562SRSF7
chr1977022887702340+intron-Distal3.015615.37436K562EFTUD2
chr1977047207704804+intron-Distal,intron-Proximal7.3723641.59114K562AATF
chr1977020747702235+intron-Distal,intron-Proximal3.714706.25245HepG2PRPF4
chr1976963097696370+3'-UTR,CDS,intron-Distal,intron-Proximal3.407154.41130K562AQR
chr1977067857706863+intron-Distal,intron-Proximal3.9021912.95413K562QKI
chr1977053717705494+intron-Distal,intron-Proximal6.1637512.50505HepG2DKC1
chr1977050877705156+intron-Distal6.156485.48038HepG2DKC1
chr1977022167702263+intron-Distal5.856638.14804HepG2EFTUD2
chr1977020777702095+intron-Distal,intron-Proximal4.484568.30573K562AQR
chr1977048797704927+intron-Distal5.7311931.18976K562TARDBP
chr1976957487695797+CDS,intron-Proximal4.534895.66249K562TIA1
chr1977074257707447+intron-Proximal4.428164.21433K562PRPF8
chr1977068577706885+intron-Proximal3.9424328.07741K562SF3B4
chr1976947567694838+intron-Proximal3.856933.39593HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTD-3214H19.4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTD-3214H19.4 is not available on ENCORE database.

  • 64 RBPs can affect the levels of CTD-3214H19.4.  








The Knockdown/knockout RNA-Seq assay for CTD-3214H19.4 is not available on ENCORE database.





64 RBPs can affect the gene expression of CTD-3214H19.4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTD-3214H19.4ENSG00000268400.128.362001.637404.114406.451905.60310HepG2ACO1
CTD-3214H19.4ENSG00000268400.11.8199013.13610-2.851602.075201.42010HepG2DAZAP1
CTD-3214H19.4ENSG00000268400.17.8591089.18490-3.504405.500904.12200HepG2DDX5
CTD-3214H19.4ENSG00000268400.10.0000012.94570-99999.999993.583602.65110HepG2EIF4G1
CTD-3214H19.4ENSG00000268400.10.0000012.27710-99999.999993.367201.53750HepG2FMR1
CTD-3214H19.4ENSG00000268400.16.1506044.20320-2.845406.313604.12290HepG2GTF2F1
CTD-3214H19.4ENSG00000268400.10.0000044.97630-99999.9999912.518309.53030HepG2HLTF
CTD-3214H19.4ENSG00000268400.10.0000011.97090-99999.999993.222702.49960HepG2HNRNPL
CTD-3214H19.4ENSG00000268400.10.0000016.47870-99999.999992.665801.37550HepG2ILF3
CTD-3214H19.4ENSG00000268400.10.0000016.15480-99999.999992.587301.44480HepG2KHDRBS1
CTD-3214H19.4ENSG00000268400.114.015201.493803.229902.806401.78440HepG2KIF1C
CTD-3214H19.4ENSG00000268400.10.0000013.02490-99999.999993.559702.69510HepG2NOL12
CTD-3214H19.4ENSG00000268400.12.2089077.88190-5.139903.125402.33160HepG2NSUN2
CTD-3214H19.4ENSG00000268400.10.0000015.45810-99999.999992.558301.71260HepG2PABPC1
CTD-3214H19.4ENSG00000268400.10.0000013.18860-99999.999993.641102.98010HepG2PUM1
CTD-3214H19.4ENSG00000268400.10.0000013.18220-99999.999993.624402.86150HepG2PUM2
CTD-3214H19.4ENSG00000268400.10.0000042.82530-99999.9999910.686509.36610HepG2RAVER1
CTD-3214H19.4ENSG00000268400.195.4557023.582402.017003.009401.32790HepG2RBM39
CTD-3214H19.4ENSG00000268400.111.3183042.08240-1.894603.762702.66230HepG2RPS10
CTD-3214H19.4ENSG00000268400.10.0000046.61140-99999.9999913.6153010.54710HepG2RTF1
CTD-3214H19.4ENSG00000268400.191.1218025.320101.847406.528205.10040HepG2SERBP1
CTD-3214H19.4ENSG00000268400.10.0000012.26550-99999.999993.366302.68770HepG2SRSF5
CTD-3214H19.4ENSG00000268400.10.0000013.08970-99999.999991.794301.33250HepG2SRSF9
CTD-3214H19.4ENSG00000268400.137.4782085.64020-1.192202.488801.89110HepG2U2AF1
CTD-3214H19.4ENSG00000268400.10.0000012.83810-99999.999992.939602.07870HepG2UBE2L3
CTD-3214H19.4ENSG00000268400.113.7270042.12650-1.617702.487201.30200HepG2XRCC5
CTD-3214H19.4ENSG00000268400.1263.47120153.197300.782204.483202.94030K562AARS
CTD-3214H19.4ENSG00000268400.1375.81710155.513401.2729013.3876010.48530K562CCAR1
CTD-3214H19.4ENSG00000268400.1455.33610312.792400.541603.038101.51950K562CKAP4
CTD-3214H19.4ENSG00000268400.139.129701.978904.305409.623806.89390K562DDX6
CTD-3214H19.4ENSG00000268400.1326.46650158.172501.045303.734302.54650K562EIF3A
CTD-3214H19.4ENSG00000268400.1454.74740232.216100.969503.003002.11700K562FIP1L1
CTD-3214H19.4ENSG00000268400.16.6596085.44570-3.681502.746801.33550K562GEMIN5
CTD-3214H19.4ENSG00000268400.1269.22240145.695700.885705.664702.87370K562GRWD1
CTD-3214H19.4ENSG00000268400.1455.9096099.156302.200904.088801.90650K562HNRNPA0
CTD-3214H19.4ENSG00000268400.1349.49440167.643801.059808.855607.83810K562HNRNPC
CTD-3214H19.4ENSG00000268400.1356.46590162.321601.134804.159602.39980K562LARP7
CTD-3214H19.4ENSG00000268400.1290.03890170.014800.770503.851002.05600K562LIN28B
CTD-3214H19.4ENSG00000268400.1342.60500149.470001.196607.899705.23730K562LSM11
CTD-3214H19.4ENSG00000268400.1405.47590187.548401.112302.243201.30830K562MAK16
CTD-3214H19.4ENSG00000268400.1328.85250153.871101.095602.771201.88690K562NAA15
CTD-3214H19.4ENSG00000268400.17.1239083.74300-3.555202.585201.34930K562NONO
CTD-3214H19.4ENSG00000268400.1441.0239068.590202.684703.050402.00050K562PABPN1
CTD-3214H19.4ENSG00000268400.130.707905.076502.596604.130102.92810K562PCBP2
CTD-3214H19.4ENSG00000268400.1375.33790163.667301.197308.238305.73880K562PHF6
CTD-3214H19.4ENSG00000268400.1289.53450150.308400.945706.081304.66270K562PSIP1
CTD-3214H19.4ENSG00000268400.161.3416013.011102.237002.280101.40690K562PUM2
CTD-3214H19.4ENSG00000268400.1476.30090178.402301.4166012.0031010.77010K562RBM15
CTD-3214H19.4ENSG00000268400.154.3564011.357802.258704.052102.11070K562RBM17
CTD-3214H19.4ENSG00000268400.1356.19230137.128001.3770014.6411012.36950K562RCC2
CTD-3214H19.4ENSG00000268400.10.8409084.88420-6.657404.690002.95240K562RRP9
CTD-3214H19.4ENSG00000268400.10.9054071.03870-6.293904.186102.22460K562SERBP1
CTD-3214H19.4ENSG00000268400.1391.3978062.609202.644102.442201.34150K562SF1
CTD-3214H19.4ENSG00000268400.1390.2571076.155002.357304.007902.32030K562SFPQ
CTD-3214H19.4ENSG00000268400.1532.5438072.086802.8850013.171109.99020K562SNRNP200
CTD-3214H19.4ENSG00000268400.1331.23020129.994601.349304.595103.17850K562SRFBP1
CTD-3214H19.4ENSG00000268400.12.1892082.72910-5.239903.953001.95430K562SRP68
CTD-3214H19.4ENSG00000268400.1221.88520123.663500.843302.770801.83400K562SRPK2
CTD-3214H19.4ENSG00000268400.1465.3866088.169002.400005.532602.70400K562SUGP2
CTD-3214H19.4ENSG00000268400.1391.4909086.100902.184803.870802.06920K562SUPT6H
CTD-3214H19.4ENSG00000268400.10.0000073.24400-99999.999995.252102.96930K562TFIP11
CTD-3214H19.4ENSG00000268400.1300.36830144.572601.054807.362905.78120K562TIAL1
CTD-3214H19.4ENSG00000268400.1384.18490153.579701.322706.483304.89430K562TRIM56
CTD-3214H19.4ENSG00000268400.1131.6016014.123903.2199015.0606012.27790K562UBE2L3
CTD-3214H19.4ENSG00000268400.17.7511085.06680-3.456102.356201.42490K562UCHL5
CTD-3214H19.4ENSG00000268400.1208.55850129.703600.685103.598002.78670K562UPF1
CTD-3214H19.4ENSG00000268400.1388.6376072.807102.416204.707502.42080K562XPO5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTD-3214H19.4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CTD-3214H19.4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CTD-3214H19.4 is not avaliable on ENCORE database.