MSL3

General Information

Gene Name       : MSL3
Gene ID             : ENSG00000005302.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MSL3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MSL3ENSG00000005302.1828.0326.5927.31ENCSR000AEF
HepG2MSL3ENSG00000005302.184.996.565.78ENCSR985KAT
K562MSL3ENSG00000005302.1824.2123.7723.99ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MSL3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MSL3 RNA is bound by 10 proteins.  







eCLIP assay for MSL3 is not avaliable on ENCORE database.





10 proteins are bound to MSL3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX1178027911780373+3'-UTR,5'-UTR,CDS,intron-Proximal4.8243112.66167K562ZNF622
chrX1178024011780374+3'-UTR,5'-UTR,CDS,intron-Proximal5.093117.39496HepG2BCLAF1
chrX1178384811783937+3'-UTR,CDS,intron-Proximal4.344187.50107K562AQR
chrX1177895211779047+3'-UTR,5'-UTR,CDS,intron-Proximal3.035854.09989K562UCHL5
chrX1177963411779702+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.450304.78571K562UCHL5
chrX1177855711778618+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.512846.25299K562ZNF622
chrX1177665311776740+5'-UTR,intron-Distal4.615113.19482K562AKAP8L
chrX1178103911781119+5'-UTR,CDS,intron-Proximal3.957916.68017K562UCHL5
chrX1178095511781007+5'-UTR,CDS,intron-Proximal4.359824.34038HepG2BCLAF1
chrX1177791211777966+5'-UTR,CDS3.241323.12941K562UCHL5
chrX1178095511780985+5'-UTR,CDS,intron-Proximal3.548043.61259K562ZNF622
chrX1178028411780361+5'-UTR,CDS3.349874.59873K562UCHL5
chrX1178033411780372+5'-UTR,CDS,intron-Proximal3.154285.33841K562DDX24
chrX1178095411781023+5'-UTR,CDS,intron-Proximal4.324807.39346K562DDX24
chrX1178095511781013+5'-UTR,CDS,intron-Proximal4.412593.23702K562PUM1
chrX1177790611777972+5'-UTR,CDS,intron-Proximal3.683365.08507K562ZNF622
chrX1177653311776629+intron-Distal,intron-Proximal4.933825.68371K562AKAP8L
chrX1178284711782918+intron-Distal3.154033.09339K562MATR3
chrX1178291811783032+intron-Distal3.182765.38571K562MATR3
chrX1178289911783025+intron-Distal4.4958617.02996K562PTBP1
chrX1178684011786997+intron-Distal,intron-Proximal3.546345.32884K562KHSRP
chrX1178285811782995+intron-Distal3.584594.19039HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MSL3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MSL3 is not available on ENCORE database.

  • 39 RBPs can affect the levels of MSL3.  








The Knockdown/knockout RNA-Seq assay for MSL3 is not available on ENCORE database.





39 RBPs can affect the gene expression of MSL3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MSL3ENSG00000005302.13317.79470205.224700.630804.703403.95100HepG2ACO1
MSL3ENSG00000005302.13483.95380259.359700.899806.263105.50010HepG2AKAP1
MSL3ENSG00000005302.13297.00770214.592900.468801.975001.30830HepG2ASCC1
MSL3ENSG00000005302.13430.02060315.941200.444603.097502.37750HepG2AUH
MSL3ENSG00000005302.13384.53650297.391200.370701.927901.37270HepG2CELF1
MSL3ENSG00000005302.13491.77750248.435300.985008.353207.31590HepG2DDX3X
MSL3ENSG00000005302.13511.72560330.143200.632202.225701.35190HepG2DDX59
MSL3ENSG00000005302.13344.79010220.757900.643202.795502.10320HepG2EIF4B
MSL3ENSG00000005302.13503.69100362.758600.473403.333802.68320HepG2ETF1
MSL3ENSG00000005302.13535.13170328.581700.703504.630703.65490HepG2FIP1L1
MSL3ENSG00000005302.13348.38620214.926500.696704.099203.26340HepG2HNRNPK
MSL3ENSG00000005302.13229.93590314.51470-0.451901.891801.36190HepG2HNRNPLL
MSL3ENSG00000005302.13302.47590215.694800.487702.103701.50580HepG2IGF2BP2
MSL3ENSG00000005302.13370.02070202.450400.869902.608501.65530HepG2IGF2BP3
MSL3ENSG00000005302.13330.53300235.549600.488702.197001.63070HepG2NCBP2
MSL3ENSG00000005302.13423.42490321.333300.397902.265001.71750HepG2PUM1
MSL3ENSG00000005302.13654.27580303.195801.1095016.9657015.90520HepG2RBM22
MSL3ENSG00000005302.13367.13760264.284100.474102.913702.36070HepG2NELFE
MSL3ENSG00000005302.13263.04670166.081900.663303.466802.78690HepG2RPS19
MSL3ENSG00000005302.13221.41540290.22010-0.390402.184001.54840HepG2SLBP
MSL3ENSG00000005302.13588.65140342.442600.781509.940409.15070HepG2SRFBP1
MSL3ENSG00000005302.13339.33210258.057900.394902.166001.73350HepG2SRSF1
MSL3ENSG00000005302.13381.43280231.993600.717204.798004.09260HepG2TAF15
MSL3ENSG00000005302.13186.86000306.53670-0.714104.071203.21160HepG2TARDBP
MSL3ENSG00000005302.13144.99040215.32490-0.570602.537502.05470HepG2TIAL1
MSL3ENSG00000005302.13202.90260295.71280-0.543402.973802.06410HepG2TUFM
MSL3ENSG00000005302.13325.42390225.281700.530503.642902.88960HepG2ZC3H8
MSL3ENSG00000005302.13706.93910955.97550-0.435403.145702.21430K562BOP1
MSL3ENSG00000005302.13798.671201053.54200-0.399602.698501.30360K562BUD13
MSL3ENSG00000005302.13889.09600632.120000.492005.650904.82990K562FXR1
MSL3ENSG00000005302.13988.183701342.03810-0.441604.199003.27070K562GRSF1
MSL3ENSG00000005302.13987.24480739.538500.416702.938901.66540K562HNRNPK
MSL3ENSG00000005302.131296.050601018.774800.347202.216201.47240K562PCBP3
MSL3ENSG00000005302.131034.32890781.414000.404403.836602.88580K562POLR2G
MSL3ENSG00000005302.13772.13690611.210200.337102.008301.36350K562PRPF8
MSL3ENSG00000005302.132168.232401697.276300.353202.899402.06410K562PUF60
MSL3ENSG00000005302.131436.083101164.878400.301902.108001.62130K562PUS1
MSL3ENSG00000005302.13961.443101134.93410-0.239301.832801.33260K562RBM15
MSL3ENSG00000005302.13909.59190696.324700.385402.988601.86360K562SAFB
MSL3ENSG00000005302.131121.90810783.807700.517305.970504.75520K562SYNCRIP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MSL3 is not available on ENCORE database.





5 RBPs can affect the splicing of MSL3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMSL3ENSG00000005302.13chrX+117796181177970111778955117790561178024811780371-0.250000.000000.00005excludedK562SF3B4
SEMSL3ENSG00000005302.13chrX+117796181177970111778955117790561178024811780371-0.389000.000000.00000excludedHepG2U2AF2
SEMSL3ENSG00000005302.13chrX+117796181177970111778955117790561178022211780371-0.063000.007380.06385excludedK562AQR
SEMSL3ENSG00000005302.13chrX+117796181177970111778955117790561178024811780371-0.197000.000080.00267excludedK562U2AF1
SEMSL3ENSG00000005302.13chrX+117796181177970111778955117790561178024811780371-0.121000.002430.04090excludedK562U2AF2
SEMSL3ENSG00000005302.13chrX+117796181177970111778955117790561178024811780371-0.143000.000090.00543excludedK562TARDBP
A3SSMSL3ENSG00000005302.13chrX+1178022211780371117802481178037111779618117797010.091000.000010.00014longerK562AQR
A3SSMSL3ENSG00000005302.13chrX+1177893411779056117789551177905611778530117786170.086000.000110.00092longerK562AQR
A3SSMSL3ENSG00000005302.13chrX+1178185311782057117818981178205711780877117811160.062000.000380.00294longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MSL3 is not avaliable on ENCORE database.