IFFO1

General Information

Gene Name : IFFO1
Gene ID : ENSG00000010295.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: IFFO1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	IFFO1	ENSG00000010295.19	1.41	3.69	2.55	ENCSR000AEF
HepG2	IFFO1	ENSG00000010295.19	14.85	4.79	9.82	ENCSR985KAT
K562	IFFO1	ENSG00000010295.19	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for IFFO1 is not avaliable on ENCORE database.

Proteins bound to RNA

IFFO1 RNA is bound by 12 proteins.

eCLIP assay for IFFO1 is not avaliable on ENCORE database.

12 proteins are bound to IFFO1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	6648938	6649013	-	3'-UTR,intron-Distal	3.96451	3.80435	HepG2	LSM11
chr12	6650674	6650757	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.06085	4.31828	HepG2	SRSF1
chr12	6650675	6650755	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.28693	3.95327	HepG2	PPIG
chr12	6657582	6657634	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.51785	9.04641	HepG2	PPIG
chr12	6657229	6657251	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.91616	4.97342	HepG2	PPIG
chr12	6657545	6657605	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.12760	6.15485	HepG2	PRPF8
chr12	6657946	6658000	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.84251	3.31322	HepG2	SF3B4
chr12	6657939	6657998	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.54037	7.64877	HepG2	U2AF2
chr12	6660105	6660166	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.29900	6.08299	HepG2	PPIG
chr12	6657323	6657367	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.64314	5.80027	HepG2	SF3B4
chr12	6657548	6657598	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.95592	11.76814	HepG2	AQR
chr12	6657251	6657292	-	5'-UTR,CDS,intron-Distal	4.09193	5.80295	HepG2	PPIG
chr12	6659927	6659956	-	5'-UTR,CDS,intron-Distal	3.81638	4.68902	HepG2	PPIG
chr12	6657584	6657701	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.00460	3.48299	HepG2	SRSF9
chr12	6658856	6658935	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.17151	10.72310	HepG2	PRPF8
chr12	6658921	6659049	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.04695	9.75508	HepG2	GRWD1
chr12	6657634	6657690	-	5'-UTR,CDS,intron-Distal	3.18855	7.15529	HepG2	PPIG
chr12	6658921	6659006	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.73832	8.74774	HepG2	PPIG
chr12	6657579	6657706	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.51816	4.77403	HepG2	SRSF1
chr12	6658427	6658520	-	intron-Distal,intron-Proximal	5.57780	24.98467	HepG2	PTBP1
chr12	6663436	6663474	-	intron-Distal	5.99901	11.82752	HepG2	XPO5
chr12	6657449	6657534	-	intron-Distal,intron-Proximal	4.34538	5.91072	HepG2	PCBP2
chr12	6656842	6656935	-	intron-Distal	5.94920	14.23108	HepG2	PTBP1
chr12	6657389	6657457	-	intron-Distal,intron-Proximal	4.45692	9.53993	HepG2	PTBP1
chr12	6657329	6657402	-	intron-Distal,intron-Proximal	5.69895	12.86303	HepG2	AQR
chr12	6658003	6658050	-	intron-Distal,intron-Proximal	4.22120	3.98315	HepG2	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for IFFO1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for IFFO1 is not available on ENCORE database.
70 RBPs can affect the levels of IFFO1.

The Knockdown/knockout RNA-Seq assay for IFFO1 is not available on ENCORE database.

70 RBPs can affect the gene expression of IFFO1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
IFFO1	ENSG00000010295.15	657.36910	485.71500	0.43650	2.53210	1.62990	HepG2	ABCF1
IFFO1	ENSG00000010295.15	555.83490	309.53730	0.84440	6.67000	5.17890	HepG2	BCCIP
IFFO1	ENSG00000010295.15	747.21600	412.53440	0.85690	15.65280	14.34240	HepG2	CKAP4
IFFO1	ENSG00000010295.15	496.94340	381.61810	0.38090	3.14730	2.26290	HepG2	DDX19B
IFFO1	ENSG00000010295.15	351.34370	226.94000	0.63050	3.94130	3.14570	HepG2	DDX21
IFFO1	ENSG00000010295.15	553.45440	363.12030	0.60790	4.57730	3.29270	HepG2	DDX5
IFFO1	ENSG00000010295.15	272.70950	176.65340	0.62630	3.31700	2.24790	HepG2	DHX30
IFFO1	ENSG00000010295.15	764.87200	394.76940	0.95410	9.60450	8.49870	HepG2	DKC1
IFFO1	ENSG00000010295.15	264.50030	183.15250	0.53010	2.87800	2.16410	HepG2	DNAJC21
IFFO1	ENSG00000010295.15	253.33570	181.54750	0.48060	2.75660	2.10630	HepG2	DNAJC2
IFFO1	ENSG00000010295.15	408.08790	238.06920	0.77740	4.83520	3.64760	HepG2	EEF2
IFFO1	ENSG00000010295.15	552.71440	359.64640	0.61990	3.89920	3.14460	HepG2	EIF4A3
IFFO1	ENSG00000010295.15	591.51360	350.24280	0.75600	4.68230	3.80170	HepG2	EIF4B
IFFO1	ENSG00000010295.15	385.75670	266.89330	0.53130	2.61360	1.84880	HepG2	FUBP3
IFFO1	ENSG00000010295.15	510.01620	336.66210	0.59910	3.79610	3.02050	HepG2	G3BP1
IFFO1	ENSG00000010295.15	553.26200	357.49340	0.62990	4.44930	3.30790	HepG2	G3BP2
IFFO1	ENSG00000010295.15	451.04510	184.90730	1.28640	13.78630	12.51740	HepG2	HNRNPA1
IFFO1	ENSG00000010295.15	369.03630	205.67930	0.84330	5.96030	4.97000	HepG2	HNRNPC
IFFO1	ENSG00000010295.15	504.99890	400.48090	0.33440	2.21060	1.56410	HepG2	HNRNPF
IFFO1	ENSG00000010295.15	471.79600	204.31920	1.20720	18.19640	16.74350	HepG2	HNRNPU
IFFO1	ENSG00000010295.15	582.63010	394.35810	0.56300	4.92560	3.98610	HepG2	IGF2BP1
IFFO1	ENSG00000010295.15	672.73640	342.18700	0.97520	10.02300	8.82270	HepG2	IGF2BP2
IFFO1	ENSG00000010295.15	394.99960	208.70460	0.92030	11.10860	9.74560	HepG2	ILF2
IFFO1	ENSG00000010295.15	378.51760	235.75050	0.68300	3.88810	2.43360	HepG2	KHDRBS1
IFFO1	ENSG00000010295.15	718.10300	414.81720	0.79160	6.09280	4.85280	HepG2	LARP4
IFFO1	ENSG00000010295.15	586.83020	363.11670	0.69240	5.15090	4.26350	HepG2	MAGOH
IFFO1	ENSG00000010295.15	583.91160	365.12930	0.67720	3.49620	2.79430	HepG2	MATR3
IFFO1	ENSG00000010295.15	745.86350	373.71410	0.99690	10.38030	9.19450	HepG2	NCBP2
IFFO1	ENSG00000010295.15	550.45140	374.33030	0.55620	2.42880	1.71650	HepG2	NOL12
IFFO1	ENSG00000010295.15	451.19520	332.74310	0.43920	2.24330	1.58800	HepG2	PABPC4
IFFO1	ENSG00000010295.15	253.71960	159.79400	0.66690	3.64930	2.23460	HepG2	PKM
IFFO1	ENSG00000010295.15	254.85080	182.23560	0.48370	2.49940	1.79480	HepG2	PPIL4
IFFO1	ENSG00000010295.15	355.59260	234.85650	0.59830	3.46360	2.57010	HepG2	PRPF8
IFFO1	ENSG00000010295.15	440.95530	356.30030	0.30740	1.81750	1.35610	HepG2	PTBP1
IFFO1	ENSG00000010295.15	690.29790	357.34560	0.94980	12.31910	11.18090	HepG2	PUF60
IFFO1	ENSG00000010295.15	551.94990	379.35520	0.54090	6.32260	5.50240	HepG2	PUM1
IFFO1	ENSG00000010295.15	578.21690	420.28430	0.46010	4.39570	3.65270	HepG2	PUS1
IFFO1	ENSG00000010295.15	490.35710	385.86950	0.34560	2.00570	1.46080	HepG2	QKI
IFFO1	ENSG00000010295.15	522.02570	275.58180	0.92150	4.24160	2.99630	HepG2	RBM27
IFFO1	ENSG00000010295.15	352.39520	223.78660	0.65500	2.59090	1.56670	HepG2	RCC2
IFFO1	ENSG00000010295.15	635.88910	396.52310	0.68130	7.64940	6.83010	HepG2	NELFE
IFFO1	ENSG00000010295.15	567.03340	369.31630	0.61850	6.25970	5.38480	HepG2	RECQL
IFFO1	ENSG00000010295.15	354.11290	224.77030	0.65570	2.92390	1.95520	HepG2	RPS10
IFFO1	ENSG00000010295.15	372.82870	188.05050	0.98730	8.31530	7.31620	HepG2	RPS19
IFFO1	ENSG00000010295.15	534.78960	254.12390	1.07330	9.63560	8.22070	HepG2	RPS2
IFFO1	ENSG00000010295.15	500.75430	248.42680	1.01120	7.78590	6.46280	HepG2	RPS3A
IFFO1	ENSG00000010295.15	322.97210	181.95280	0.82770	7.33310	6.35600	HepG2	SAFB2
IFFO1	ENSG00000010295.15	994.77130	534.32980	0.89650	8.17570	6.97040	HepG2	SF3A3
IFFO1	ENSG00000010295.15	521.47430	347.89650	0.58380	4.23820	3.38210	HepG2	SF3B1
IFFO1	ENSG00000010295.15	758.32980	370.94410	1.03150	18.01430	16.70900	HepG2	SF3B4
IFFO1	ENSG00000010295.15	487.47420	342.67380	0.50840	4.85410	3.96500	HepG2	SLBP
IFFO1	ENSG00000010295.15	383.59610	212.18370	0.85420	8.94670	7.89480	HepG2	SMN1
IFFO1	ENSG00000010295.15	394.79370	657.60200	-0.73610	6.28200	5.61070	HepG2	SRFBP1
IFFO1	ENSG00000010295.15	254.43320	374.32760	-0.55700	2.45130	1.51420	HepG2	SRSF3
IFFO1	ENSG00000010295.15	518.04670	352.84720	0.55390	5.46950	4.63280	HepG2	SRSF5
IFFO1	ENSG00000010295.15	909.16930	570.92140	0.67120	10.68730	9.80760	HepG2	SSB
IFFO1	ENSG00000010295.15	362.12750	216.15370	0.74430	4.51720	3.07680	HepG2	STIP1
IFFO1	ENSG00000010295.15	613.03710	401.26700	0.61130	7.62200	6.67440	HepG2	SUCLG1
IFFO1	ENSG00000010295.15	554.91350	342.56490	0.69580	3.31950	2.53330	HepG2	TARDBP
IFFO1	ENSG00000010295.15	558.77160	198.51890	1.49290	24.91250	23.69630	HepG2	TIAL1
IFFO1	ENSG00000010295.15	356.75030	200.31000	0.83260	8.02770	7.14570	HepG2	TRIM56
IFFO1	ENSG00000010295.15	512.07720	349.13940	0.55250	4.31020	3.19050	HepG2	TUFM
IFFO1	ENSG00000010295.15	582.21500	369.57700	0.65560	4.34180	3.27880	HepG2	UBE2L3
IFFO1	ENSG00000010295.15	321.40950	178.99620	0.84440	6.21060	5.06330	HepG2	UCHL5
IFFO1	ENSG00000010295.15	611.97410	473.86680	0.36890	1.94940	1.34610	HepG2	UPF1
IFFO1	ENSG00000010295.15	360.00370	457.50300	-0.34580	2.00650	1.47950	HepG2	UTP3
IFFO1	ENSG00000010295.15	348.92250	222.52460	0.64880	3.29260	2.08670	HepG2	XPO5
IFFO1	ENSG00000010295.15	571.89690	298.24530	0.93920	8.81330	7.53580	HepG2	XRN2
IFFO1	ENSG00000010295.15	422.49360	310.87950	0.44250	3.24690	2.52960	HepG2	ZC3H8
IFFO1	ENSG00000010295.15	36.24510	2.71020	3.74120	6.62350	5.77940	K562	AQR
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for IFFO1 is not available on ENCORE database.

5 RBPs can affect the splicing of IFFO1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	IFFO1	ENSG00000010295.15	chr12	-	6657230	6657711	6657230	6657326	6657590	6657711	0.36200	0.00272	0.05720	included	HepG2	UCHL5
RI	IFFO1	ENSG00000010295.15	chr12	-	6657230	6657711	6657230	6657326	6657590	6657711	-0.20900	0.00389	0.03739	excluded	HepG2	RBM22
RI	IFFO1	ENSG00000010295.15	chr12	-	6657230	6657711	6657230	6657326	6657590	6657711	-0.20400	0.00606	0.09709	excluded	HepG2	PTBP1
RI	IFFO1	ENSG00000010295.15	chr12	-	6657230	6657711	6657230	6657326	6657590	6657711	0.26300	0.00104	0.03929	included	HepG2	XRN2
RI	IFFO1	ENSG00000010295.15	chr12	-	6657230	6657711	6657230	6657326	6657590	6657711	-0.21100	0.00140	0.07046	excluded	HepG2	SSB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

IFFO1

General Information

Functions

Localization

Domains (AlphaFold: IFFO1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for IFFO1 is not avaliable on ENCORE database.

12 proteins are bound to IFFO1 RNA:

eCLIP assay for IFFO1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for IFFO1 is not available on ENCORE database.

70 RBPs can affect the gene expression of IFFO1 :

The Knockdown/knockout RNA-Seq assay for IFFO1 is not available on ENCORE database.

5 RBPs can affect the splicing of IFFO1 :

The Knockdown/knockout RNA-Seq assay for IFFO1 is not avaliable on ENCORE database.