CHD9

General Information

Gene Name       : CHD9
Gene ID             : ENSG00000177200.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHD9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHD9ENSG00000177200.1732.3125.4828.90ENCSR000AEF
HepG2CHD9ENSG00000177200.176.4112.459.43ENCSR985KAT
K562CHD9ENSG00000177200.1718.5319.4819.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHD9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHD9 RNA is bound by 53 proteins.  







eCLIP assay for CHD9 is not avaliable on ENCORE database.





53 proteins are bound to CHD9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr165318981953189874+3'-UTR,5'-UTR,intron-Proximal3.286894.35314HepG2U2AF2
chr165335539253355454+3'-UTR,CDS,intron-Proximal4.869655.58150K562SF3B4
chr165336039753360439+3'-UTR4.163613.54095K562FAM120A
chr165335886253358914+3'-UTR5.7600722.81869K562PUM2
chr165316507353165143+5'-UTR,intron-Distal5.2591110.33388K562NONO
chr165324341753243504+5'-UTR,CDS,intron-Proximal3.108838.17760K562UCHL5
chr165316506753165130+5'-UTR,intron-Distal,intron-Proximal3.455913.12788HepG2DGCR8
chr165316507553165174+5'-UTR,intron-Distal3.877095.00766K562EWSR1
chr165316507353165137+5'-UTR,intron-Distal3.208056.83630HepG2NKRF
chr165316516653165217+5'-UTR,intron-Distal,intron-Proximal3.642845.16186K562NONO
chr165324339353243421+5'-UTR,CDS,intron-Proximal3.805354.46864HepG2BCLAF1
chr165308895253089138+5'-UTR,intron-Distal,intron-Proximal3.9401513.05817HepG2NCBP2
chr165316514053165198+5'-UTR,intron-Distal4.1424512.41022HepG2CSTF2T
chr165316483253164877+5'-UTR,intron-Distal4.677246.38928HepG2NKRF
chr165316505453165140+5'-UTR,intron-Distal,intron-Proximal4.6653326.99277HepG2CSTF2T
chr165316506453165132+5'-UTR,intron-Distal,intron-Proximal3.709187.20632HepG2FAM120A
chr165316505753165137+5'-UTR,intron-Distal,intron-Proximal4.134257.13178K562CSTF2T
chr165316506953165130+5'-UTR,intron-Distal,intron-Proximal3.870743.22073HepG2KHSRP
chr165324339353243522+5'-UTR,CDS,intron-Proximal3.539794.51666K562RBM15
chr165316509553165125+5'-UTR,intron-Distal3.661967.54291HepG2XRN2
chr165316502453165054+5'-UTR,intron-Distal,intron-Proximal3.700135.85439HepG2CSTF2T
chr165316510253165191+5'-UTR,intron-Distal3.900904.75920HepG2FKBP4
chr165324344553243472+5'-UTR,CDS,intron-Proximal5.152306.13315HepG2BCLAF1
chr165326288853262962+CDS,intron-Proximal3.016533.40130K562GPKOW
chr165326534053265422+CDS,intron-Proximal3.985925.36918HepG2ZNF800
chr165330132953301397+CDS3.285014.41784HepG2GRWD1
chr165327225453272332+CDS,intron-Proximal3.277486.73967K562ZNF622
chr165319083453190907+CDS,intron-Distal4.831948.04245K562IGF2BP1
chr165327961653279661+CDS5.215077.49561HepG2BCLAF1
chr165327679953276851+CDS4.8088811.99174HepG2BCLAF1
chr165326145853261490+CDS,intron-Proximal3.325643.39477K562BUD13
chr165319029953190376+CDS,intron-Distal3.690643.57974K562IGF2BP1
chr165328140853281518+CDS,intron-Distal,intron-Proximal3.210195.47590K562PRPF8
chr165327966153279758+CDS4.4794015.11988HepG2BCLAF1
chr165333845553338525+CDS3.617146.44455K562ZNF622
chr165328964853289692+CDS,intron-Proximal6.1493814.88884HepG2BCLAF1
chr165328119453281242+CDS,intron-Proximal4.711235.55733K562BUD13
chr165333834553338417+CDS3.470125.40646K562RBM15
chr165328961553289648+CDS4.8158910.64218HepG2BCLAF1
chr165333782253337882+CDS4.515335.16052K562RBM15
chr165332013853320194+CDS4.238603.71264HepG2FXR2
chr165326038653260499+CDS,intron-Proximal4.538143.49003K562PRPF8
chr165326913353269215+CDS3.154907.34382K562UCHL5
chr165326039053260416+CDS3.674033.69481K562UCHL5
chr165326300253263011+CDS4.381554.78571K562UCHL5
chr165328132553281420+CDS,intron-Proximal3.956084.06501K562GRWD1
chr165326532953265392+CDS,intron-Proximal6.2845918.08320K562ZNF622
chr165326533353265418+CDS,intron-Proximal4.4005316.78334K562UCHL5
chr165328120453281313+CDS,intron-Proximal3.319099.32936K562ZNF622
chr165326132053261353+CDS3.292396.05769K562ZNF622
chr165329693153297001+CDS4.519904.56100HepG2FXR2
chr165330183653301880+CDS,intron-Proximal4.045897.89209HepG2BCLAF1
chr165326914053269219+CDS,intron-Proximal3.5327110.52099K562DDX24
chr165326289753262954+CDS4.483108.15024HepG2BCLAF1
chr165330122453301403+CDS,intron-Proximal3.945206.05315HepG2FXR2
chr165327675153276795+CDS,intron-Proximal3.732889.08790HepG2BCLAF1
chr165328394753283979+CDS,intron-Proximal4.2878611.55000HepG2BCLAF1
chr165328134953281411+CDS3.8131712.82131HepG2BCLAF1
chr165333844353338526+CDS4.387528.09313HepG2PCBP2
chr165326533353265418+CDS,intron-Proximal3.923585.50166HepG2FXR2
chr165319117253191275+CDS3.407514.68262K562RBM15
chr165326029653260376+CDS3.259895.01393K562UCHL5
chr165326026453260379+CDS,intron-Proximal3.100034.94335K562GPKOW
chr165327247453272499+CDS,intron-Proximal4.149364.50960HepG2GRWD1
chr165327225853272291+CDS3.359826.20035HepG2BCLAF1
chr165326537353265419+CDS,intron-Proximal3.687377.36517K562DDX24
chr165331950753319540+CDS,intron-Proximal4.165306.65960HepG2BCLAF1
chr165328125053281308+CDS3.297988.84415HepG2BCLAF1
chr165326540953265418+CDS,intron-Proximal5.8668913.49216HepG2BCLAF1
chr165326037153260422+CDS5.9374613.02740HepG2BCLAF1
chr165327236653272424+CDS4.032833.24150HepG2HLTF
chr165328394053283978+CDS3.843545.20093K562DDX24
chr165328135553281408+CDS3.704376.43326K562UCHL5
chr165327237453272424+CDS3.339637.43909HepG2BCLAF1
chr165329689853296902+CDS,intron-Proximal4.530344.34038HepG2BCLAF1
chr165328957053289615+CDS4.6118410.19430HepG2BCLAF1
chr165335212953352154+CDS3.480333.57857HepG2BCLAF1
chr165334270753342750+CDS4.688315.50697K562UCHL5
chr165326533053265367+CDS,intron-Proximal4.6766613.52497HepG2BCLAF1
chr165327953153279600+CDS4.5870410.57237K562ZNF622
chr165327954353279625+CDS3.107735.33841K562DDX24
chr165328387153283904+CDS3.628189.56116HepG2BCLAF1
chr165328953253289697+CDS,intron-Proximal3.7995214.59482K562UCHL5
chr165331952053319563+CDS3.264313.43213K562UCHL5
chr165326910753269192+CDS4.9573620.06099HepG2BCLAF1
chr165326038453260422+CDS4.419195.23082K562DDX24
chr165332673853326811+CDS,intron-Proximal4.295223.66349K562LIN28B
chr165332563953325677+CDS3.962483.44423K562BUD13
chr165328375253283817+CDS,intron-Proximal4.680394.40745K562SF3B4
chr165333090953330955+CDS3.255785.17903K562UCHL5
chr165326128353261342+CDS,intron-Proximal3.867625.09028HepG2U2AF2
chr165326146253261512+CDS4.126107.27704K562ZNF622
chr165329695253296996+CDS3.876636.39464HepG2BCLAF1
chr165330124553301400+CDS4.280344.37331K562GRWD1
chr165324352453243597+CDS,intron-Proximal4.9165512.48233HepG2BCLAF1
chr165326130653261320+CDS,intron-Proximal3.438625.04943K562ZNF622
chr165325655753256602+CDS4.526889.14010HepG2BCLAF1
chr165333765053337752+CDS3.637897.39702K562RBM15
chr165334261253342650+CDS3.012875.00751HepG2BCLAF1
chr165327967353279725+CDS3.420163.50696K562BUD13
chr165327688853276928+CDS3.236224.62864K562ZNF622
chr165330137453301402+CDS3.333623.07653K562ZNF622
chr165328125553281288+CDS4.033163.18234K562BUD13
chr165326300253263012+CDS4.204307.09561HepG2BCLAF1
chr165327674953276786+CDS,intron-Proximal3.080313.40321HepG2GRWD1
chr165327229553272346+CDS4.017578.49795HepG2BCLAF1
chr165330124553301403+CDS,intron-Proximal5.1008020.22136HepG2BCLAF1
chr165326028653260364+CDS5.1515712.81938HepG2BCLAF1
chr165324353753243642+CDS,intron-Proximal3.951758.82687K562UCHL5
chr165327955553279690+CDS3.226346.67614HepG2HLTF
chr165333816853338210+CDS4.060113.48187K562RBM15
chr165326919253269219+CDS,intron-Proximal3.345608.43208HepG2BCLAF1
chr165327675153276792+CDS,intron-Proximal3.466156.09767K562UCHL5
chr165327675153276782+CDS,intron-Proximal3.005505.65791K562ZNF622
chr165334023753340247+CDS3.359823.57857HepG2BCLAF1
chr165327933953279379+CDS4.159556.84316HepG2BCLAF1
chr165319066753190730+CDS,intron-Distal4.380436.96969HepG2HNRNPL
chr165328394253283979+CDS,intron-Proximal4.804754.29511HepG2EIF3H
chr165327246553272498+CDS3.7381710.17809K562ZNF622
chr165326300153263012+CDS4.012845.47804K562ZNF622
chr165328390453283927+CDS3.766629.93259HepG2BCLAF1
chr165328955553289688+CDS3.7021012.45717K562ZNF622
chr165319081453190886+CDS,intron-Distal3.133416.01632HepG2HNRNPL
chr165326555853265579+CDS,intron-Proximal3.824315.37538K562ZNF622
chr165333091453330992+CDS4.080347.23562HepG2BCLAF1
chr165327241253272465+CDS3.261009.81234K562ZNF622
chr165329694453297000+CDS3.512846.25299K562ZNF622
chr165326539253265418+CDS,intron-Proximal4.527139.94776K562ZNF622
chr165319068153190731+CDS,intron-Distal4.188793.74511K562IGF2BP1
chr165326145953261478+CDS,intron-Proximal4.194756.84316HepG2BCLAF1
chr165333765053337711+CDS5.012966.51488K562LIN28B
chr165319042553190478+CDS,intron-Distal4.337594.93465K562RBM15
chr165326289753262951+CDS3.310876.54511K562UCHL5
chr165327233353272403+CDS3.014984.88466K562UCHL5
chr165326135253261380+CDS,intron-Proximal4.031734.46002K562DDX24
chr165327243753272501+CDS,intron-Proximal4.6449813.85602HepG2BCLAF1
chr165326025653260426+CDS,intron-Proximal3.077045.47260HepG2AQR
chr165327688553276928+CDS3.176666.33024HepG2BCLAF1
chr165328120853281250+CDS4.593119.30195HepG2BCLAF1
chr165319061353190667+CDS,intron-Distal3.153223.42769HepG2HNRNPL
chr165326134553261376+CDS5.6947511.16146HepG2BCLAF1
chr165326130953261345+CDS4.480338.47938HepG2BCLAF1
chr165319138953191445+CDS3.630085.13030K562RBM15
chr165319060453190667+CDS,intron-Distal3.415044.53184K562IGF2BP1
chr165326144453261500+CDS,intron-Proximal4.420585.32062K562EFTUD2
chr165324368453243723+CDS5.067346.71715HepG2BCLAF1
chr165326038153260425+CDS,intron-Proximal5.4995010.17900K562ZNF622
chr165335808253358138+CDS4.060113.48187K562RBM15
chr165326555853265634+CDS,intron-Proximal4.6563415.55279HepG2BCLAF1
chr165327951753279616+CDS4.5994111.11870HepG2BCLAF1
chr165332186753321911+CDS,intron-Proximal4.164683.96990K562BUD13
chr165326030253260366+CDS3.518237.59700K562ZNF622
chr165330814953308211+CDS3.450888.16183HepG2BCLAF1
chr165328834953288376+CDS,intron-Proximal4.804754.29511HepG2EIF3H
chr165326031453260384+CDS5.2452311.60475K562DDX24
chr165324359753243662+CDS,intron-Proximal5.8728213.58086HepG2BCLAF1
chr165326563453265687+CDS3.730926.67313HepG2BCLAF1
chr165335827753358351+CDS3.701604.28265HepG2FXR2
chr165319041753190461+CDS,intron-Distal3.282963.77546HepG2HNRNPL
chr165328834953288369+CDS,intron-Proximal5.136024.48364K562DDX24
chr165326037353260426+CDS,intron-Proximal3.350303.61820HepG2HLTF
chr165326536753265409+CDS5.6875020.66082HepG2BCLAF1
chr165319101153191058+CDS,intron-Distal3.114914.72285HepG2HNRNPL
chr165333764653337695+CDS4.057694.01886HepG2LIN28B
chr165328834853288393+CDS,intron-Proximal3.6217111.34372HepG2BCLAF1
chr165333775253337820+CDS4.113217.45227K562RBM15
chr165326135353261375+CDS3.856375.37538K562ZNF622
chr165320450953204582+intron-Distal4.407424.39969K562TARDBP
chr165331488853314955+intron-Distal4.8368510.52606K562PTBP1
chr165328155253281738+intron-Distal5.5887812.51380K562KHSRP
chr165309029353090347+intron-Distal4.245038.33739HepG2QKI
chr165318628053186335+intron-Distal4.6021410.47564HepG2HNRNPM
chr165320607553206128+intron-Distal4.322905.41154K562HNRNPL
chr165330986153310038+intron-Distal5.4501310.58401HepG2QKI
chr165320431053204461+intron-Distal4.070523.66668K562KHSRP
chr165317143053171498+intron-Distal4.227573.77802HepG2U2AF2
chr165330992853310066+intron-Distal3.741739.18800HepG2HNRNPL
chr165311668853116841+intron-Distal4.135383.91009K562HNRNPK
chr165328302853283119+intron-Distal4.007033.24603K562KHSRP
chr165318426453184373+intron-Distal3.607853.06150K562KHSRP
chr165320580853205854+intron-Distal4.421875.96592K562HNRNPL
chr165325673653256851+intron-Distal,intron-Proximal4.066315.97994K562AQR
chr165331008753310144+intron-Distal3.853105.65979HepG2PTBP1
chr165316529653165351+intron-Distal,intron-Proximal4.900905.49507HepG2FKBP4
chr165316606853166219+intron-Distal3.842907.05443K562KHSRP
chr165313129053131375+intron-Distal5.3170821.62382K562PTBP1
chr165312570653125806+intron-Distal4.6772525.87079HepG2PCBP2
chr165316060053160641+intron-Distal3.953843.53723HepG2PTBP1
chr165310442153104488+intron-Distal4.8748211.52400K562PTBP1
chr165316526753165371+intron-Distal,intron-Proximal4.203124.97257HepG2XRN2
chr165316527853165380+intron-Distal,intron-Proximal4.212467.50411HepG2FAM120A
chr165310229353102410+intron-Distal3.3214612.67965HepG2HNRNPL
chr165310293053103000+intron-Distal4.458545.65358HepG2HNRNPC
chr165316575453165829+intron-Distal3.274715.41408K562NONO
chr165316584453165902+intron-Distal3.813758.49125HepG2NKRF
chr165310250653102600+intron-Distal3.067235.01860HepG2HNRNPL
chr165316584053165904+intron-Distal3.7264014.08936HepG2CSTF2T
chr165308999853090057+intron-Distal3.092614.55634HepG2QKI
chr165331608353316165+intron-Distal3.309205.25804HepG2HNRNPL
chr165316531153165386+intron-Distal4.4201321.41160HepG2CSTF2T
chr165320571053205752+intron-Distal3.094555.28802HepG2HNRNPL
chr165310563753105722+intron-Distal3.804344.63118HepG2HNRNPM
chr165309011753090205+intron-Distal3.9504015.98088HepG2QKI
chr165326650353266697+intron-Distal3.617815.32884K562KHSRP
chr165310632553106374+intron-Distal3.153764.08009HepG2HNRNPC
chr165318589053185950+intron-Distal4.740065.42507HepG2MATR3
chr165311467153114762+intron-Distal3.893326.58297HepG2HNRNPK
chr165331749453317555+intron-Distal3.732124.67922K562PTBP1
chr165331674253316911+intron-Distal4.285553.72005K562MATR3
chr165320119953201258+intron-Distal3.727245.78005K562KHSRP
chr165318627953186332+intron-Distal4.227654.52011K562HNRNPM
chr165331057853310654+intron-Distal3.603625.80375HepG2PTBP1
chr165316537153165426+intron-Distal4.960265.28062HepG2XPO5
chr165326750453267589+intron-Distal4.171514.12666HepG2HNRNPK
chr165316527953165366+intron-Distal,intron-Proximal3.585424.50953K562CSTF2T
chr165331608353316141+intron-Distal3.792113.09122HepG2PTBP1
chr165320843353208529+intron-Distal4.135605.51743K562QKI
chr165331058453310664+intron-Distal6.2236216.14543K562PTBP1
chr165331608053316172+intron-Distal3.272484.05663K562HNRNPL
chr165316576653165830+intron-Distal3.6803611.83100HepG2CSTF2T
chr165323469853234875+intron-Distal3.669265.29549HepG2HNRNPL
chr165318590453185960+intron-Distal4.021133.91772K562TARDBP
chr165316584653165898+intron-Distal3.133443.14777HepG2GTF2F1
chr165334214753342230+intron-Distal3.470036.57673K562KHSRP
chr165331489053314952+intron-Distal4.363667.88692HepG2PTBP1
chr165309012253090175+intron-Distal5.490846.85401K562QKI
chr165318513053185207+intron-Distal3.803595.07626HepG2PTBP1
chr165320111253201139+intron-Distal3.024143.46531K562KHSRP
chr165313128953131321+intron-Distal3.995767.92999HepG2PTBP1
chr165310229953102406+intron-Distal4.811247.69118K562HNRNPL
chr165318464653184742+intron-Distal4.182983.24322HepG2MATR3
chr165311589053115993+intron-Distal5.018627.20766K562TARDBP
chr165334221853342323+intron-Distal4.411974.53660HepG2KHSRP
chr165316584853165891+intron-Distal4.215194.59677K562DROSHA
chr165316556453165625+intron-Distal4.5028611.28783HepG2CSTF2T
chr165311257853112703+intron-Distal5.126888.83475HepG2HNRNPK
chr165308965753089710+intron-Distal4.3043614.48270HepG2QKI
chr165316530153165351+intron-Distal,intron-Proximal4.202774.14056K562EWSR1
chr165318513453185217+intron-Distal5.6310511.88842HepG2PCBP2
chr165313383653133931+intron-Distal3.475684.35431HepG2PRPF4
chr165318816453188217+intron-Distal4.8145711.16135HepG2QKI
chr165334223053342337+intron-Distal3.955847.05443K562KHSRP
chr165316527953165387+intron-Distal,intron-Proximal3.416185.76899HepG2EFTUD2
chr165331992953320081+intron-Distal,intron-Proximal3.731545.82781HepG2KHSRP
chr165319291253192992+intron-Distal4.665334.54503HepG2ILF3
chr165310702753107102+intron-Distal4.5037316.12609HepG2QKI
chr165316527653165360+intron-Distal,intron-Proximal5.096448.53239K562DROSHA
chr165316530453165355+intron-Distal,intron-Proximal4.447215.44815HepG2PRPF4
chr165316528453165382+intron-Distal,intron-Proximal3.838487.24772K562AKAP8L
chr165309485153094900+intron-Distal3.071833.58752HepG2ILF3
chr165308971053089771+intron-Distal6.6229621.21085HepG2QKI
chr165320585953205957+intron-Distal5.7039115.12797K562HNRNPL
chr165326749653267612+intron-Distal5.6193218.97112HepG2PCBP2
chr165320584653205939+intron-Distal5.5532112.61036HepG2HNRNPL
chr165310331653103384+intron-Distal3.057104.70417HepG2HNRNPK
chr165318589053185959+intron-Distal3.829816.02877HepG2SUGP2
chr165313132153131369+intron-Distal4.1624714.63914HepG2PTBP1
chr165320841753208476+intron-Distal3.632214.72639K562KHSRP
chr165310440853104492+intron-Distal5.205098.13723HepG2PTBP1
chr165332205653322128+intron-Distal4.284663.49003K562PRPF8
chr165330790853308037+intron-Distal,intron-Proximal3.901583.42844K562KHSRP
chr165316844953168535+intron-Distal4.172604.79379K562KHSRP
chr165320572553205808+intron-Distal4.020716.87274K562HNRNPL
chr165328173853281821+intron-Distal3.152833.90146K562KHSRP
chr165310729753107426+intron-Distal5.3273110.78698K562TARDBP
chr165328757853287688+intron-Distal3.690503.12651K562SAFB2
chr165316549053165556+intron-Distal3.6465810.89314HepG2CSTF2T
chr165333459753334646+intron-Distal4.392643.12827HepG2U2AF2
chr165331675253316812+intron-Distal3.554053.76275K562PTBP1
chr165320832953208417+intron-Distal3.085343.76473K562KHSRP
chr165318589553185955+intron-Distal4.007023.01456K562EXOSC5
chr165310330353103432+intron-Distal4.060063.83958HepG2QKI
chr165317692653176989+intron-Distal3.778593.05187HepG2QKI
chr165328142553281552+intron-Distal,intron-Proximal3.555849.48651K562KHSRP
chr165316624753166351+intron-Distal4.020054.77518HepG2U2AF2
chr165319856853198689+intron-Distal3.069425.38856HepG2ILF3
chr165316584253165906+intron-Distal4.0979610.90782K562NONO
chr165328758753287688+intron-Distal3.589504.16915HepG2HLTF
chr165311416653114247+intron-Distal3.273925.81029HepG2HNRNPC
chr165316557153165620+intron-Distal4.620645.86222K562NONO
chr165312572653125834+intron-Distal6.3855318.69613K562PTBP1
chr165320549253205585+intron-Distal3.822323.16986HepG2QKI
chr165331428253314464+intron-Distal3.300513.73364K562SAFB2
chr165308978353089844+intron-Distal3.105175.68244HepG2QKI
chr165316526453165311+intron-Distal,intron-Proximal6.1638219.21475HepG2CSTF2T
chr165332002653320092+intron-Distal,intron-Proximal3.082313.29251K562KHSRP
chr165320123953201314+intron-Distal3.362203.29213HepG2KHSRP
chr165318590353185961+intron-Distal3.683444.44706K562EIF4G2
chr165312580653125836+intron-Distal3.630663.00914HepG2PTBP1
chr165334188153341941+intron-Distal,intron-Proximal4.291915.20806K562TIA1
chr165320575253205767+intron-Distal3.045404.07962HepG2HNRNPL
chr165334233753342486+intron-Distal3.987667.90970K562KHSRP
chr165312900753129072+intron-Distal5.4876710.24238HepG2PCBP2
chr165311671153116836+intron-Distal3.193473.60809HepG2HNRNPK
chr165321190453212095+intron-Distal3.878373.40087HepG2RBFOX2
chr165320113953201199+intron-Distal4.954108.94695K562KHSRP
chr165309023153090265+intron-Distal4.749325.31925HepG2QKI
chr165320846853208519+intron-Distal4.352543.83958HepG2QKI
chr165312571653125806+intron-Distal6.5048818.93712HepG2PTBP1
chr165308988853089925+intron-Distal3.686945.42334HepG2QKI
chr165330992253310055+intron-Distal3.031455.22824K562HNRNPL
chr165320585553205927+intron-Distal4.0735413.10629K562AGGF1
chr165319147453191539+intron-Proximal4.812487.38287HepG2TIAL1
chr165326138353261444+intron-Proximal3.376853.69252K562EFTUD2
chr165319147453191527+intron-Proximal4.878327.46282HepG2TIA1
chr165319148053191550+intron-Proximal3.991616.33374K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHD9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHD9 is not available on ENCORE database.

  • 83 RBPs can affect the levels of CHD9.  








The Knockdown/knockout RNA-Seq assay for CHD9 is not available on ENCORE database.





83 RBPs can affect the gene expression of CHD9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHD9ENSG00000177200.11811.311301282.77390-0.660907.365605.83980HepG2ADAR
CHD9ENSG00000177200.11600.529901134.70940-0.918009.036607.29920HepG2BCCIP
CHD9ENSG00000177200.111213.012701645.45910-0.439904.259103.53450HepG2BOP1
CHD9ENSG00000177200.111277.433001505.37030-0.236902.816302.14630HepG2CKAP4
CHD9ENSG00000177200.111022.349201473.08110-0.526902.877902.09700HepG2CNOT7
CHD9ENSG00000177200.111113.913901392.55180-0.322104.473003.44450HepG2DDX19B
CHD9ENSG00000177200.11853.437001291.66690-0.597909.700408.44890HepG2DNAJC21
CHD9ENSG00000177200.11984.445301280.31660-0.379105.808004.91490HepG2DNAJC2
CHD9ENSG00000177200.111918.282401439.003600.414602.402501.76020HepG2EIF4B
CHD9ENSG00000177200.111936.782301456.915300.410606.226305.06050HepG2EIF4G1
CHD9ENSG00000177200.111061.043201471.33500-0.471605.232804.08480HepG2EWSR1
CHD9ENSG00000177200.111214.126201889.69330-0.638206.147805.04440HepG2FIP1L1
CHD9ENSG00000177200.111292.59650873.117100.565906.635005.44790HepG2FUBP3
CHD9ENSG00000177200.11673.692501304.04210-0.9528016.0048014.65930HepG2HNRNPA1
CHD9ENSG00000177200.11933.635501450.52410-0.635607.784606.66910HepG2HNRNPC
CHD9ENSG00000177200.111105.748901400.46930-0.340902.467401.80550HepG2HNRNPK
CHD9ENSG00000177200.111091.757301345.40090-0.301404.244803.42370HepG2HNRNPL
CHD9ENSG00000177200.111016.007301440.93280-0.504108.741307.71000HepG2HNRNPU
CHD9ENSG00000177200.111129.184001406.20190-0.316502.080701.48620HepG2IGF2BP2
CHD9ENSG00000177200.111255.384601471.86200-0.229502.842602.10130HepG2ILF2
CHD9ENSG00000177200.111843.667501529.716200.269202.405401.64850HepG2MSI2
CHD9ENSG00000177200.112166.457301535.391000.496604.408803.61710HepG2NCBP2
CHD9ENSG00000177200.111169.294901464.48960-0.324803.476402.62280HepG2NOL12
CHD9ENSG00000177200.111841.749901449.013300.345902.705401.96480HepG2NSUN2
CHD9ENSG00000177200.111835.795901367.518100.424703.407002.61080HepG2PABPC4
CHD9ENSG00000177200.111654.297101318.723700.327004.350203.61880HepG2PCBP1
CHD9ENSG00000177200.111006.063001285.19370-0.353303.862803.00540HepG2PPIL4
CHD9ENSG00000177200.111624.700701359.039200.257502.739701.96880HepG2PRPF4
CHD9ENSG00000177200.111133.735801533.64550-0.435907.501506.57070HepG2PUS1
CHD9ENSG00000177200.112187.144901453.228300.5897010.613109.50380HepG2QKI
CHD9ENSG00000177200.111594.524501961.63650-0.298903.601703.03210HepG2RBM22
CHD9ENSG00000177200.111794.165301318.920400.443905.104704.21490HepG2RBM25
CHD9ENSG00000177200.111659.558001390.902500.254702.031701.49240HepG2RECQL
CHD9ENSG00000177200.111871.367501363.028100.457202.496501.59740HepG2RPS10
CHD9ENSG00000177200.11784.461901010.79380-0.365702.154801.60590HepG2RPS19
CHD9ENSG00000177200.111241.12100851.579500.543304.664003.67360HepG2RRP9
CHD9ENSG00000177200.111949.338701340.291300.540307.634606.55810HepG2SLBP
CHD9ENSG00000177200.111084.530801496.41380-0.464409.258208.19220HepG2SMN1
CHD9ENSG00000177200.111267.065501458.20550-0.202701.848101.43930HepG2SRSF1
CHD9ENSG00000177200.111714.068601380.193500.312503.767303.05830HepG2SRSF5
CHD9ENSG00000177200.111738.228001186.345300.551008.453107.58200HepG2SRSF9
CHD9ENSG00000177200.11947.347801286.29300-0.441302.718901.62880HepG2STIP1
CHD9ENSG00000177200.111989.217001569.716300.341605.371204.55620HepG2SUCLG1
CHD9ENSG00000177200.111878.674401310.748300.519208.605007.70550HepG2TAF15
CHD9ENSG00000177200.111975.264201592.824400.310402.455301.76680HepG2TARDBP
CHD9ENSG00000177200.111716.823601204.339400.511406.937205.61990HepG2TIA1
CHD9ENSG00000177200.111083.396901400.06620-0.369903.811703.24510HepG2TIAL1
CHD9ENSG00000177200.111655.319001365.635800.277402.146001.38360HepG2TUFM
CHD9ENSG00000177200.111911.999701445.445300.403502.621801.80660HepG2UBE2L3
CHD9ENSG00000177200.11417.10660656.13950-0.653605.024603.99540HepG2UCHL5
CHD9ENSG00000177200.11590.150501017.19540-0.785405.042003.66260HepG2UPF2
CHD9ENSG00000177200.111364.436802067.39260-0.5995012.9861010.93920HepG2UTP18
CHD9ENSG00000177200.11803.440901941.88620-1.2732051.7728049.70070HepG2UTP3
CHD9ENSG00000177200.11532.398001093.30450-1.0381012.9180011.36800HepG2XRN2
CHD9ENSG00000177200.111641.526801341.240200.291403.974303.19310HepG2ZC3H8
CHD9ENSG00000177200.112485.603902212.107700.168102.167801.66660HepG2ZNF622
CHD9ENSG00000177200.112411.413903227.30440-0.420508.773907.83960K562AGGF1
CHD9ENSG00000177200.112656.642003546.23890-0.416703.766302.58000K562AKAP8
CHD9ENSG00000177200.112650.950103358.13660-0.341203.344502.62540K562AKAP8L
CHD9ENSG00000177200.112672.426403523.45620-0.398806.542705.05880K562ATP5C1
CHD9ENSG00000177200.111492.858101821.72980-0.287203.516402.42820K562BCLAF1
CHD9ENSG00000177200.113061.158203856.87030-0.333404.049302.58260K562CCDC124
CHD9ENSG00000177200.111121.105201382.05310-0.301902.964901.87130K562CSTF2
CHD9ENSG00000177200.112452.032103613.72010-0.5595012.8290010.63280K562DKC1
CHD9ENSG00000177200.112385.938901846.129700.370003.619002.68250K562EIF4A3
CHD9ENSG00000177200.111613.144002721.45190-0.7545012.5256010.59760K562FIP1L1
CHD9ENSG00000177200.113118.441002096.866700.572504.739203.75690K562G3BP2
CHD9ENSG00000177200.111698.266903160.75900-0.8962013.0387011.37730K562GRSF1
CHD9ENSG00000177200.111257.378401801.64620-0.518905.615204.79410K562HNRNPC
CHD9ENSG00000177200.111304.235301608.62580-0.302602.419001.36530K562HNRNPF
CHD9ENSG00000177200.111267.555802238.41450-0.8204010.728008.60750K562HNRNPM
CHD9ENSG00000177200.112205.769903689.73720-0.7422012.5542010.89670K562HSPD1
CHD9ENSG00000177200.112522.631403411.46500-0.435505.574403.86840K562MAK16
CHD9ENSG00000177200.113198.765103992.44940-0.319803.816402.71970K562MBNL1
CHD9ENSG00000177200.111807.829802198.16750-0.282002.468501.64560K562METAP2
CHD9ENSG00000177200.111280.532001660.95420-0.375302.605201.36440K562NONO
CHD9ENSG00000177200.111350.877901773.51390-0.392703.204401.63080K562NUSAP1
CHD9ENSG00000177200.111677.713503089.35940-0.8808016.2069013.67110K562PPIG
CHD9ENSG00000177200.111120.989301615.29600-0.527004.055102.93160K562PSIP1
CHD9ENSG00000177200.111651.063202405.58140-0.543008.239207.13480K562PTBP1
CHD9ENSG00000177200.112596.268203330.49240-0.359303.317902.73180K562PUS1
CHD9ENSG00000177200.112773.251603244.94510-0.226602.366201.81070K562RBM15
CHD9ENSG00000177200.111877.135702307.13490-0.297602.338501.57050K562RBM22
CHD9ENSG00000177200.111629.330402181.08430-0.420805.412904.18850K562SF3B4
CHD9ENSG00000177200.11986.239201396.79490-0.502105.043803.53460K562SRFBP1
CHD9ENSG00000177200.111979.882801589.277400.316902.226601.32080K562SUPV3L1
CHD9ENSG00000177200.111868.778702302.31740-0.301002.957702.10810K562TIA1
CHD9ENSG00000177200.113164.340902622.077100.271104.594403.52530K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHD9 is not available on ENCORE database.





9 RBPs can affect the splicing of CHD9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECHD9ENSG00000177200.11chr16+533487345334895653348288533484285335212353352252-0.156000.001430.02791excludedK562SRSF1
SECHD9ENSG00000177200.11chr16+5335372453353863533521235335225253355437533554750.329000.000250.00670includedK562SF3B4
SECHD9ENSG00000177200.11chr16+5335372453353863533521235335225253355437533554750.177000.000190.07996includedK562TIA1
SECHD9ENSG00000177200.11chr16+5313305453133180530889445308898953155211531560860.251000.002950.07101includedK562AKAP8L
SECHD9ENSG00000177200.11chr16+5326580253265936532655585326569653269096532692180.168000.000000.00009includedHepG2U2AF2
SECHD9ENSG00000177200.11chr16+533256365332567953321868533219265332674453326964-0.168000.004680.04404excludedK562AQR
SECHD9ENSG00000177200.11chr16+5326580253265936532655585326569653269096532692180.061000.001770.03181includedK562U2AF2
SECHD9ENSG00000177200.11chr16+533308675333107053326744533269645333763153338537-0.086000.003690.07251excludedK562RBM15
SECHD9ENSG00000177200.11chr16+5335372453353863533521235335225253355437533554750.185000.002010.06773includedK562PTBP1
A3SSCHD9ENSG00000177200.11chr16+5334011353340309533401455334030953337631533385370.089000.004710.02743longerK562AQR
A3SSCHD9ENSG00000177200.11chr16+5334871053348956533487345334895653348288533484280.086000.000900.00630longerK562AQR
A5SSCHD9ENSG00000177200.11chr16+533415925334186553341592533418175334259753342766-0.377000.000840.06161shorterK562HNRNPC
A5SSCHD9ENSG00000177200.11chr16+533415925334186553341592533418175334259753342766-0.290000.001550.07394shorterK562SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHD9 is not avaliable on ENCORE database.