VPS13D

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VPS13D	ENSG00000048707.15	6.34	6.82	6.58	ENCSR000AEF
HepG2	VPS13D	ENSG00000048707.15	6.47	6.75	6.61	ENCSR985KAT
K562	VPS13D	ENSG00000048707.15	29.87	31.35	30.61	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VPS13D is not avaliable on ENCORE database.

Proteins bound to RNA

VPS13D RNA is bound by 43 proteins.

eCLIP assay for VPS13D is not avaliable on ENCORE database.

43 proteins are bound to VPS13D RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	12569347	12569459	+	3'-UTR	5.96270	86.29805	K562	PUM2
chr1	12557583	12557672	+	3'-UTR,CDS	3.52331	8.10056	K562	FXR2
chr1	12570170	12570208	+	3'-UTR	4.74098	4.40829	K562	ZC3H11A
chr1	12570581	12570647	+	3'-UTR	3.68564	6.70118	K562	TARDBP
chr1	12569273	12569326	+	3'-UTR	4.12047	5.46178	K562	ZC3H11A
chr1	12569485	12569541	+	3'-UTR	3.32780	4.70224	K562	KHSRP
chr1	12569247	12569368	+	3'-UTR	3.21014	3.56007	K562	DDX6
chr1	12569907	12569951	+	3'-UTR	3.39972	4.94579	K562	ZC3H11A
chr1	12294319	12294414	+	5'-UTR,CDS	4.74075	12.34598	K562	DDX24
chr1	12294298	12294358	+	5'-UTR,CDS	3.44217	10.50393	K562	ZNF622
chr1	12405410	12405457	+	CDS,intron-Proximal	4.63750	27.89225	K562	SF3B4
chr1	12321016	12321094	+	CDS	3.70020	3.34184	HepG2	GRWD1
chr1	12318102	12318151	+	CDS	4.07073	8.98140	K562	DDX24
chr1	12336733	12336785	+	CDS	4.28443	5.48415	HepG2	EIF3H
chr1	12414134	12414161	+	CDS	3.77444	4.70460	K562	DDX24
chr1	12336733	12336781	+	CDS	3.90562	7.74600	K562	FXR2
chr1	12438482	12438523	+	CDS	6.06117	8.32974	K562	DDX24
chr1	12348322	12348340	+	CDS	4.43056	3.71570	HepG2	BCLAF1
chr1	12353716	12353762	+	CDS,intron-Proximal	3.20843	4.78418	HepG2	EIF3H
chr1	12336727	12336820	+	CDS	5.02217	14.86012	K562	FMR1
chr1	12322033	12322067	+	CDS	3.56836	3.99908	K562	BUD13
chr1	12520255	12520266	+	CDS,intron-Proximal	5.30800	5.93845	K562	DDX24
chr1	12433804	12433841	+	CDS,intron-Proximal	3.94114	6.22473	K562	FMR1
chr1	12364681	12364777	+	CDS	3.39869	3.59112	HepG2	PPIG
chr1	12321939	12322009	+	CDS,intron-Proximal	3.23056	3.76069	K562	U2AF1
chr1	12405410	12405471	+	CDS,intron-Proximal	4.59699	11.04020	K562	U2AF1
chr1	12321959	12322010	+	CDS	4.86234	5.76079	K562	FXR2
chr1	12406661	12406686	+	CDS,intron-Proximal	4.30535	3.45943	HepG2	BCLAF1
chr1	12408915	12408937	+	CDS	3.19016	8.36736	K562	U2AF2
chr1	12516164	12516186	+	CDS,intron-Proximal	5.57828	6.53290	K562	DDX24
chr1	12321967	12322019	+	CDS	3.18740	6.19551	K562	BUD13
chr1	12337076	12337169	+	CDS	3.25503	3.84837	K562	GRWD1
chr1	12318016	12318057	+	CDS	3.62933	5.26861	K562	DDX24
chr1	12337873	12337924	+	CDS	5.19222	4.77840	HepG2	EIF3H
chr1	12343222	12343289	+	CDS	3.64379	4.00333	HepG2	EIF3H
chr1	12333131	12333192	+	CDS	3.37282	6.19339	HepG2	BCLAF1
chr1	12304593	12304663	+	CDS,intron-Proximal	3.28705	16.85674	K562	ZNF622
chr1	12304592	12304612	+	CDS,intron-Proximal	3.58269	10.27359	K562	UCHL5
chr1	12422726	12422791	+	CDS,intron-Proximal	4.35564	7.08280	K562	SF3B4
chr1	12335879	12335923	+	CDS,intron-Proximal	3.73036	9.87923	K562	DDX24
chr1	12428527	12428572	+	CDS	4.13948	8.43090	K562	DDX24
chr1	12304650	12304673	+	CDS	5.45574	9.35594	K562	UCHL5
chr1	12327942	12327978	+	CDS,intron-Proximal	4.95278	5.75302	HepG2	EIF3H
chr1	12304442	12304494	+	CDS,intron-Proximal	3.88385	12.16000	K562	UCHL5
chr1	12414108	12414144	+	CDS	4.69183	6.09979	K562	FXR2
chr1	12381853	12381922	+	CDS,intron-Proximal	3.49540	5.24083	K562	U2AF2
chr1	12389958	12390011	+	CDS,intron-Proximal	3.67891	4.65388	K562	PRPF8
chr1	12321938	12321964	+	CDS,intron-Proximal	3.59047	3.02321	K562	U2AF2
chr1	12304572	12304673	+	CDS,intron-Proximal	3.94749	7.24665	K562	GPKOW
chr1	12389887	12389923	+	CDS	3.86084	5.29272	K562	BUD13
chr1	12321959	12322016	+	CDS	5.74075	13.98340	K562	DDX24
chr1	12309306	12309353	+	CDS	3.29239	8.20368	K562	ZNF622
chr1	12353749	12353759	+	CDS	4.23925	4.67299	K562	DDX24
chr1	12304593	12304625	+	CDS,intron-Proximal	5.09311	5.70640	HepG2	BCLAF1
chr1	12337872	12337926	+	CDS	3.25716	4.34695	HepG2	BCLAF1
chr1	12405413	12405512	+	CDS,intron-Proximal	5.56182	30.12631	K562	U2AF2
chr1	12381807	12381879	+	CDS,intron-Proximal	5.80164	22.13747	K562	SF3B4
chr1	12393405	12393422	+	CDS	3.15233	5.66840	K562	ZNF622
chr1	12429589	12429640	+	CDS	5.25588	8.22878	K562	FXR2
chr1	12309369	12309394	+	CDS	4.37186	7.51551	K562	UCHL5
chr1	12321088	12321151	+	CDS	3.80475	4.56106	HepG2	EIF3H
chr1	12342829	12342916	+	CDS	3.38730	3.61076	HepG2	HLTF
chr1	12378128	12378172	+	CDS,intron-Proximal	4.62347	4.29511	HepG2	EIF3H
chr1	12321047	12321110	+	CDS	4.84994	5.86613	HepG2	PPIG
chr1	12327939	12327977	+	CDS	4.48196	6.28735	K562	DDX24
chr1	12322055	12322071	+	CDS	5.17648	5.34688	K562	DDX24
chr1	12302583	12302640	+	CDS	3.59045	10.52099	K562	DDX24
chr1	12418614	12418621	+	CDS	4.78827	12.16683	K562	YBX3
chr1	12476813	12476865	+	CDS	3.88769	7.48534	K562	LIN28B
chr1	12342835	12342899	+	CDS	4.18752	6.33531	HepG2	EIF3H
chr1	12343270	12343355	+	CDS	3.24212	3.02331	K562	FXR1
chr1	12364547	12364604	+	CDS,intron-Proximal	3.54474	7.52070	K562	SF3B4
chr1	12337575	12337631	+	CDS	3.98402	4.93978	HepG2	BCLAF1
chr1	12322128	12322177	+	CDS,intron-Proximal	3.63568	4.06013	K562	PRPF8
chr1	12317043	12317110	+	CDS,intron-Proximal	5.64379	8.22235	HepG2	EIF3H
chr1	12353671	12353710	+	CDS	5.18492	7.89484	K562	FXR2
chr1	12408879	12409019	+	CDS,intron-Proximal	3.46775	4.70634	HepG2	EIF3D
chr1	12353579	12353642	+	CDS,intron-Proximal	5.33172	9.49599	K562	FMR1
chr1	12309311	12309369	+	CDS	3.33975	7.96329	K562	UCHL5
chr1	12333134	12333191	+	CDS	4.82421	14.63362	K562	DDX24
chr1	12568888	12568968	+	CDS,intron-Proximal	6.63040	45.74655	K562	SF3B4
chr1	12364724	12364767	+	CDS	3.19153	4.34695	HepG2	BCLAF1
chr1	12328762	12328858	+	CDS,intron-Proximal	4.85742	17.30887	K562	DDX24
chr1	12408878	12408971	+	CDS,intron-Proximal	3.05149	14.14327	K562	DDX24
chr1	12520316	12520341	+	CDS	3.77832	5.77244	K562	UCHL5
chr1	12317140	12317226	+	CDS,intron-Proximal	3.24665	3.90146	K562	KHSRP
chr1	12520207	12520267	+	CDS,intron-Proximal	3.83814	5.02403	K562	SF3B4
chr1	12304414	12304494	+	CDS,intron-Proximal	5.54908	9.32793	HepG2	BCLAF1
chr1	12408880	12408967	+	CDS	3.80062	6.39464	HepG2	BCLAF1
chr1	12328773	12328842	+	CDS	3.08950	3.07152	HepG2	HLTF
chr1	12446274	12446330	+	CDS	4.79079	9.64961	K562	DDX24
chr1	12320786	12320852	+	CDS,intron-Proximal	3.65932	24.76356	K562	DDX24
chr1	12389923	12389950	+	CDS	5.63602	7.12981	K562	DDX24
chr1	12304612	12304650	+	CDS	4.64680	14.47660	K562	UCHL5
chr1	12337609	12337662	+	CDS	4.28649	5.02066	HepG2	EIF3H
chr1	12516042	12516126	+	CDS,intron-Proximal	3.53355	8.69261	K562	BUD13
chr1	12327001	12327047	+	CDS	5.23925	10.42419	K562	DDX24
chr1	12316556	12316603	+	CDS,intron-Proximal	3.97385	10.58560	K562	AQR
chr1	12337808	12337905	+	CDS	3.23593	5.29881	K562	ZNF800
chr1	12418559	12418606	+	CDS	5.13254	9.25096	K562	DDX24
chr1	12351074	12351076	+	CDS	4.21123	3.44423	K562	BUD13
chr1	12333062	12333109	+	CDS	3.56149	9.18311	K562	UCHL5
chr1	12368622	12368659	+	CDS	4.79264	6.23448	K562	FXR2
chr1	12316377	12316425	+	CDS,intron-Proximal	4.04884	3.80401	K562	SRSF1
chr1	12416036	12416087	+	CDS	3.32243	7.86771	K562	ZNF622
chr1	12337802	12337851	+	CDS	4.95480	12.26327	K562	FXR2
chr1	12379502	12379565	+	CDS,intron-Proximal	3.77672	5.47851	K562	SF3B4
chr1	12320778	12320852	+	CDS,intron-Proximal	3.10586	14.02604	K562	UCHL5
chr1	12383772	12383895	+	CDS,intron-Proximal	3.95862	8.91060	K562	PRPF8
chr1	12343380	12343396	+	CDS	4.55883	3.33922	HepG2	EIF3H
chr1	12336551	12336588	+	CDS	5.04747	5.26450	HepG2	EIF3H
chr1	12401784	12401840	+	CDS,intron-Proximal	3.58374	8.58414	K562	SF3B4
chr1	12368457	12368491	+	CDS,intron-Proximal	4.66736	4.13847	K562	AQR
chr1	12317043	12317141	+	CDS,intron-Proximal	3.01271	6.00788	HepG2	PPIG
chr1	12395793	12395903	+	CDS,intron-Proximal	4.70481	4.07830	K562	SRSF1
chr1	12378149	12378213	+	CDS	4.06405	3.73851	K562	FXR1
chr1	12408877	12408966	+	CDS,intron-Proximal	4.68087	4.56100	HepG2	FXR2
chr1	12336598	12336648	+	CDS	5.23098	5.75302	HepG2	EIF3H
chr1	12353579	12353618	+	CDS,intron-Proximal	4.08365	6.87424	K562	BUD13
chr1	12364674	12364768	+	CDS	3.93306	10.51594	HepG2	EIF3H
chr1	12339516	12339597	+	CDS,intron-Proximal	4.35334	4.98250	K562	AQR
chr1	12327901	12327920	+	CDS,intron-Proximal	3.88400	4.66686	K562	DDX24
chr1	12337807	12337840	+	CDS	4.00624	5.48415	HepG2	EIF3H
chr1	12316532	12316560	+	CDS	4.48402	4.04372	HepG2	BCLAF1
chr1	12321104	12321204	+	CDS	4.37316	10.53109	K562	DDX24
chr1	12304338	12304389	+	CDS	3.84354	11.82968	K562	DDX24
chr1	12335929	12335997	+	CDS	5.22875	5.26450	HepG2	EIF3H
chr1	12336570	12336599	+	CDS	3.23465	5.44868	K562	ZNF622
chr1	12337883	12337929	+	CDS	3.81368	4.39734	K562	XRCC6
chr1	12416459	12416486	+	CDS	3.35393	4.63145	K562	BUD13
chr1	12353663	12353757	+	CDS	4.17508	4.11230	K562	FXR1
chr1	12337801	12337856	+	CDS	5.63612	9.49599	K562	FMR1
chr1	12343298	12343341	+	CDS	3.90137	3.28989	K562	RBM15
chr1	12343289	12343362	+	CDS	4.09783	7.12716	HepG2	EIF3H
chr1	12567146	12567153	+	CDS,intron-Proximal	3.80630	4.83230	K562	AQR
chr1	12336781	12336833	+	CDS	4.30743	7.66839	K562	FXR2
chr1	12321006	12321072	+	CDS	3.11870	4.56572	K562	ZNF800
chr1	12331053	12331106	+	CDS	3.54758	9.91765	K562	DDX24
chr1	12317143	12317159	+	CDS,intron-Proximal	4.08240	7.30031	K562	AQR
chr1	12368520	12368581	+	CDS	3.80663	3.93112	K562	RBM15
chr1	12333060	12333106	+	CDS	4.80475	4.29511	HepG2	EIF3H
chr1	12317043	12317069	+	CDS,intron-Proximal	3.63011	3.87469	HepG2	BCLAF1
chr1	12321034	12321093	+	CDS	3.25266	4.56058	HepG2	BCLAF1
chr1	12337701	12337748	+	CDS	4.03378	5.35703	HepG2	BCLAF1
chr1	12405538	12405567	+	CDS,intron-Proximal	3.63609	3.68471	HepG2	BCLAF1
chr1	12364688	12364756	+	CDS	3.25319	6.45164	K562	BUD13
chr1	12353710	12353762	+	CDS,intron-Proximal	4.03648	11.06479	K562	FXR2
chr1	12321004	12321109	+	CDS,intron-Proximal	4.31600	3.55983	HepG2	HLTF
chr1	12337994	12338054	+	CDS	3.22640	7.13696	K562	RBM15
chr1	12379684	12379765	+	CDS,intron-Proximal	3.31636	7.26120	K562	TIA1
chr1	12343656	12343706	+	CDS	4.26352	6.89360	HepG2	EIF3H
chr1	12313845	12313926	+	CDS,intron-Proximal	4.15353	3.25843	K562	SRSF1
chr1	12422872	12422906	+	CDS	4.29386	4.15208	K562	RBM15
chr1	12516058	12516134	+	CDS,intron-Proximal	3.48994	13.64735	K562	ZNF622
chr1	12304657	12304720	+	CDS,intron-Proximal	5.42441	8.43521	K562	AQR
chr1	12433804	12433864	+	CDS,intron-Proximal	3.40363	7.43590	K562	FXR2
chr1	12317993	12318012	+	CDS	3.64847	3.99381	K562	BUD13
chr1	12320787	12320823	+	CDS	3.96759	3.05875	K562	RBM15
chr1	12313859	12313883	+	CDS	3.11934	4.26492	HepG2	BCLAF1
chr1	12429744	12429758	+	CDS,intron-Proximal	4.77444	6.93329	K562	DDX24
chr1	12516021	12516149	+	CDS,intron-Proximal	4.04054	14.06167	K562	AQR
chr1	12343285	12343356	+	CDS	4.09311	4.76554	HepG2	BCLAF1
chr1	12423244	12423304	+	CDS,intron-Proximal	5.23321	8.66757	K562	DDX24
chr1	12343372	12343417	+	CDS	3.17916	3.45280	HepG2	BCLAF1
chr1	12317071	12317136	+	CDS	3.82783	16.53477	K562	DDX24
chr1	12520332	12520391	+	CDS	4.82620	6.56513	K562	FXR2
chr1	12353540	12353613	+	CDS,intron-Proximal	4.53584	7.50107	K562	AQR
chr1	12320751	12320786	+	CDS	4.16325	7.88406	K562	DDX24
chr1	12338000	12338045	+	CDS	5.26136	7.80708	K562	FXR2
chr1	12304415	12304492	+	CDS	4.27093	16.44980	K562	DDX24
chr1	12387861	12387912	+	CDS,intron-Proximal	3.88483	3.92527	K562	FXR1
chr1	12336112	12336172	+	CDS	4.19754	4.15208	K562	RBM15
chr1	12446383	12446461	+	CDS,intron-Proximal	3.32891	5.32296	K562	PRPF8
chr1	12337813	12337865	+	CDS	4.09062	3.81597	K562	RBM15
chr1	12321004	12321080	+	CDS,intron-Proximal	4.76564	9.28872	HepG2	EIF3H
chr1	12439497	12439550	+	CDS,intron-Proximal	4.87488	5.69951	K562	AQR
chr1	12316516	12316560	+	CDS	3.93196	16.40089	K562	DDX24
chr1	12433868	12433894	+	CDS	3.34463	3.99381	K562	BUD13
chr1	12321020	12321104	+	CDS	5.05149	26.12573	K562	DDX24
chr1	12320770	12320847	+	CDS	3.51831	14.90066	K562	ZNF622
chr1	12371533	12371550	+	CDS	3.56792	7.86995	K562	YBX3
chr1	12304301	12304338	+	CDS,intron-Proximal	3.40119	9.87510	K562	DDX24
chr1	12428504	12428563	+	CDS,intron-Proximal	4.38840	4.90655	K562	U2AF2
chr1	12309347	12309395	+	CDS	3.64837	12.76389	K562	DDX24
chr1	12353578	12353652	+	CDS,intron-Proximal	5.26136	14.84324	K562	FXR2
chr1	12423159	12423182	+	CDS	3.53970	5.21950	K562	DDX24
chr1	12320778	12320854	+	CDS,intron-Proximal	4.48470	8.01466	HepG2	EIF3H
chr1	12378107	12378181	+	CDS,intron-Proximal	4.97436	7.60031	K562	U2AF2
chr1	12439636	12439699	+	CDS,intron-Proximal	3.82166	4.95247	K562	PRPF8
chr1	12337663	12337718	+	CDS	3.12768	6.69476	K562	BUD13
chr1	12351054	12351089	+	CDS,intron-Proximal	4.54363	5.42280	K562	FXR2
chr1	12516064	12516148	+	CDS,intron-Proximal	3.18284	5.04030	K562	GRWD1
chr1	12364707	12364755	+	CDS	4.84354	12.87221	K562	DDX24
chr1	12331179	12331264	+	CDS,intron-Proximal	3.95318	6.15234	K562	PRPF8
chr1	12321024	12321077	+	CDS	3.20506	12.84530	K562	ZNF622
chr1	12418621	12418653	+	CDS	4.35527	13.52024	K562	YBX3
chr1	12316389	12316420	+	CDS,intron-Proximal	4.13713	10.53109	K562	DDX24
chr1	12401888	12401915	+	CDS	3.62201	4.70460	K562	DDX24
chr1	12333062	12333104	+	CDS	3.61184	4.46864	HepG2	BCLAF1
chr1	12423173	12423221	+	CDS	3.44911	6.11658	K562	FXR2
chr1	12408876	12408951	+	CDS,intron-Proximal	3.05380	5.98757	K562	U2AF1
chr1	12328790	12328858	+	CDS	3.09862	7.74926	K562	UCHL5
chr1	12321004	12321020	+	CDS,intron-Proximal	3.30921	14.49165	K562	DDX24
chr1	12337081	12337137	+	CDS	3.89189	5.36555	HepG2	BCLAF1
chr1	12335958	12336051	+	CDS	3.99859	8.94445	HepG2	BCLAF1
chr1	12374375	12374466	+	CDS,intron-Proximal	3.69370	10.37024	K562	PRPF8
chr1	12414209	12414263	+	CDS	3.24079	6.39378	K562	FXR2
chr1	12333142	12333208	+	CDS,intron-Proximal	4.41918	3.81597	K562	RBM15
chr1	12304620	12304671	+	CDS	4.54128	16.62315	K562	DDX24
chr1	12328761	12328843	+	CDS,intron-Proximal	4.80475	10.25846	HepG2	EIF3H
chr1	12317042	12317071	+	CDS,intron-Proximal	3.22342	13.97074	K562	DDX24
chr1	12337860	12337921	+	CDS	4.18841	4.13050	K562	LIN28B
chr1	12446356	12446383	+	CDS	5.71168	5.93845	K562	DDX24
chr1	12321004	12321024	+	CDS,intron-Proximal	3.97161	6.25299	K562	ZNF622
chr1	12433804	12433829	+	CDS,intron-Proximal	4.36180	7.39346	K562	DDX24
chr1	12446289	12446308	+	CDS	3.37818	3.99381	K562	BUD13
chr1	12313846	12313884	+	CDS,intron-Proximal	3.66922	10.52099	K562	DDX24
chr1	12371924	12371971	+	CDS	4.00103	6.26935	K562	DDX24
chr1	12321151	12321198	+	CDS	4.74199	4.77840	HepG2	EIF3H
chr1	12479788	12479909	+	intron-Distal	4.25574	4.50052	K562	HNRNPL
chr1	12297082	12297242	+	intron-Distal	4.98141	8.06678	K562	TARDBP
chr1	12355954	12356011	+	intron-Distal	3.72431	6.83037	K562	KHSRP
chr1	12309405	12309553	+	intron-Distal,intron-Proximal	3.73148	4.10408	K562	KHSRP
chr1	12378472	12378654	+	intron-Distal,intron-Proximal	3.76099	9.17376	K562	U2AF2
chr1	12416608	12416730	+	intron-Distal,intron-Proximal	3.60855	10.15139	K562	EFTUD2
chr1	12567252	12567263	+	intron-Distal	4.14847	3.44423	K562	BUD13
chr1	12384873	12384953	+	intron-Distal	4.57473	4.70109	K562	U2AF2
chr1	12377931	12377991	+	intron-Distal	4.37997	5.68841	K562	KHSRP
chr1	12361242	12361354	+	intron-Distal	4.46014	7.44062	K562	QKI
chr1	12370952	12371053	+	intron-Distal	3.98479	14.77550	K562	ILF3
chr1	12396026	12396200	+	intron-Distal	3.11768	4.56635	K562	KHSRP
chr1	12378839	12378898	+	intron-Distal	3.12397	5.34873	K562	KHSRP
chr1	12493757	12493800	+	intron-Distal	4.78267	20.87086	K562	AQR
chr1	12393451	12393530	+	intron-Distal,intron-Proximal	4.00134	3.97489	K562	TIA1
chr1	12370944	12371012	+	intron-Distal	3.89515	4.62831	HepG2	PCBP2
chr1	12493715	12493757	+	intron-Distal	6.28242	36.23702	K562	AQR
chr1	12358904	12358963	+	intron-Distal	4.57348	6.34785	K562	KHSRP
chr1	12387581	12387628	+	intron-Distal,intron-Proximal	4.10439	5.63851	K562	SF3B4
chr1	12378486	12378670	+	intron-Distal,intron-Proximal	3.37606	3.93988	K562	U2AF1
chr1	12356089	12356145	+	intron-Distal	3.66771	6.48117	K562	KHSRP
chr1	12346094	12346167	+	intron-Distal	4.51957	4.30178	K562	PTBP1
chr1	12491518	12491567	+	intron-Distal	4.82477	4.48296	K562	LIN28B
chr1	12460051	12460130	+	intron-Distal	4.43622	5.46313	K562	KHSRP
chr1	12377846	12377931	+	intron-Distal	3.52975	5.38829	K562	KHSRP
chr1	12385055	12385129	+	intron-Distal	4.42828	3.91475	K562	PTBP1
chr1	12370550	12370671	+	intron-Distal	3.33768	5.03045	K562	ILF3
chr1	12494197	12494260	+	intron-Distal	4.18506	12.01630	K562	AQR
chr1	12309879	12309902	+	intron-Distal	4.63285	12.08125	K562	HNRNPL
chr1	12375020	12375134	+	intron-Distal	3.77903	7.05443	K562	KHSRP
chr1	12308962	12309072	+	intron-Distal	5.56684	7.15244	K562	QKI
chr1	12309855	12309879	+	intron-Distal	6.18868	19.33830	K562	HNRNPL
chr1	12381321	12381495	+	intron-Distal	3.02679	5.75743	K562	KHSRP
chr1	12403258	12403286	+	intron-Distal	3.23670	4.76426	K562	PRPF8
chr1	12378654	12378746	+	intron-Distal	3.20167	3.10539	K562	U2AF2
chr1	12313894	12313986	+	intron-Distal,intron-Proximal	4.02734	14.31911	K562	TIA1
chr1	12374070	12374129	+	intron-Distal,intron-Proximal	4.56853	4.54401	K562	KHSRP
chr1	12339349	12339485	+	intron-Distal,intron-Proximal	3.69406	3.26999	K562	KHSRP
chr1	12460972	12461107	+	intron-Distal	4.54663	4.71638	K562	HNRNPL
chr1	12356778	12356857	+	intron-Distal	5.06704	9.61540	K562	KHSRP
chr1	12309902	12309929	+	intron-Distal	3.55087	5.12089	K562	HNRNPL
chr1	12314118	12314148	+	intron-Distal	3.95874	5.35459	K562	KHSRP
chr1	12358993	12359079	+	intron-Distal	4.21057	9.73136	K562	KHSRP
chr1	12370866	12371012	+	intron-Distal	4.58918	6.34161	K562	PCBP1
chr1	12295663	12295752	+	intron-Distal	5.10594	8.53601	K562	FMR1
chr1	12309828	12309855	+	intron-Distal	4.72933	11.62731	K562	HNRNPL
chr1	12393810	12393900	+	intron-Distal	3.49905	5.38829	K562	KHSRP
chr1	12396511	12396578	+	intron-Distal	3.12196	7.14548	K562	RBFOX2
chr1	12384781	12384895	+	intron-Distal	4.26099	10.39396	K562	KHSRP
chr1	12356011	12356083	+	intron-Distal	5.49172	13.85867	K562	KHSRP
chr1	12317884	12317927	+	intron-Distal,intron-Proximal	3.74974	3.24603	K562	KHSRP
chr1	12421317	12421393	+	intron-Distal	3.49540	4.93120	K562	KHSRP
chr1	12309827	12309919	+	intron-Distal	3.96326	3.45317	HepG2	HNRNPL
chr1	12378905	12378976	+	intron-Distal	4.41482	11.37309	K562	KHSRP
chr1	12493713	12493715	+	intron-Distal	5.53835	22.30360	K562	AQR
chr1	12304744	12304818	+	intron-Distal,intron-Proximal	3.05495	3.67092	K562	PRPF8
chr1	12358766	12358804	+	intron-Distal	3.60910	3.02234	K562	KHSRP
chr1	12370947	12371031	+	intron-Distal	3.59165	5.87066	K562	CSTF2T
chr1	12347387	12347467	+	intron-Distal	3.70836	6.13897	K562	PTBP1
chr1	12295656	12295739	+	intron-Distal	3.73435	7.63581	K562	CSTF2T
chr1	12447940	12448035	+	intron-Distal	3.90984	3.04254	K562	UCHL5
chr1	12520471	12520629	+	intron-Distal,intron-Proximal	3.32688	8.86655	K562	KHSRP
chr1	12442103	12442198	+	intron-Distal	4.37234	3.78533	HepG2	PTBP1
chr1	12532452	12532588	+	intron-Distal	4.98968	6.77551	K562	MATR3
chr1	12379393	12379486	+	intron-Distal,intron-Proximal	3.63855	4.70224	K562	KHSRP
chr1	12397127	12397168	+	intron-Distal	3.42828	3.30744	K562	PTBP1
chr1	12403243	12403258	+	intron-Distal	3.70443	4.93376	K562	PRPF8
chr1	12416147	12416192	+	intron-Proximal	4.27856	6.77156	K562	AQR
chr1	12359161	12359224	+	intron-Proximal	3.06255	3.29251	K562	KHSRP
chr1	12405376	12405410	+	intron-Proximal	7.12363	20.30992	K562	SF3B4
chr1	12405410	12405427	+	intron-Proximal	3.11881	3.28516	K562	SMNDC1
chr1	12428647	12428708	+	intron-Proximal	4.74759	4.13847	K562	AQR
chr1	12317159	12317190	+	intron-Proximal	5.78659	9.41643	K562	AQR
chr1	12567180	12567212	+	intron-Proximal	5.30533	8.52787	K562	AQR
chr1	12320670	12320721	+	intron-Proximal	4.62046	5.97467	K562	TIA1
chr1	12406733	12406794	+	intron-Proximal	3.42816	4.06013	K562	PRPF8
chr1	12378399	12378467	+	intron-Proximal	3.81706	3.84564	K562	EFTUD2
chr1	12338095	12338141	+	intron-Proximal	5.67673	9.95272	K562	AQR
chr1	12557686	12557732	+	intron-Proximal	4.66736	4.13847	K562	AQR
chr1	12395888	12395984	+	intron-Proximal	3.80843	5.28701	K562	PRPF8
chr1	12364510	12364547	+	intron-Proximal	3.28469	7.38503	K562	SF3B4
chr1	12567153	12567180	+	intron-Proximal	4.64932	6.80869	K562	AQR
chr1	12374408	12374471	+	intron-Proximal	3.86723	4.16558	K562	RBM22
chr1	12359453	12359500	+	intron-Proximal	4.26659	8.90657	K562	TIA1
chr1	12387636	12387687	+	intron-Proximal	5.15416	6.90654	K562	SF3B4
chr1	12406709	12406769	+	intron-Proximal	3.45984	6.21987	K562	AQR
chr1	12317927	12317986	+	intron-Proximal	3.32223	4.08064	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for VPS13D is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VPS13D is not available on ENCORE database.
104 RBPs can affect the levels of VPS13D.

The Knockdown/knockout RNA-Seq assay for VPS13D is not available on ENCORE database.

104 RBPs can affect the gene expression of VPS13D :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VPS13D	ENSG00000048707.9	1045.05640	756.95540	0.46520	4.05680	2.78290	HepG2	AATF
VPS13D	ENSG00000048707.9	1326.01480	991.51080	0.41930	2.67220	2.14950	HepG2	AKAP1
VPS13D	ENSG00000048707.9	602.57440	868.81380	-0.52790	2.76920	1.83140	HepG2	BCCIP
VPS13D	ENSG00000048707.9	1239.93230	949.83030	0.38440	2.60580	1.99710	HepG2	DDX3X
VPS13D	ENSG00000048707.9	1056.75850	815.83440	0.37320	2.15530	1.60330	HepG2	DDX6
VPS13D	ENSG00000048707.9	682.95760	860.00850	-0.33260	2.88940	2.17390	HepG2	DNAJC21
VPS13D	ENSG00000048707.9	1007.99660	784.37020	0.36180	2.18600	1.65160	HepG2	EIF2S1
VPS13D	ENSG00000048707.9	1248.61440	843.93200	0.56500	3.67220	2.88560	HepG2	EIF4B
VPS13D	ENSG00000048707.9	2000.71650	1686.44370	0.24640	2.81130	2.20670	HepG2	ETF1
VPS13D	ENSG00000048707.9	1131.70370	874.49970	0.37190	2.46240	1.80860	HepG2	FXR1
VPS13D	ENSG00000048707.9	1038.32890	811.29510	0.35590	2.14920	1.56060	HepG2	G3BP1
VPS13D	ENSG00000048707.9	460.95970	608.07840	-0.39960	2.21020	1.41580	HepG2	GEMIN5
VPS13D	ENSG00000048707.9	1225.98420	821.35010	0.57780	5.80510	4.82220	HepG2	HNRNPK
VPS13D	ENSG00000048707.9	1129.74880	959.39780	0.23570	2.13780	1.59680	HepG2	HNRNPU
VPS13D	ENSG00000048707.9	796.06720	979.98990	-0.29990	3.46770	2.65380	HepG2	ILF2
VPS13D	ENSG00000048707.9	1503.15710	900.46130	0.73920	8.07560	7.02000	HepG2	NCBP2
VPS13D	ENSG00000048707.9	649.91250	855.70290	-0.39690	3.85350	2.99680	HepG2	PPIL4
VPS13D	ENSG00000048707.9	1323.93200	1128.01330	0.23090	3.02610	2.41180	HepG2	PUM1
VPS13D	ENSG00000048707.9	782.54920	1083.92680	-0.47000	7.04810	6.14260	HepG2	PUS1
VPS13D	ENSG00000048707.9	1457.20160	932.66200	0.64370	10.16970	9.07830	HepG2	QKI
VPS13D	ENSG00000048707.9	580.66780	888.03390	-0.61290	4.70840	3.31620	HepG2	RCC2
VPS13D	ENSG00000048707.9	1291.88140	958.37200	0.43070	5.47190	4.75260	HepG2	NELFE
VPS13D	ENSG00000048707.9	1104.76700	892.57000	0.30760	2.97680	2.34010	HepG2	RECQL
VPS13D	ENSG00000048707.9	937.62250	1347.58220	-0.52330	3.44780	2.55450	HepG2	RPS3A
VPS13D	ENSG00000048707.9	1276.19090	896.57910	0.50920	7.49730	6.60200	HepG2	SF3B4
VPS13D	ENSG00000048707.9	1970.30720	1592.02020	0.30750	4.32350	3.73740	HepG2	SRFBP1
VPS13D	ENSG00000048707.9	1225.86890	935.82310	0.38940	4.71230	4.13700	HepG2	SRSF1
VPS13D	ENSG00000048707.9	1350.78550	1049.19260	0.36440	5.03760	4.23250	HepG2	SRSF5
VPS13D	ENSG00000048707.9	946.61050	1129.42020	-0.25470	2.51950	1.85250	HepG2	SRSF7
VPS13D	ENSG00000048707.9	1098.68240	761.33220	0.52910	8.35830	7.49170	HepG2	SRSF9
VPS13D	ENSG00000048707.9	1175.35010	1382.22900	-0.23390	2.39850	1.91380	HepG2	SSB
VPS13D	ENSG00000048707.9	1427.40020	1193.16540	0.25850	2.55910	1.95640	HepG2	SUCLG1
VPS13D	ENSG00000048707.9	1437.48760	841.12290	0.77310	15.18630	14.02870	HepG2	TAF15
VPS13D	ENSG00000048707.9	1080.23920	772.91070	0.48290	5.14480	4.01570	HepG2	TIA1
VPS13D	ENSG00000048707.9	701.44740	932.16410	-0.41020	3.81300	3.24630	HepG2	TIAL1
VPS13D	ENSG00000048707.9	631.44670	940.57220	-0.57490	8.68800	7.77570	HepG2	TRIM56
VPS13D	ENSG00000048707.9	265.03990	502.41230	-0.92270	7.34710	6.10270	HepG2	UCHL5
VPS13D	ENSG00000048707.9	463.49490	778.92100	-0.74890	4.30010	3.03410	HepG2	UPF2
VPS13D	ENSG00000048707.9	875.32780	1051.61550	-0.26470	2.37050	1.80660	HepG2	UTP3
VPS13D	ENSG00000048707.9	891.24140	1207.04070	-0.43760	2.42200	1.40630	HepG2	XPO5
VPS13D	ENSG00000048707.9	504.95430	837.12060	-0.72930	4.65990	3.72730	HepG2	XRN2
VPS13D	ENSG00000048707.9	6772.94480	7717.24690	-0.18830	2.56210	2.01140	K562	AGGF1
VPS13D	ENSG00000048707.9	6306.64970	8030.20490	-0.34860	3.66820	2.91230	K562	AKAP8L
VPS13D	ENSG00000048707.9	6821.69060	8425.73080	-0.30470	4.11200	2.97910	K562	ATP5C1
VPS13D	ENSG00000048707.9	3794.03140	3221.80260	0.23580	2.87820	1.89920	K562	BCLAF1
VPS13D	ENSG00000048707.9	7536.30890	9222.33950	-0.29130	3.45640	2.11950	K562	CCDC124
VPS13D	ENSG00000048707.9	4845.86830	3639.69030	0.41280	6.20190	3.94220	K562	CEBPZ
VPS13D	ENSG00000048707.9	3634.60670	4574.71600	-0.33190	3.18720	1.79890	K562	CIRBP
VPS13D	ENSG00000048707.9	6989.69460	4546.60200	0.62030	4.09140	2.75800	K562	CNOT7
VPS13D	ENSG00000048707.9	3367.96020	2395.95500	0.49120	5.56320	4.45830	K562	CPSF6
VPS13D	ENSG00000048707.9	11570.30380	7731.77430	0.58150	12.64820	10.64680	K562	CELF1
VPS13D	ENSG00000048707.9	5489.14290	4183.40410	0.39180	7.83850	5.77980	K562	DDX21
VPS13D	ENSG00000048707.9	3094.43640	3832.96130	-0.30880	3.29720	2.14940	K562	DDX3X
VPS13D	ENSG00000048707.9	4076.67340	4834.98000	-0.24610	3.83750	3.08790	K562	DDX47
VPS13D	ENSG00000048707.9	6254.17580	8640.70150	-0.46630	10.46380	8.53890	K562	DKC1
VPS13D	ENSG00000048707.9	3701.10530	3047.39480	0.28030	2.10420	1.30730	K562	EFTUD2
VPS13D	ENSG00000048707.9	2798.58720	3583.36960	-0.35660	5.81960	4.83470	K562	EIF2S2
VPS13D	ENSG00000048707.9	2310.10220	3262.43170	-0.49800	4.36950	3.03450	K562	EIF3D
VPS13D	ENSG00000048707.9	2127.09680	3196.16030	-0.58750	12.74370	11.00960	K562	EIF3G
VPS13D	ENSG00000048707.9	2385.87630	3128.47360	-0.39090	4.05300	3.01270	K562	FIP1L1
VPS13D	ENSG00000048707.9	2664.01550	2066.69090	0.36620	2.92740	1.98610	K562	FTO
VPS13D	ENSG00000048707.9	3139.21770	4164.50780	-0.40770	7.80990	6.86020	K562	FXR1
VPS13D	ENSG00000048707.9	4758.28340	3627.56520	0.39130	6.77220	5.03190	K562	GLRX3
VPS13D	ENSG00000048707.9	3189.23770	2287.41450	0.47940	6.08220	4.90650	K562	GPKOW
VPS13D	ENSG00000048707.9	3248.58100	4775.18740	-0.55570	9.19450	7.79510	K562	GRSF1
VPS13D	ENSG00000048707.9	6095.72260	3867.34690	0.65640	8.19120	6.42520	K562	HNRNPA1
VPS13D	ENSG00000048707.9	4557.86880	2884.36950	0.66000	12.96240	11.74610	K562	HNRNPC
VPS13D	ENSG00000048707.9	1919.46540	2573.17360	-0.42280	3.45890	2.40770	K562	HNRNPM
VPS13D	ENSG00000048707.9	5623.21540	4282.31620	0.39290	3.29350	2.32030	K562	HNRNPU
VPS13D	ENSG00000048707.9	2800.00930	4241.60280	-0.59920	8.64490	7.25650	K562	HSPD1
VPS13D	ENSG00000048707.9	6978.74240	8521.84530	-0.28820	2.71210	1.89620	K562	KIF1C
VPS13D	ENSG00000048707.9	2548.61620	1953.51510	0.38350	2.38710	1.52910	K562	KRR1
VPS13D	ENSG00000048707.9	3182.63660	4485.92530	-0.49520	7.22340	5.83810	K562	MAGOH
VPS13D	ENSG00000048707.9	6124.42960	8157.67250	-0.41360	4.96600	3.39070	K562	MAK16
VPS13D	ENSG00000048707.9	3740.17160	4476.81400	-0.25940	2.52870	1.65030	K562	MATR3
VPS13D	ENSG00000048707.9	6401.98610	9546.64840	-0.57650	10.77310	8.78040	K562	MBNL1
VPS13D	ENSG00000048707.9	2705.92560	2232.82790	0.27720	2.35770	1.55290	K562	METAP2
VPS13D	ENSG00000048707.9	4803.85190	3813.93220	0.33280	7.09810	5.85510	K562	MTPAP
VPS13D	ENSG00000048707.9	2388.22540	3003.66710	-0.33080	2.57770	1.34440	K562	NONO
VPS13D	ENSG00000048707.9	6129.11450	4237.50600	0.53240	27.95870	25.98850	K562	NSUN2
VPS13D	ENSG00000048707.9	6082.95710	4367.96690	0.47770	2.69200	1.47510	K562	PABPC1
VPS13D	ENSG00000048707.9	4830.60290	3991.34970	0.27520	2.58090	1.63700	K562	PCBP2
VPS13D	ENSG00000048707.9	5303.27910	4309.93050	0.29910	2.15540	1.42050	K562	PCBP3
VPS13D	ENSG00000048707.9	2656.62460	3551.37790	-0.41880	4.37830	3.31410	K562	PPIG
VPS13D	ENSG00000048707.9	1798.17420	2965.47630	-0.72170	11.10140	9.58590	K562	PRPF8
VPS13D	ENSG00000048707.9	2690.89420	4358.36270	-0.69570	14.60200	13.14010	K562	PTBP1
VPS13D	ENSG00000048707.9	5862.91220	6859.53740	-0.22650	2.30240	1.55840	K562	PUF60
VPS13D	ENSG00000048707.9	6166.50600	7148.77610	-0.21320	3.16650	2.14110	K562	PUM2
VPS13D	ENSG00000048707.9	6106.42440	7963.33380	-0.38300	4.11020	3.46770	K562	PUS1
VPS13D	ENSG00000048707.9	6079.27850	7759.42220	-0.35200	5.65620	4.83330	K562	RBM15
VPS13D	ENSG00000048707.9	3183.22270	4179.11060	-0.39270	4.20020	3.13910	K562	RBM22
VPS13D	ENSG00000048707.9	1798.39390	2359.70850	-0.39190	4.64340	3.35460	K562	RCC2
VPS13D	ENSG00000048707.9	3296.68070	4397.85450	-0.41580	4.14760	2.77650	K562	NELFE
VPS13D	ENSG00000048707.9	1680.61080	3020.37760	-0.84570	11.68140	9.97820	K562	RPS19
VPS13D	ENSG00000048707.9	3207.05080	5913.80870	-0.88280	16.38430	13.84890	K562	RPS3
VPS13D	ENSG00000048707.9	2433.80700	2945.58180	-0.27530	2.49300	1.46740	K562	SAFB
VPS13D	ENSG00000048707.9	6375.34130	4181.50840	0.60840	11.71080	10.13130	K562	SF3A3
VPS13D	ENSG00000048707.9	3502.48880	2175.89650	0.68670	8.20110	6.46530	K562	SF3B1
VPS13D	ENSG00000048707.9	5750.21480	4013.15240	0.51880	9.88050	8.21730	K562	SF3B4
VPS13D	ENSG00000048707.9	2466.52890	1883.03870	0.38930	3.59150	2.13400	K562	SLBP
VPS13D	ENSG00000048707.9	5269.91050	4284.06110	0.29870	7.12230	5.69610	K562	SRPK2
VPS13D	ENSG00000048707.9	5244.74000	3733.33930	0.49030	7.20520	5.30460	K562	SRSF7
VPS13D	ENSG00000048707.9	4711.17200	3296.85470	0.51490	6.40680	4.33550	K562	SSB
VPS13D	ENSG00000048707.9	4706.14390	3754.42290	0.32590	2.56000	1.36080	K562	STAU1
VPS13D	ENSG00000048707.9	8308.50990	5199.18040	0.67620	3.03710	1.52180	K562	SUPT6H
VPS13D	ENSG00000048707.9	2235.31560	3315.86360	-0.56890	10.31190	8.72210	K562	SYNCRIP
VPS13D	ENSG00000048707.9	3240.09460	4324.19000	-0.41640	4.26480	3.38050	K562	TARDBP
VPS13D	ENSG00000048707.9	4983.20770	3741.18610	0.41350	3.46910	2.21570	K562	U2AF1
VPS13D	ENSG00000048707.9	5052.38910	3863.59790	0.38690	5.65090	4.50270	K562	U2AF2
VPS13D	ENSG00000048707.9	9569.03710	7734.99000	0.30690	3.08510	1.59890	K562	UBE2L3
VPS13D	ENSG00000048707.9	5128.30640	4493.12660	0.19070	2.79340	2.07140	K562	UPF1
VPS13D	ENSG00000048707.9	5536.50880	3844.61170	0.52600	8.80970	7.21140	K562	WDR3
VPS13D	ENSG00000048707.9	7786.51060	5299.45220	0.55500	8.94780	7.27140	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VPS13D is not available on ENCORE database.

16 RBPs can affect the splicing of VPS13D :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	VPS13D	ENSG00000048707.9	chr1	+	12418514	12418657			12416454	12416581	12422775	12422906	-0.22400	0.00178	0.05705	excluded	K562	PRPF8
SE	VPS13D	ENSG00000048707.9	chr1	+	12557079	12557262			12520255	12520451	12557553	12557685	0.09900	0.00000	0.00007	included	K562	AKAP8L
SE	VPS13D	ENSG00000048707.9	chr1	+	12409220	12409431			12408879	12409030	12414197	12414278	-0.10800	0.00618	0.07305	excluded	K562	PUS1
SE	VPS13D	ENSG00000048707.9	chr1	+	12398287	12398362			12395761	12395884	12401836	12401942	-0.78700	0.00025	0.00726	excluded	K562	U2AF1
SE	VPS13D	ENSG00000048707.9	chr1	+	12409220	12409431			12408879	12409030	12414197	12414278	-0.13300	0.00122	0.03978	excluded	K562	UTP18
SE	VPS13D	ENSG00000048707.9	chr1	+	12475139	12475274			12469890	12469947	12476712	12476880	-0.08900	0.00227	0.05056	excluded	K562	RBM15
SE	VPS13D	ENSG00000048707.9	chr1	+	12402955	12403108			12395761	12395884	12405430	12405566	-0.06400	0.00015	0.00608	excluded	K562	RBM15
A3SS	VPS13D	ENSG00000048707.9	chr1	+	12395729	12395884			12395761	12395884	12393282	12393423	0.12500	0.00001	0.00008	longer	K562	AQR
RI	VPS13D	ENSG00000048707.9	chr1	+	12408879	12409431			12408879	12409030	12409220	12409431	0.19800	0.00011	0.02279	included	K562	DDX55
RI	VPS13D	ENSG00000048707.9	chr1	+	12408879	12409431			12408879	12409030	12409220	12409431	0.22500	0.00000	0.00003	included	K562	PUS1
RI	VPS13D	ENSG00000048707.9	chr1	+	12408879	12409431			12408879	12409030	12409220	12409431	-0.10500	0.00007	0.01061	excluded	K562	HNRNPU
RI	VPS13D	ENSG00000048707.9	chr1	+	12408879	12409431			12408879	12409030	12409220	12409431	-0.13600	0.00085	0.04304	excluded	K562	NCBP2
RI	VPS13D	ENSG00000048707.9	chr1	+	12408879	12409431			12408879	12409030	12409220	12409431	0.09300	0.00751	0.07188	included	K562	AGGF1
RI	VPS13D	ENSG00000048707.9	chr1	+	12408879	12409431			12408879	12409030	12409220	12409431	0.21000	0.00933	0.07333	included	HepG2	TAF15
RI	VPS13D	ENSG00000048707.9	chr1	+	12408879	12409431			12408879	12409030	12409220	12409431	-0.17100	0.00016	0.00337	excluded	K562	U2AF2
RI	VPS13D	ENSG00000048707.9	chr1	+	12408879	12409431			12408879	12409030	12409220	12409431	-0.21600	0.00000	0.00000	excluded	K562	FXR1
MXE	VPS13D	ENSG00000048707.9	chr1	+	12401836	12401942	12402955	12403108	12395761	12395884	12405430	12405566	0.11400	0.00063	0.01383	1included	K562	U2AF1
MXE	VPS13D	ENSG00000048707.9	chr1	+	12395761	12395884	12401839	12401942	12393282	12393423	12402955	12403108	0.18200	0.00887	0.09252	1included	K562	U2AF1
MXE	VPS13D	ENSG00000048707.9	chr1	+	12475139	12475274	12476712	12476880	12469923	12469947	12516053	12516186	0.14200	0.00105	0.01991	1included	K562	SRSF1
MXE	VPS13D	ENSG00000048707.9	chr1	+	12516053	12516186	12520255	12520451	12476712	12476880	12557553	12557685	-0.18100	0.00040	0.00956	2included	K562	SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VPS13D

General Information

Functions

Localization

Domains (AlphaFold: VPS13D)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VPS13D is not avaliable on ENCORE database.

43 proteins are bound to VPS13D RNA:

eCLIP assay for VPS13D is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VPS13D is not available on ENCORE database.

104 RBPs can affect the gene expression of VPS13D :

The Knockdown/knockout RNA-Seq assay for VPS13D is not available on ENCORE database.

16 RBPs can affect the splicing of VPS13D :

The Knockdown/knockout RNA-Seq assay for VPS13D is not avaliable on ENCORE database.