SEC24C

General Information

Gene Name : SEC24C
Gene ID : ENSG00000176986.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SEC24C)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SEC24C	ENSG00000176986.15	42.76	55.44	49.10	ENCSR000AEF
HepG2	SEC24C	ENSG00000176986.15	36.51	35.42	35.97	ENCSR985KAT
K562	SEC24C	ENSG00000176986.15	79.55	72.47	76.01	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SEC24C is not avaliable on ENCORE database.

Proteins bound to RNA

SEC24C RNA is bound by 34 proteins.

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eCLIP assay for SEC24C is not avaliable on ENCORE database.

34 proteins are bound to SEC24C RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	75531579	75531730	+	3'-UTR	4.16085	65.97078	K562	UPF1
chr10	75531333	75531376	+	3'-UTR	5.97749	58.85299	K562	UPF1
chr10	75531287	75531333	+	3'-UTR	6.86449	56.61127	K562	UPF1
chr10	75531376	75531466	+	3'-UTR	4.91984	47.36167	K562	UPF1
chr10	75519801	75519907	+	CDS,intron-Distal	4.89723	35.66607	K562	PCBP1
chr10	75531730	75531790	+	3'-UTR	4.73989	33.40084	K562	UPF1
chr10	75531170	75531223	+	3'-UTR	4.68955	31.97885	K562	UPF1
chr10	75531018	75531117	+	3'-UTR	3.92747	29.83313	K562	UPF1
chr10	75531800	75531845	+	3'-UTR	6.04850	29.76820	K562	UPF1
chr10	75531232	75531287	+	3'-UTR	5.05606	29.14852	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 132 entries

eCLIP assay for SEC24C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SEC24C is not available on ENCORE database.
85 RBPs can affect the levels of SEC24C.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SEC24C is not available on ENCORE database.

85 RBPs can affect the gene expression of SEC24C :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SEC24C	ENSG00000176986.10	1519.18920	3796.11760	-1.32120	60.95720	59.15780	HepG2	RBM22
SEC24C	ENSG00000176986.10	2405.44680	5521.17330	-1.19870	32.97320	29.89050	K562	RBM22
SEC24C	ENSG00000176986.10	1455.08390	3159.08920	-1.11840	30.32810	28.67510	HepG2	CELF1
SEC24C	ENSG00000176986.10	4411.19780	2768.66070	0.67190	26.22340	24.68440	HepG2	PUS1
SEC24C	ENSG00000176986.10	4596.81690	3081.22980	0.57700	24.62220	23.39820	HepG2	ZNF622
SEC24C	ENSG00000176986.10	5090.12980	3523.58230	0.53060	17.15460	16.19030	HepG2	SRSF1
SEC24C	ENSG00000176986.10	3839.67000	2717.36200	0.49870	16.24290	14.91580	HepG2	CKAP4
SEC24C	ENSG00000176986.10	8093.15450	12592.54890	-0.63780	16.66130	14.45090	K562	CELF1
SEC24C	ENSG00000176986.10	9293.03310	6622.73320	0.48860	12.66360	11.02160	K562	SF3A3
SEC24C	ENSG00000176986.10	1172.77230	2097.55950	-0.83880	12.86340	10.94280	HepG2	ADAR
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 94 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SEC24C is not available on ENCORE database.

41 RBPs can affect the splicing of SEC24C :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SEC24C	ENSG00000176986.10	chr10	+	75506387	75506474	75504148	75504195	75506562	75506762	0.09700	0.00000	included	K562	PRPF8
SE	SEC24C	ENSG00000176986.10	chr10	+	75521855	75521924	75520470	75520607	75523247	75523359	0.35800	0.00000	included	HepG2	U2AF1
SE	SEC24C	ENSG00000176986.10	chr10	+	75525557	75525673	75525208	75525347	75525843	75525968	-0.06400	0.00000	excluded	K562	AQR
SE	SEC24C	ENSG00000176986.10	chr10	+	75510865	75511001	75506562	75506762	75519379	75519552	-0.09200	0.00001	excluded	K562	AQR
SE	SEC24C	ENSG00000176986.10	chr10	+	75506387	75506474	75504119	75504195	75506562	75506762	0.07500	0.00015	included	K562	EFTUD2
SE	SEC24C	ENSG00000176986.10	chr10	+	75521855	75521924	75520470	75520607	75523247	75523359	0.16100	0.00000	included	HepG2	MATR3
SE	SEC24C	ENSG00000176986.10	chr10	+	75521855	75521924	75520470	75520607	75523247	75523359	0.23600	0.00000	included	K562	U2AF1
SE	SEC24C	ENSG00000176986.10	chr10	+	75521855	75521924	75520470	75520607	75523247	75523359	0.12600	0.00128	included	K562	HNRNPM
SE	SEC24C	ENSG00000176986.10	chr10	+	75506387	75506474	75504119	75504195	75506562	75506762	0.15500	0.00001	included	K562	RBM22
SE	SEC24C	ENSG00000176986.10	chr10	+	75506387	75506474	75504119	75504195	75506562	75506762	0.09900	0.00010	included	K562	TARDBP

Showing 1 to 10 of 80 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SEC24C

General Information

Functions

Localization

Domains (AlphaFold: SEC24C)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SEC24C is not avaliable on ENCORE database.

34 proteins are bound to SEC24C RNA:

eCLIP assay for SEC24C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SEC24C is not available on ENCORE database.

85 RBPs can affect the gene expression of SEC24C :

The Knockdown/knockout RNA-Seq assay for SEC24C is not available on ENCORE database.

41 RBPs can affect the splicing of SEC24C :

The Knockdown/knockout RNA-Seq assay for SEC24C is not avaliable on ENCORE database.