TARDBP      eCLIP in K562

Experiment Information (Status: Released)
340340-control
Exp_UID340340
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR584TCRENCSR924OLO
ENCODE_aliasgene-yeo:340gene-yeo:340-control
RBPTARDBPTARDBP
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB057RGGENCAB057RGG
AntibodyA303-223AA303-223A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID114138




Replicate Information
Rep_UID340_01340_02340_INPUT
Exp UID340340340
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB754PZDENCLB844WUKENCLB615MWL
ENCODE_aliasgene-yeo:340_01gene-yeo:340_02gene-yeo:340_INPUT
Biosample NameK562_040915K562_022715K562_040915
Biosample_ENCODE_AccessionENCBS931MQOENCBS253VOZENCBS931MQO
Biosample_ENCODE_Aliasgene-yeo:K562_040915gene-yeo:K562_022715gene-yeo:K562_040915
Cell_LineK562K562K562
Culture_Start_Date2015-04-092015-02-272015-04-09
Culture_End_Date2015-05-082015-03-232015-05-08
Passage555




QC Stats
Experiment QC
340340-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID340_01340_02340_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID340_01340_02340_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode506506506
i7_barcode702702701




Sequencing Information
Rep_UID340_01340_02340_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/340.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz340final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
340.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz340final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=340)