CYTH3

General Information

Gene Name       : CYTH3
Gene ID             : ENSG00000008256.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CYTH3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CYTH3ENSG00000008256.157.7311.319.52ENCSR000AEF
HepG2CYTH3ENSG00000008256.156.033.354.69ENCSR985KAT
K562CYTH3ENSG00000008256.158.889.309.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CYTH3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CYTH3 RNA is bound by 17 proteins.  







eCLIP assay for CYTH3 is not avaliable on ENCORE database.





17 proteins are bound to CYTH3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr762019546201992-3'-UTR,intron-Distal3.949055.81489K562UPF1
chr762037336203789-3'-UTR,intron-Distal5.514678.40676K562UPF1
chr762033136203422-3'-UTR,intron-Distal4.9558928.15767K562UPF1
chr762015546201621-3'-UTR,intron-Distal5.9590156.43591K562PUM2
chr762032136203313-3'-UTR,intron-Distal5.4826117.33080K562UPF1
chr762014446201494-3'-UTR,intron-Distal5.3438313.22966K562PUM2
chr762028466202910-3'-UTR,intron-Distal5.6651011.61633K562UPF1
chr762029906203031-3'-UTR,intron-Distal3.456377.55751K562UPF1
chr762043576204439-3'-UTR,intron-Distal,intron-Proximal5.576888.76530K562UPF1
chr762022996202364-3'-UTR,intron-Distal4.7051911.27586K562UPF1
chr762018066201902-3'-UTR,intron-Distal4.7325713.96735K562UPF1
chr762029466202990-3'-UTR,intron-Distal4.263557.12652K562UPF1
chr762036526203677-3'-UTR,intron-Distal4.906955.63383K562UPF1
chr762014986201554-3'-UTR,intron-Distal5.7708243.78091K562PUM2
chr762027746202809-3'-UTR,intron-Distal3.878665.48330K562UPF1
chr762015156201591-3'-UTR,intron-Distal4.668913.88917K562DDX6
chr762272796227339-CDS,intron-Distal,intron-Proximal3.009633.55138K562ZNF622
chr762148576214874-intron-Distal7.94659400.00000K562TROVE2
chr763118076311896-intron-Distal4.310005.01722K562CSTF2T
chr762794456279579-intron-Distal3.386404.08064K562KHSRP
chr762148406214881-intron-Distal4.133333.88460HepG2PCBP2
chr763119616312048-intron-Distal4.491414.06667K562GTF2F1
chr762191956219322-intron-Distal5.268406.10540K562EIF4G2
chr762148406214845-intron-Distal3.6706532.38546K562TIA1
chr763119526312037-intron-Distal3.296943.41957K562DROSHA
chr762148406214879-intron-Distal6.1193028.98728HepG2TROVE2
chr762148486214860-intron-Distal3.5281132.70664K562TIA1
chr762119366212014-intron-Distal4.736374.59504K562RBFOX2
chr762523376252374-intron-Distal3.541253.04630K562TROVE2
chr763115236311689-intron-Distal3.388335.88734K562EWSR1
chr763119546312040-intron-Distal4.396373.13028HepG2FAM120A
chr763119576312032-intron-Distal4.261574.48935K562CSTF2T
chr762194616219523-intron-Distal4.760734.67055K562EIF4G2
chr762148416214886-intron-Distal3.874367.65762K562YBX3
chr762148416214880-intron-Distal3.784065.16954K562PCBP1
chr762055536205639-intron-Distal4.564046.35323K562RBFOX2
chr762148436214857-intron-Distal7.94560400.00000K562TROVE2
chr762148606214871-intron-Distal3.4456532.21888K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CYTH3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CYTH3 is not available on ENCORE database.

  • 71 RBPs can affect the levels of CYTH3.  








The Knockdown/knockout RNA-Seq assay for CYTH3 is not available on ENCORE database.





71 RBPs can affect the gene expression of CYTH3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CYTH3ENSG00000008256.11378.65330172.039701.1380013.9800012.83740HepG2ACO1
CYTH3ENSG00000008256.11303.97740173.121300.812104.100803.47060HepG2AKAP1
CYTH3ENSG00000008256.11189.49070309.40720-0.707405.100904.21450HepG2AUH
CYTH3ENSG00000008256.11102.71460172.00120-0.743802.745201.84900HepG2BCLAF1
CYTH3ENSG00000008256.11100.28860185.27210-0.885504.695803.37230HepG2YBX3
CYTH3ENSG00000008256.11361.62910231.373000.644204.804504.00100HepG2CELF1
CYTH3ENSG00000008256.11248.39970165.851200.582702.452401.86020HepG2DDX3X
CYTH3ENSG00000008256.11107.23680175.47530-0.710503.052902.02780HepG2DHX30
CYTH3ENSG00000008256.11151.74750235.12320-0.631703.038102.18600HepG2EIF4G2
CYTH3ENSG00000008256.11455.85460355.219900.359802.452401.88050HepG2ETF1
CYTH3ENSG00000008256.11107.81230314.09380-1.542705.682704.23110HepG2FTO
CYTH3ENSG00000008256.11292.47230152.681100.937705.871204.88850HepG2FXR1
CYTH3ENSG00000008256.1170.24740183.68270-1.386707.834706.83080HepG2HNRNPA1
CYTH3ENSG00000008256.11233.30720330.33350-0.501703.155302.39250HepG2HNRNPF
CYTH3ENSG00000008256.11114.01810339.29270-1.573305.788004.91140HepG2HNRNPLL
CYTH3ENSG00000008256.11299.15450194.811200.618702.786201.55150HepG2HSPD1
CYTH3ENSG00000008256.11204.03140325.28470-0.672904.444503.54530HepG2IGF2BP1
CYTH3ENSG00000008256.11213.02470144.002900.564802.247901.63180HepG2IGF2BP2
CYTH3ENSG00000008256.11294.96630194.652600.599502.556201.36480HepG2KRR1
CYTH3ENSG00000008256.11207.38500345.91860-0.738102.264601.39310HepG2MTPAP
CYTH3ENSG00000008256.11251.87940157.221400.679803.122502.45230HepG2NCBP2
CYTH3ENSG00000008256.11136.79130246.71930-0.850905.746304.65360HepG2NOL12
CYTH3ENSG00000008256.11167.15980300.80940-0.847602.515201.80090HepG2NSUN2
CYTH3ENSG00000008256.11207.34450134.426700.625103.168002.52650HepG2PCBP1
CYTH3ENSG00000008256.11296.55290136.787501.116309.998609.08510HepG2PTBP1
CYTH3ENSG00000008256.11402.10160249.992100.685606.484105.65570HepG2PUM1
CYTH3ENSG00000008256.11470.87600249.815200.914409.225808.03680HepG2PUM2
CYTH3ENSG00000008256.11268.61620153.316500.808903.053102.31470HepG2RAVER1
CYTH3ENSG00000008256.11417.86620296.902500.493003.413002.85470HepG2RBM22
CYTH3ENSG00000008256.11215.94130134.446600.683503.300102.56920HepG2RBM25
CYTH3ENSG00000008256.11320.22490152.228601.072709.145208.26520HepG2NELFE
CYTH3ENSG00000008256.11265.33830141.785300.904006.352805.47330HepG2RECQL
CYTH3ENSG00000008256.11264.75460138.279600.937006.235505.35410HepG2RPS19
CYTH3ENSG00000008256.11262.23670164.273200.674702.866702.05330HepG2RPS2
CYTH3ENSG00000008256.11286.17290167.704400.770903.724902.46760HepG2RPS5
CYTH3ENSG00000008256.11261.15010148.502500.814303.807002.90310HepG2RRP9
CYTH3ENSG00000008256.11124.39810180.74500-0.539002.320401.72220HepG2SAFB2
CYTH3ENSG00000008256.11251.46270142.407400.820205.124104.36120HepG2SF3B4
CYTH3ENSG00000008256.11152.13790225.79570-0.569603.041402.31000HepG2SLBP
CYTH3ENSG00000008256.11292.48280210.787200.472502.838802.18800HepG2SMN1
CYTH3ENSG00000008256.11797.76450335.348101.2502028.2801027.11580HepG2SRFBP1
CYTH3ENSG00000008256.11233.84200148.645000.653603.264702.76190HepG2SRSF1
CYTH3ENSG00000008256.11237.31860324.54000-0.451602.721502.03080HepG2SRSF7
CYTH3ENSG00000008256.11176.42110120.932700.544702.375701.85700HepG2SRSF9
CYTH3ENSG00000008256.11188.78300291.17510-0.625204.084903.48780HepG2SSB
CYTH3ENSG00000008256.11386.86980264.446500.548802.944702.30740HepG2SUCLG1
CYTH3ENSG00000008256.11190.00560330.56480-0.798902.432301.74650HepG2TARDBP
CYTH3ENSG00000008256.11178.74860122.766500.541902.187901.44250HepG2TIA1
CYTH3ENSG00000008256.11448.09750231.879000.950302.458001.53470HepG2U2AF2
CYTH3ENSG00000008256.11107.20340177.40070-0.726702.292001.38410HepG2UPF2
CYTH3ENSG00000008256.11282.38470197.169000.518102.658702.07170HepG2UTP3
CYTH3ENSG00000008256.11129.07300190.72740-0.563301.933401.31950HepG2XRN2
CYTH3ENSG00000008256.11135.25450224.60570-0.731704.654203.99190HepG2ZNF622
CYTH3ENSG00000008256.111375.772701071.764500.360204.730404.02240K562AGGF1
CYTH3ENSG00000008256.111301.588201026.693200.342202.632402.05640K562AQR
CYTH3ENSG00000008256.11961.56990747.596300.363002.980002.16630K562CPSF6
CYTH3ENSG00000008256.11961.35970654.129600.555406.201504.56840K562DDX3X
CYTH3ENSG00000008256.11934.846501239.48700-0.406905.145904.29540K562DDX47
CYTH3ENSG00000008256.11540.94470783.84390-0.535106.146605.13800K562EIF2S2
CYTH3ENSG00000008256.11727.12630506.659600.521103.001301.92030K562EIF3D
CYTH3ENSG00000008256.11932.10440683.416000.447603.836902.87430K562EIF4A3
CYTH3ENSG00000008256.11438.04040615.46460-0.490604.489202.95700K562EIF4B
CYTH3ENSG00000008256.11528.55320682.47290-0.368702.373401.58820K562FIP1L1
CYTH3ENSG00000008256.11673.58660474.595200.505103.136101.60720K562GEMIN5
CYTH3ENSG00000008256.111463.448401183.499900.306202.400901.64070K562KIF1C
CYTH3ENSG00000008256.111072.62890725.092800.564806.261204.97630K562MAGOH
CYTH3ENSG00000008256.11505.55820723.63030-0.517404.755003.51110K562MATR3
CYTH3ENSG00000008256.111859.511001325.824200.487906.318204.83780K562MBNL1
CYTH3ENSG00000008256.111112.567301483.28700-0.414903.681001.94740K562NOL12
CYTH3ENSG00000008256.111113.68860647.229200.782903.088101.79510K562SF1
CYTH3ENSG00000008256.11672.70050520.187000.370802.722001.87390K562SF3B4
CYTH3ENSG00000008256.111203.81040743.480700.695102.704201.49320K562SNRNP200
CYTH3ENSG00000008256.111295.893601071.321600.274503.074702.09270K562SRPK2
CYTH3ENSG00000008256.11973.39040763.011200.351203.516002.18530K562SRSF7
CYTH3ENSG00000008256.11841.37260674.216500.319402.258901.52650K562TIA1
CYTH3ENSG00000008256.111380.568701123.722000.296903.352202.56590K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CYTH3 is not available on ENCORE database.





3 RBPs can affect the splicing of CYTH3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECYTH3ENSG00000008256.11chr7-621046062106096210165621027762108326210945-0.339000.000070.00152excludedHepG2U2AF2
SECYTH3ENSG00000008256.11chr7-6212361621253462107566210945621328362134290.108000.005180.04783includedK562AQR
SECYTH3ENSG00000008256.11chr7-622668062267476217453621757262272876227352-0.141000.002100.03128excludedK562PUS1
SECYTH3ENSG00000008256.11chr7-6212361621253462108326210945621328362133640.246000.000370.00877includedK562U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CYTH3 is not avaliable on ENCORE database.