AP001429.1

General Information

Gene Name       : AP001429.1
Gene ID             : ENSG00000270116.1
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AP001429.1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878AP001429.1ENSG00000270116.10.001.430.71ENCSR000AEF
HepG2AP001429.1ENSG00000270116.10.610.930.77ENCSR985KAT
K562AP001429.1ENSG00000270116.10.891.020.96ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AP001429.1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AP001429.1 RNA is bound by 1 proteins.  







eCLIP assay for AP001429.1 is not avaliable on ENCORE database.





1 proteins are bound to AP001429.1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr213847361638473724+intron-Distal,polyA_site5.8169414.82580K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AP001429.1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AP001429.1 is not available on ENCORE database.

  • 3 RBPs can affect the levels of AP001429.1.  








The Knockdown/knockout RNA-Seq assay for AP001429.1 is not available on ENCORE database.





3 RBPs can affect the gene expression of AP001429.1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AP001429.1ENSG00000270116.111.060400.562004.298702.243201.46290K562BOP1
AP001429.1ENSG00000270116.19.991100.516204.274602.251101.43140K562FTO
AP001429.1ENSG00000270116.15.2573018.15080-1.787602.106301.36830K562MAGOH
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AP001429.1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of AP001429.1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for AP001429.1 is not avaliable on ENCORE database.