TAF3

General Information

Gene Name       : TAF3
Gene ID             : ENSG00000165632.7
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TAF3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TAF3ENSG00000165632.76.155.615.88ENCSR000AEF
HepG2TAF3ENSG00000165632.73.514.854.18ENCSR985KAT
K562TAF3ENSG00000165632.76.266.686.47ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TAF3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TAF3 RNA is bound by 11 proteins.  







eCLIP assay for TAF3 is not avaliable on ENCORE database.





11 proteins are bound to TAF3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1080574458057489+3'-UTR4.703787.80881K562PUM2
chr1080573818057445+3'-UTR4.855317.56405K562PUM2
chr1080075628007690+CDS5.110166.76244K562ZNF800
chr1080059688006071+CDS3.428106.02988K562UCHL5
chr1080076568007702+CDS4.021033.32022K562UCHL5
chr1080192038019276+CDS,intron-Proximal3.108054.09989K562UCHL5
chr1080073938007462+CDS5.028927.69727K562UCHL5
chr1078664927866525+CDS,intron-Proximal4.120823.36385K562UCHL5
chr1080059768006042+CDS3.510433.02345K562ZNF622
chr1080059268006072+CDS5.359829.32793HepG2BCLAF1
chr1079007797900881+intron-Distal4.560136.23114K562TARDBP
chr1078774527877528+intron-Distal4.742796.88667HepG2SUGP2
chr1079322477932276+intron-Distal3.861873.04224HepG2SUGP2
chr1078787307878787+intron-Distal4.040863.41738HepG2PTBP1
chr1079622957962411+intron-Distal4.436974.92524K562TARDBP
chr1079320167932074+intron-Distal3.272244.14346HepG2SUGP2
chr1078680137868145+intron-Distal3.145154.73383HepG2HNRNPM
chr1078681847868233+intron-Distal3.952553.05187HepG2QKI
chr1079408037940877+intron-Distal3.881213.16028HepG2SUGP2
chr1078913907891502+intron-Distal4.080363.71397K562KHSRP
chr1079283357928394+intron-Distal4.524603.42734K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TAF3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TAF3 is not available on ENCORE database.

  • 49 RBPs can affect the levels of TAF3.  








The Knockdown/knockout RNA-Seq assay for TAF3 is not available on ENCORE database.





49 RBPs can affect the gene expression of TAF3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TAF3ENSG00000165632.7174.60630266.15390-0.608202.786202.17640HepG2ACO1
TAF3ENSG00000165632.7559.03760316.806900.819205.823905.08500HepG2AKAP1
TAF3ENSG00000165632.7455.36710753.13100-0.725905.256403.89190HepG2CCAR1
TAF3ENSG00000165632.7159.90290253.01350-0.662002.471201.75280HepG2CNOT7
TAF3ENSG00000165632.7450.77270603.17680-0.420202.372401.72880HepG2CPSF6
TAF3ENSG00000165632.7172.94100265.52590-0.618603.500402.35340HepG2YBX3
TAF3ENSG00000165632.7185.91320292.58160-0.654204.165503.40740HepG2CELF1
TAF3ENSG00000165632.7166.12440258.42230-0.637504.361403.57630HepG2DNAJC2
TAF3ENSG00000165632.7147.10910250.62170-0.768603.752303.06870HepG2EIF2S1
TAF3ENSG00000165632.7393.90030276.980500.507902.442401.83990HepG2EIF4A3
TAF3ENSG00000165632.7171.26710259.22470-0.598002.680002.02490HepG2G3BP1
TAF3ENSG00000165632.7429.06390683.78320-0.672304.986004.14290HepG2GPKOW
TAF3ENSG00000165632.7401.35720652.54370-0.701205.708504.83790HepG2HNRNPLL
TAF3ENSG00000165632.7214.79550297.09960-0.468002.110801.46120HepG2ILF2
TAF3ENSG00000165632.7394.20360279.516700.495902.472301.85180HepG2MAGOH
TAF3ENSG00000165632.7615.12860281.088001.129805.607004.73400HepG2MATR3
TAF3ENSG00000165632.7364.68710578.57920-0.665904.883003.89950HepG2NSUN2
TAF3ENSG00000165632.7171.69920297.77150-0.794305.016604.24290HepG2PUF60
TAF3ENSG00000165632.7477.96900298.284700.680103.009902.27730HepG2RAVER1
TAF3ENSG00000165632.7375.60740279.450600.426502.360501.85360HepG2NELFE
TAF3ENSG00000165632.71028.04840525.612600.967709.762308.61070HepG2RPLP0
TAF3ENSG00000165632.7376.65120246.807700.609703.966603.24340HepG2RPS19
TAF3ENSG00000165632.7289.21170205.878000.490202.223601.50220HepG2RPS2
TAF3ENSG00000165632.7379.64190645.90980-0.766707.139906.05260HepG2SF3B1
TAF3ENSG00000165632.7562.01600451.550800.315602.292601.82260HepG2SRFBP1
TAF3ENSG00000165632.7448.47570272.876500.716706.432605.78470HepG2SRSF1
TAF3ENSG00000165632.7414.95200294.015900.497003.797803.08580HepG2SRSF5
TAF3ENSG00000165632.7420.47500334.368600.330502.168201.60510HepG2SUCLG1
TAF3ENSG00000165632.7429.49940635.93440-0.566204.286603.41040HepG2TARDBP
TAF3ENSG00000165632.7389.31910282.628200.461902.849002.34280HepG2TIAL1
TAF3ENSG00000165632.7717.56850468.050400.616405.138304.29690HepG2U2AF1
TAF3ENSG00000165632.7265.78210401.89680-0.596604.511803.77800HepG2UTP3
TAF3ENSG00000165632.7316.57300457.82280-0.532304.957304.27880HepG2ZNF622
TAF3ENSG00000165632.71740.56770550.450201.6608023.6237022.09560K562AQR
TAF3ENSG00000165632.7759.051901106.59400-0.543902.468601.47500K562CNOT7
TAF3ENSG00000165632.71201.83120916.131600.391504.941104.10600K562DDX47
TAF3ENSG00000165632.7429.69640297.009800.532702.602801.36370K562EEF2
TAF3ENSG00000165632.7493.39000261.381000.916505.327203.89070K562EIF3A
TAF3ENSG00000165632.7442.79920307.264600.527102.821401.77520K562EIF3D
TAF3ENSG00000165632.7478.16970350.876400.446502.608701.81210K562EIF4A3
TAF3ENSG00000165632.71016.69190804.338000.337903.512902.45590K562EIF4G2
TAF3ENSG00000165632.7540.04520364.901700.565503.918503.21670K562FXR1
TAF3ENSG00000165632.7570.93810767.40540-0.426703.166902.36080K562GRSF1
TAF3ENSG00000165632.7647.65490889.12520-0.457203.695802.67410K562METAP2
TAF3ENSG00000165632.7787.60870589.444600.418002.209701.44200K562NAA15
TAF3ENSG00000165632.7693.01890558.787700.310502.056401.36630K562POLR2G
TAF3ENSG00000165632.7381.61930279.257000.450402.152401.48730K562PRPF8
TAF3ENSG00000165632.71298.58930877.620600.565205.937204.74720K562PUF60
TAF3ENSG00000165632.7884.58720683.517800.371903.449802.79940K562RBM15
TAF3ENSG00000165632.7469.40150350.656100.420702.523501.72360K562RBM22
TAF3ENSG00000165632.7807.55810560.475900.526803.182602.30270K562SYNCRIP
TAF3ENSG00000165632.7805.18090655.009200.297702.660701.82950K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TAF3 is not available on ENCORE database.





1 RBPs can affect the splicing of TAF3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETAF3ENSG00000165632.7chr10+8054381805456480510408051293805569380558000.331000.001050.01274includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TAF3 is not avaliable on ENCORE database.