NEDD1

General Information

Gene Name       : NEDD1
Gene ID             : ENSG00000139350.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: NEDD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NEDD1ENSG00000139350.1121.6720.4321.05ENCSR000AEF
HepG2NEDD1ENSG00000139350.118.8014.4711.64ENCSR985KAT
K562NEDD1ENSG00000139350.1110.8011.7911.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NEDD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NEDD1 RNA is bound by 4 proteins.  







eCLIP assay for NEDD1 is not avaliable on ENCORE database.





4 proteins are bound to NEDD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr129731384697313897+3'-UTR,CDS4.256504.78556K562LIN28B
chr129731371497313790+CDS,intron-Proximal3.615754.13013K562SF3B4
chr129731759397317668+intron-Distal4.354414.13641K562TARDBP
chr129731734397317434+intron-Distal4.148104.58794K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NEDD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NEDD1 is not available on ENCORE database.

  • 90 RBPs can affect the levels of NEDD1.  








The Knockdown/knockout RNA-Seq assay for NEDD1 is not available on ENCORE database.





90 RBPs can affect the gene expression of NEDD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NEDD1ENSG00000139350.7356.19800481.27680-0.434201.990001.45830HepG2ACO1
NEDD1ENSG00000139350.7386.90470483.47860-0.321502.083901.40480HepG2AKAP8L
NEDD1ENSG00000139350.7324.30300578.79920-0.835707.233805.99350HepG2ASCC1
NEDD1ENSG00000139350.7565.23010723.19720-0.355602.938402.23440HepG2AUH
NEDD1ENSG00000139350.7274.93810479.10290-0.801205.159803.87620HepG2BCCIP
NEDD1ENSG00000139350.7286.81260416.31350-0.537602.703601.81390HepG2BCLAF1
NEDD1ENSG00000139350.7675.361601016.31120-0.589603.578402.90710HepG2BOP1
NEDD1ENSG00000139350.7298.93350549.89820-0.879307.736206.49400HepG2CIRBP
NEDD1ENSG00000139350.7340.94310481.10090-0.496804.507203.69740HepG2CKAP4
NEDD1ENSG00000139350.7515.35900933.06000-0.856407.197406.13100HepG2CPSF6
NEDD1ENSG00000139350.7425.21650629.45860-0.565906.116705.23230HepG2CELF1
NEDD1ENSG00000139350.7343.77520471.05220-0.454402.002701.33340HepG2DDX55
NEDD1ENSG00000139350.7500.98860650.14690-0.376002.282801.36470HepG2DDX5
NEDD1ENSG00000139350.7363.44230575.61180-0.663404.399703.63490HepG2DDX6
NEDD1ENSG00000139350.7335.94030465.20530-0.469702.971801.96120HepG2DHX30
NEDD1ENSG00000139350.7305.40620482.33970-0.659306.300305.27300HepG2DNAJC21
NEDD1ENSG00000139350.7253.23790478.03340-0.9166012.9410011.64040HepG2DNAJC2
NEDD1ENSG00000139350.7312.03800553.36410-0.826506.883605.97690HepG2EIF2S1
NEDD1ENSG00000139350.7230.27510412.33630-0.840506.236404.91940HepG2EIF3D
NEDD1ENSG00000139350.7413.74290611.53940-0.563703.480602.76560HepG2EIF4A3
NEDD1ENSG00000139350.7257.19760368.47960-0.518703.314902.02110HepG2FAM120A
NEDD1ENSG00000139350.7376.17040572.36580-0.605604.084203.28450HepG2G3BP1
NEDD1ENSG00000139350.7355.911201057.78080-1.5715015.8331014.42190HepG2GPKOW
NEDD1ENSG00000139350.7382.62420486.96010-0.347901.871201.32810HepG2HNRNPA1
NEDD1ENSG00000139350.7391.99050569.35470-0.538503.436202.64330HepG2HNRNPF
NEDD1ENSG00000139350.7447.10400579.54610-0.374302.027801.42380HepG2HNRNPK
NEDD1ENSG00000139350.7446.23250616.66940-0.466705.136004.24080HepG2HNRNPL
NEDD1ENSG00000139350.7562.753201009.45200-0.843006.232205.32960HepG2HNRNPLL
NEDD1ENSG00000139350.7401.55570538.05770-0.422203.640002.95330HepG2HNRNPU
NEDD1ENSG00000139350.7368.42590560.66020-0.605804.746403.82120HepG2IGF2BP1
NEDD1ENSG00000139350.7327.72600581.80130-0.828007.318606.27440HepG2IGF2BP2
NEDD1ENSG00000139350.7435.96080549.61080-0.334202.959202.20340HepG2ILF2
NEDD1ENSG00000139350.7405.38560585.18520-0.529602.813501.80350HepG2KHSRP
NEDD1ENSG00000139350.7688.120701030.90010-0.583204.144603.12390HepG2LARP4
NEDD1ENSG00000139350.7452.71490617.21170-0.447202.602901.96610HepG2MAGOH
NEDD1ENSG00000139350.7418.08170620.66960-0.570003.543402.83760HepG2MATR3
NEDD1ENSG00000139350.7346.69390478.78780-0.465702.801401.57960HepG2NAA15
NEDD1ENSG00000139350.7538.21780671.24080-0.318602.438401.72480HepG2NOL12
NEDD1ENSG00000139350.7277.54000432.52080-0.640102.395201.38370HepG2NONO
NEDD1ENSG00000139350.7377.03990565.78240-0.585503.902603.05640HepG2PABPC4
NEDD1ENSG00000139350.7423.34580532.60450-0.331202.314901.53340HepG2PARN
NEDD1ENSG00000139350.7410.97250524.83860-0.352802.592602.00020HepG2PCBP1
NEDD1ENSG00000139350.7316.97360517.54220-0.707304.158002.90100HepG2PCBP2
NEDD1ENSG00000139350.7219.07040363.40910-0.730204.195803.22530HepG2PRPF8
NEDD1ENSG00000139350.7515.96620640.72700-0.312401.978101.46270HepG2PUF60
NEDD1ENSG00000139350.7540.19180680.12360-0.332303.331602.69360HepG2PUM1
NEDD1ENSG00000139350.7482.41390679.64950-0.494504.543503.69460HepG2PUM2
NEDD1ENSG00000139350.7384.13720490.20120-0.351802.181101.61880HepG2PUS1
NEDD1ENSG00000139350.7457.05580578.40030-0.339702.224501.65410HepG2QKI
NEDD1ENSG00000139350.7407.18390572.58680-0.491802.903201.88520HepG2RBM27
NEDD1ENSG00000139350.7239.22080464.96460-0.958806.748905.09270HepG2RCC2
NEDD1ENSG00000139350.7436.29770613.20950-0.491103.227302.49810HepG2RPLP0
NEDD1ENSG00000139350.7338.86830490.55210-0.533702.490101.59310HepG2RPS10
NEDD1ENSG00000139350.7497.66890614.28260-0.303702.558701.88060HepG2SLBP
NEDD1ENSG00000139350.7350.43000558.81260-0.673208.573707.54080HepG2SMN1
NEDD1ENSG00000139350.7700.449301111.77540-0.666504.136703.17210HepG2SNRNP70
NEDD1ENSG00000139350.7528.26680783.83780-0.569307.180006.47700HepG2SRFBP1
NEDD1ENSG00000139350.7424.76840632.58100-0.574606.550505.64320HepG2SRSF5
NEDD1ENSG00000139350.7360.75370559.34330-0.632706.013605.05050HepG2SRSF7
NEDD1ENSG00000139350.7337.36730472.13650-0.484904.189203.53610HepG2SRSF9
NEDD1ENSG00000139350.7555.38590719.45620-0.373403.959503.23930HepG2SUCLG1
NEDD1ENSG00000139350.7254.91960468.93400-0.879306.089405.14430HepG2SUPV3L1
NEDD1ENSG00000139350.7589.56340983.67880-0.738505.253104.29810HepG2TARDBP
NEDD1ENSG00000139350.7223.24260314.31540-0.493602.236901.33180HepG2TFIP11
NEDD1ENSG00000139350.7203.25980522.88220-1.3632020.2868019.16160HepG2TIAL1
NEDD1ENSG00000139350.7314.25160527.49350-0.747209.262008.32260HepG2TRIM56
NEDD1ENSG00000139350.7162.65670277.01980-0.768204.389203.43170HepG2UCHL5
NEDD1ENSG00000139350.7342.51260586.90520-0.7770010.382309.18270HepG2UPF1
NEDD1ENSG00000139350.7254.11770429.42320-0.756903.884902.68280HepG2UPF2
NEDD1ENSG00000139350.7238.91820461.61380-0.950207.377706.20760HepG2XRN2
NEDD1ENSG00000139350.7396.03600645.48270-0.7047010.397509.50720HepG2ZNF622
NEDD1ENSG00000139350.71171.04860970.090500.271502.529801.98240K562AGGF1
NEDD1ENSG00000139350.7801.156201111.62410-0.472504.500602.85710K562APOBEC3C
NEDD1ENSG00000139350.7788.61540978.85740-0.311802.042901.52350K562AQR
NEDD1ENSG00000139350.7931.015601118.11830-0.264202.340301.32990K562CPEB4
NEDD1ENSG00000139350.7780.088901001.64060-0.360702.165701.46330K562CPSF6
NEDD1ENSG00000139350.7497.81330689.41250-0.469802.777801.46790K562DDX6
NEDD1ENSG00000139350.7572.84990746.93800-0.382803.479002.10690K562EIF2S1
NEDD1ENSG00000139350.7379.43480565.90090-0.576705.356004.26370K562EIF3G
NEDD1ENSG00000139350.7454.91040710.42050-0.643106.147204.93260K562EIF4A3
NEDD1ENSG00000139350.7475.83530639.78920-0.427103.633102.27770K562EIF4B
NEDD1ENSG00000139350.7757.47640567.966000.415302.579701.49820K562FKBP4
NEDD1ENSG00000139350.7566.22760738.81040-0.383803.227102.58150K562FXR1
NEDD1ENSG00000139350.71158.82930818.738800.501102.282801.64840K562G3BP2
NEDD1ENSG00000139350.7524.56780956.35860-0.866406.697005.46500K562GPKOW
NEDD1ENSG00000139350.7581.13730903.58260-0.636804.419403.46800K562GRSF1
NEDD1ENSG00000139350.7681.62680900.71800-0.402102.517501.71400K562MAGOH
NEDD1ENSG00000139350.7720.59350933.49650-0.373502.277801.48450K562METAP2
NEDD1ENSG00000139350.7884.78790666.841500.407902.511301.72030K562PCBP3
NEDD1ENSG00000139350.7678.40880511.471800.407403.102202.25190K562POLR2G
NEDD1ENSG00000139350.7723.72660975.84040-0.431202.069501.36320K562PPIG
NEDD1ENSG00000139350.7364.33140586.49110-0.686905.629604.26810K562PSIP1
NEDD1ENSG00000139350.71151.609501432.50410-0.314903.051102.04570K562PUM2
NEDD1ENSG00000139350.71652.672001001.118200.723109.047808.11440K562PUS1
NEDD1ENSG00000139350.7305.93330535.12490-0.806708.044606.35670K562RCC2
NEDD1ENSG00000139350.7502.43730831.07850-0.726007.945605.05340K562RECQL
NEDD1ENSG00000139350.7560.97800757.07130-0.432502.324501.41660K562RPS3
NEDD1ENSG00000139350.7724.598101264.00790-0.802803.599002.03190K562SFPQ
NEDD1ENSG00000139350.7321.50350507.28120-0.658004.957103.46400K562SRFBP1
NEDD1ENSG00000139350.7503.52490868.27140-0.786106.638705.50070K562TARDBP
NEDD1ENSG00000139350.7601.65920837.51410-0.477202.977102.12420K562TIA1
NEDD1ENSG00000139350.7345.77140564.10300-0.706105.414304.06250K562TIAL1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NEDD1 is not available on ENCORE database.





12 RBPs can affect the splicing of NEDD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENEDD1ENSG00000139350.7chr12+9731861097318715973137629731390397328753973287580.135000.000640.01459includedK562SF3B4
SENEDD1ENSG00000139350.7chr12+973287539732898397313762973139039733038897330590-0.101000.001300.01767excludedHepG2U2AF2
SENEDD1ENSG00000139350.7chr12+973287539732898397313762973139039733038897330590-0.123000.000820.01032excludedK562AQR
SENEDD1ENSG00000139350.7chr12+973363549733640297334186973343159733733797337540-0.145000.000000.00011excludedK562AQR
SENEDD1ENSG00000139350.7chr12+9731861097318715973137629731390397328753973287580.074000.000030.01114includedK562DROSHA
SENEDD1ENSG00000139350.7chr12+973287539732898397313762973139039733038897330590-0.060000.000860.01501excludedK562PUS1
SENEDD1ENSG00000139350.7chr12+9732875397328983973137629731390397330388973305900.059000.002260.08168includedHepG2SFPQ
SENEDD1ENSG00000139350.7chr12+9731861097318715973137629731390397328753973289830.106000.005510.08733includedK562U2AF1
SENEDD1ENSG00000139350.7chr12+973287539732898397313762973139039733038897330590-0.114000.001850.04949excludedHepG2SF3A3
SENEDD1ENSG00000139350.7chr12+9732875397328983973137629731390397330388973305900.059000.000380.04784includedHepG2RBFOX2
SENEDD1ENSG00000139350.7chr12+9731861097318715973137629731390397328753973287580.172000.001100.04048includedK562TARDBP
SENEDD1ENSG00000139350.7chr12+9731861097318715973137629731390397328753973287580.151000.001140.04971includedK562HNRNPK
A3SSNEDD1ENSG00000139350.7chr12+9733632397336402973363549733640297334148973343150.067000.001930.01244longerK562AQR
A3SSNEDD1ENSG00000139350.7chr12+9734519097345276973452099734527697339470973396270.090000.000020.00017longerK562AQR
MXENEDD1ENSG00000139350.7chr12+97313762973139039732875397328983973012439730140297330388973305900.110000.000980.008981includedK562AQR
MXENEDD1ENSG00000139350.7chr12+97313762973139039732875397328983973013819730163497330388973305900.088000.001220.042441includedHepG2SF3A3
MXENEDD1ENSG00000139350.7chr12+97313762973139039732875397328983973013819730163497330388973305900.057000.004410.027511includedHepG2U2AF2
MXENEDD1ENSG00000139350.7chr12+97301381973014029731139897311515973010349730107897313762973139030.376000.001230.023311includedK562SF3B4
MXENEDD1ENSG00000139350.7chr12+97301381973014029731376297313903973010349730107897328753973289830.460000.001200.028341includedK562SUPV3L1
MXENEDD1ENSG00000139350.7chr12+97301381973014029731139897311515973010349730107897313762973139030.567000.000470.013801includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NEDD1 is not avaliable on ENCORE database.