RP11-43F13.1

General Information

Gene Name       : RP11-43F13.1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-43F13.1)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-43F13.1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • RP11-43F13.1 RNA is bound by 8 proteins.  







eCLIP assay for RP11-43F13.1 is not avaliable on ENCORE database.





8 proteins are bound to RP11-43F13.1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr516207661620828-intron-Distal5.1837110.02215K562HNRNPM
chr516195571619610-intron-Distal4.258273.89080K562EXOSC5
chr516208721620937-intron-Distal6.1309817.99505K562EXOSC5
chr516241301624187-intron-Distal5.9615316.32087K562EXOSC5
chr516215531621611-intron-Distal4.180914.88554HepG2BCCIP
chr516207821620807-intron-Distal5.014997.71312K562EXOSC5
chr516244951624550-intron-Distal4.558415.16513HepG2HNRNPM
chr516244741624555-intron-Distal6.2020315.98693K562EXOSC5
chr516243831624442-intron-Distal4.668654.12563HepG2EXOSC5
chr516244001624431-intron-Distal4.318714.78076K562HNRNPM
chr516244871624582-intron-Distal5.476898.15874K562HNRNPM
chr516238221623860-intron-Distal3.925093.66782HepG2HNRNPM
chr516230541623098-intron-Distal4.079243.79821HepG2BCCIP
chr516248901624961-intron-Distal5.3624411.55909K562HNRNPM
chr516193681619434-intron-Distal4.720526.41216K562EXOSC5
chr516215661621610-intron-Distal6.0785016.65712K562EXOSC5
chr516194581619523-intron-Distal4.507683.14677HepG2EXOSC5
chr516339461634063-intron-Distal,intron-Proximal4.365449.06301K562DDX3X
chr516241971624288-intron-Distal5.2842911.57443HepG2BCCIP
chr516226431622680-intron-Distal4.283174.52011K562HNRNPM
chr516238191623862-intron-Distal4.416825.14871HepG2BCCIP
chr516339511634072-intron-Distal,intron-Proximal3.419673.03570HepG2NCBP2
chr516208541620939-intron-Distal4.591666.50992HepG2BCCIP
chr516216731621733-intron-Distal3.897454.38996HepG2HNRNPM
chr516212971621367-intron-Distal5.9135514.31968K562EXOSC5
chr516207021620725-intron-Distal4.894496.41216K562EXOSC5
chr516220321622088-intron-Distal4.521415.16513HepG2HNRNPM
chr516214231621509-intron-Distal4.7165415.47125K562EXOSC5
chr516219481622010-intron-Distal5.085309.21000K562HNRNPM
chr516107171610808-intron-Distal4.5570114.69178K562SLTM
chr516251581625211-intron-Distal4.494694.05245HepG2EXOSC5
chr516230471623098-intron-Distal4.559199.69330K562EXOSC5
chr516226991622726-intron-Distal4.846057.06134K562EXOSC5
chr516223251622347-intron-Distal4.873096.73640K562EXOSC5
chr516192321619271-intron-Distal3.921933.54147K562HNRNPM
chr516238211623862-intron-Distal5.394498.36716K562EXOSC5
chr516213291621387-intron-Distal4.129374.38533HepG2BCCIP
chr516208281620952-intron-Distal5.9027716.28198K562HNRNPM
chr516339591634080-intron-Distal,intron-Proximal4.068274.61051HepG2DDX3X
chr516220101622114-intron-Distal5.6503713.42189K562HNRNPM
chr516236391623678-intron-Distal5.6117511.33292K562EXOSC5
chr516251251625202-intron-Distal4.1795115.40887K562EXOSC5
chr516186291618698-intron-Distal5.253428.67086K562HNRNPM
chr516218701621948-intron-Distal5.6532914.48355K562HNRNPM
chr516219481621985-intron-Distal5.254728.69609K562EXOSC5
chr516251181625203-intron-Distal3.856883.90822HepG2HNRNPM
chr516241271624191-intron-Distal5.058038.15874K562HNRNPM
chr516250831625196-intron-Distal4.609056.74515HepG2BCCIP
chr516229861622995-intron-Distal4.509025.44433K562EXOSC5
chr516242201624302-intron-Distal4.047813.90822HepG2HNRNPM
chr516293631629452-intron-Distal3.903383.71735K562TIA1
chr516107011610805-intron-Distal3.447415.10467K562SAFB2
chr516238161623876-intron-Distal5.173187.38107K562HNRNPM
chr516220491622198-intron-Distal6.1021533.01967K562EXOSC5
chr516226501622679-intron-Distal5.386248.69493K562EXOSC5
chr516194341619525-intron-Distal4.6468410.61559K562EXOSC5
chr516214481621528-intron-Distal4.280924.40649HepG2BCCIP
chr516245951624639-intron-Distal5.290097.71312K562EXOSC5
chr516210371621070-intron-Distal4.926556.73731K562EXOSC5
chr516218771621924-intron-Distal5.386248.69493K562EXOSC5
chr516247911624830-intron-Distal4.177804.24629HepG2BCCIP
chr516239201623968-intron-Distal5.426558.36716K562EXOSC5
chr516216101621671-intron-Distal5.8257312.32698K562EXOSC5
chr516233551623390-intron-Distal3.696967.56595K562EXOSC5
chr516185591618620-intron-Distal4.008685.06094K562HNRNPM
chr516239171623980-intron-Distal4.872327.97545HepG2BCCIP
chr516216451621711-intron-Distal4.290334.45655HepG2BCCIP
chr516216711621725-intron-Distal5.5070211.00212K562EXOSC5
chr516216451621728-intron-Distal5.308238.94476K562HNRNPM
chr516236511623714-intron-Distal5.269465.90029HepG2EXOSC5
chr516181131618171-intron-Distal3.486703.14999K562EXOSC5
chr516251341625197-intron-Distal5.225359.48713K562HNRNPM
chr516206571620706-intron-Distal4.802937.14250K562HNRNPM
chr516206791620805-intron-Distal4.365778.70378HepG2HNRNPM
chr516230721623106-intron-Distal4.508685.84413K562HNRNPM
chr516241931624248-intron-Distal4.253108.56038K562HNRNPM
chr516236381623713-intron-Distal4.209868.16142HepG2BCCIP
chr516248061624873-intron-Distal5.262859.21686K562HNRNPM
chr516214951621693-intron-Distal6.3254810.62816HepG2EXOSC5
chr516224151622453-intron-Distal5.243987.38693K562EXOSC5
chr516208461620916-intron-Distal4.800165.05990HepG2EXOSC5
chr516220961622161-intron-Distal4.515665.60124HepG2BCCIP
chr516248211624866-intron-Distal5.078195.43487HepG2EXOSC5
chr516242461624309-intron-Distal5.742078.72459HepG2EXOSC5
chr516185151618578-intron-Distal5.118218.36716K562EXOSC5
chr516247851624831-intron-Distal5.488767.71416K562EXOSC5
chr516207061620766-intron-Distal5.082908.67086K562HNRNPM
chr516241871624268-intron-Distal6.7745325.04720K562EXOSC5
chr516211851621260-intron-Distal6.0263015.98693K562EXOSC5
chr516197091619762-intron-Distal4.012223.29197K562HNRNPM
chr516187821618815-intron-Distal4.208503.59909K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-43F13.1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-43F13.1 is not available on ENCORE database.

  • 35 RBPs can affect the levels of RP11-43F13.1.  








The Knockdown/knockout RNA-Seq assay for RP11-43F13.1 is not available on ENCORE database.





35 RBPs can affect the gene expression of RP11-43F13.1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-43F13.1ENSG00000188002.6310.25640236.795100.389702.149601.59900HepG2ACO1
RP11-43F13.1ENSG00000188002.6311.26450237.908600.387602.055201.38140HepG2AKAP8L
RP11-43F13.1ENSG00000188002.6331.10380218.800500.597603.404002.74720HepG2BOP1
RP11-43F13.1ENSG00000188002.6291.98720219.002100.414902.499501.70320HepG2DDX19B
RP11-43F13.1ENSG00000188002.6324.87800228.885400.505202.601101.94010HepG2DDX21
RP11-43F13.1ENSG00000188002.6604.48460366.548300.721605.089704.27470HepG2DDX6
RP11-43F13.1ENSG00000188002.6274.02850389.37680-0.506802.487001.87970HepG2EIF4A3
RP11-43F13.1ENSG00000188002.6570.74930445.748200.356502.821902.21630HepG2ETF1
RP11-43F13.1ENSG00000188002.6283.72670392.89760-0.469702.255801.62860HepG2FXR1
RP11-43F13.1ENSG00000188002.6440.69710336.082000.390902.933901.97470HepG2HNRNPA2B1
RP11-43F13.1ENSG00000188002.6269.47910370.45230-0.459102.195901.58600HepG2IGF2BP2
RP11-43F13.1ENSG00000188002.6448.71820300.641100.577702.956902.09770HepG2LARP4
RP11-43F13.1ENSG00000188002.6264.90820393.03490-0.569203.109702.41490HepG2MAGOH
RP11-43F13.1ENSG00000188002.6163.63970395.22930-1.2722010.510109.33970HepG2MATR3
RP11-43F13.1ENSG00000188002.6223.69330351.55060-0.652205.008704.22930HepG2PCBP1
RP11-43F13.1ENSG00000188002.6275.68550357.72540-0.375801.858101.39240HepG2PTBP1
RP11-43F13.1ENSG00000188002.6243.19080346.13480-0.509202.505901.93490HepG2PUF60
RP11-43F13.1ENSG00000188002.6479.02850248.518700.946705.166804.21980HepG2RAVER1
RP11-43F13.1ENSG00000188002.6274.70430398.10610-0.535303.577802.97870HepG2NELFE
RP11-43F13.1ENSG00000188002.6262.91260370.79610-0.496003.138802.48770HepG2RECQL
RP11-43F13.1ENSG00000188002.6261.28070366.69630-0.489002.222901.61720HepG2SF3A3
RP11-43F13.1ENSG00000188002.6357.09900239.350400.577102.310401.59900HepG2SNRNP70
RP11-43F13.1ENSG00000188002.6594.44130420.806400.498304.822204.21330HepG2SRFBP1
RP11-43F13.1ENSG00000188002.6151.67000388.73410-1.3578016.2616015.31800HepG2SRSF1
RP11-43F13.1ENSG00000188002.6207.46790135.168600.618002.004401.35820HepG2UCHL5
RP11-43F13.1ENSG00000188002.6287.95920357.66180-0.312701.771601.30780HepG2ZNF622
RP11-43F13.1ENSG00000188002.6519.35290685.24720-0.399902.500701.93650K562AQR
RP11-43F13.1ENSG00000188002.6386.44170546.87570-0.501004.539603.73210K562DDX47
RP11-43F13.1ENSG00000188002.6344.03070450.12260-0.387802.595801.89450K562EIF2S2
RP11-43F13.1ENSG00000188002.6253.79570357.13080-0.492802.602701.83120K562GPKOW
RP11-43F13.1ENSG00000188002.6350.61650474.43730-0.436302.788601.59240K562IGF2BP3
RP11-43F13.1ENSG00000188002.6362.91460489.13370-0.430602.844201.90760K562MATR3
RP11-43F13.1ENSG00000188002.6465.41500666.18200-0.517404.401103.20490K562MBNL1
RP11-43F13.1ENSG00000188002.6522.59360392.693000.412202.098001.37360K562PCBP3
RP11-43F13.1ENSG00000188002.6201.34860291.43230-0.533502.040901.34490K562RPS19
RP11-43F13.1ENSG00000188002.6234.26370466.86420-0.9949010.379409.02500K562SRSF1
RP11-43F13.1ENSG00000188002.6178.20380277.05880-0.636702.835501.80650K562SUPV3L1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-43F13.1 is not available on ENCORE database.





22 RBPs can affect the splicing of RP11-43F13.1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERP11-43F13.1ENSG00000188002.6chr5-1600432160063715990341599942160280516028500.244000.000000.00095includedK562FTO
SERP11-43F13.1ENSG00000188002.6chr5-160043216006371599034159994216028051602850-0.279000.000170.08895excludedHepG2NKRF
SERP11-43F13.1ENSG00000188002.6chr5-160043216006371599034159994216028051602850-0.266000.003700.05970excludedHepG2U2AF1
SERP11-43F13.1ENSG00000188002.6chr5-1630523163068116291151629745163275816328660.164000.001520.09896includedHepG2TBRG4
SERP11-43F13.1ENSG00000188002.6chr5-160043216006371599034159994216028051602850-0.293000.000630.05192excludedHepG2TBRG4
SERP11-43F13.1ENSG00000188002.6chr5-1630523163068116291151629745163275816328590.088000.001330.09510includedHepG2QKI
SERP11-43F13.1ENSG00000188002.6chr5-160043216006371599034159994216028051602850-0.306000.001130.07617excludedHepG2DDX3X
SERP11-43F13.1ENSG00000188002.6chr5-163052316306811629115162974516327581632866-0.095000.000010.00259excludedHepG2DDX6
SERP11-43F13.1ENSG00000188002.6chr5-1600432160063715990341599942160280516028500.228000.000070.02075includedHepG2RBM15
SERP11-43F13.1ENSG00000188002.6chr5-1600432160063715990341599942160280516028500.297000.001020.09240includedHepG2RBFOX2
SERP11-43F13.1ENSG00000188002.6chr5-1630523163068116291151629745163275816328590.138000.000080.00595includedHepG2SF3B4
SERP11-43F13.1ENSG00000188002.6chr5-1630523163068116291151629745163275816328660.192000.000200.03414includedK562RBM22
SERP11-43F13.1ENSG00000188002.6chr5-1630523163068116291151629745163275816328660.129000.002300.07057includedK562TARDBP
SERP11-43F13.1ENSG00000188002.6chr5-163052316306811629115162974516327581632866-0.086000.001020.02776excludedK562RBM15
SERP11-43F13.1ENSG00000188002.6chr5-1630523163068116291151629745163275816328660.241000.000000.00017includedK562HNRNPK
SERP11-43F13.1ENSG00000188002.6chr5-160043216006371599034159994216028051602850-0.290000.000260.05837excludedK562SAFB
SERP11-43F13.1ENSG00000188002.6chr5-163052316306811629115162974516327581632866-0.157000.000090.07087excludedK562PABPC4
SERP11-43F13.1ENSG00000188002.6chr5-1630523163068116291151629745163275816328660.125000.003300.09678includedK562PTBP1
RIRP11-43F13.1ENSG00000188002.6chr5-163275816330211632758163286616329591633021-0.250000.000060.00745excludedHepG2DDX6
RIRP11-43F13.1ENSG00000188002.6chr5-159903415999421599034159938415997411599942-0.317000.000000.00006excludedK562HNRNPC
RIRP11-43F13.1ENSG00000188002.6chr5-1599034159994215990341599384159974115999420.471000.000450.00460includedHepG2U2AF2
RIRP11-43F13.1ENSG00000188002.6chr5-1599034159994215990341599384159974115999420.339000.000510.00781includedK562AGGF1
RIRP11-43F13.1ENSG00000188002.6chr5-1599034159994215990341599384159974115999420.182000.006170.05242includedK562AKAP8L
RIRP11-43F13.1ENSG00000188002.6chr5-1632758163302116327581632866163295916330210.269000.000730.01702includedK562U2AF1
RIRP11-43F13.1ENSG00000188002.6chr5-1632758163302116327581632866163295916330210.182000.007410.07748includedK562U2AF2
RIRP11-43F13.1ENSG00000188002.6chr5-1599034159994215990341599384159974115999420.408000.002110.02564includedHepG2NCBP2
MXERP11-43F13.1ENSG00000188002.6chr5-16305231630681163275816328661628869162974516329591633021-0.155000.004750.075792includedHepG2SRSF1
MXERP11-43F13.1ENSG00000188002.6chr5-16305231630681163275816328661628869162974516329591633021-0.200000.001140.021052includedK562SRSF1
MXERP11-43F13.1ENSG00000188002.6chr5-16305231630681163275816328661628869162974516329591633021-0.114000.002040.063682includedHepG2SF3B4
MXERP11-43F13.1ENSG00000188002.6chr5-16305231630681163275816328591628869162974516329591633021-0.158000.000920.035502includedHepG2SF3B4
MXERP11-43F13.1ENSG00000188002.6chr5-16305231630681163275816328661628869162974516329591633021-0.226000.000200.022732includedK562RBM22
MXERP11-43F13.1ENSG00000188002.6chr5-163052316306811632758163286616288691629745163295916330210.106000.000180.014881includedHepG2DDX6
MXERP11-43F13.1ENSG00000188002.6chr5-163052316306811632758163287916288691629745163295916330210.115000.000640.040801includedHepG2DDX6
MXERP11-43F13.1ENSG00000188002.6chr5-16305231630681163275816328661628869162974516329591633021-0.214000.000040.006442includedK562HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RP11-43F13.1 is not avaliable on ENCORE database.