KCNN1

General Information

Gene Name       : KCNN1
Gene ID             : ENSG00000105642.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KCNN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KCNN1ENSG00000105642.150.060.030.04ENCSR000AEF
HepG2KCNN1ENSG00000105642.150.000.000.00ENCSR985KAT
K562KCNN1ENSG00000105642.150.760.170.47ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KCNN1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on KCNN1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for KCNN1 is not avaliable on ENCORE database.






NO known proteins are bound to KCNN1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for KCNN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KCNN1 is not available on ENCORE database.

  • 28 RBPs can affect the levels of KCNN1.  








The Knockdown/knockout RNA-Seq assay for KCNN1 is not available on ENCORE database.





28 RBPs can affect the gene expression of KCNN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KCNN1ENSG00000105642.119.833100.0000099999.999902.271501.78430HepG2AKAP1
KCNN1ENSG00000105642.1114.7619056.41770-1.934302.558301.42820K562AARS
KCNN1ENSG00000105642.11131.1584072.994000.845403.408002.79060K562AGGF1
KCNN1ENSG00000105642.1179.9438031.253501.354904.063602.27640K562BUD13
KCNN1ENSG00000105642.1187.5264043.554501.006802.642501.62040K562CCAR1
KCNN1ENSG00000105642.11162.7589082.585800.978703.198102.00220K562CPEB4
KCNN1ENSG00000105642.11119.6820067.276600.830902.979001.89670K562DDX3X
KCNN1ENSG00000105642.11117.0742068.207100.779302.789301.47470K562DDX6
KCNN1ENSG00000105642.11222.75380132.537800.748903.478602.42840K562EIF4G2
KCNN1ENSG00000105642.1195.1896035.418301.426205.749303.88130K562EXOSC5
KCNN1ENSG00000105642.1116.4285073.09110-2.153507.655506.71620K562FXR1
KCNN1ENSG00000105642.1198.9205047.452501.059703.293502.42900K562GPKOW
KCNN1ENSG00000105642.11146.1898077.212100.920803.765302.50520K562HNRNPL
KCNN1ENSG00000105642.1187.5891037.403101.227503.676102.14030K562NONO
KCNN1ENSG00000105642.1111.2053034.55940-1.624902.693801.90510K562POLR2G
KCNN1ENSG00000105642.1198.8131036.626701.431705.721904.46940K562PPIG
KCNN1ENSG00000105642.1110.6274036.94130-1.797502.851002.09150K562PRPF8
KCNN1ENSG00000105642.11232.76610150.695000.627102.613801.67970K562PUM2
KCNN1ENSG00000105642.11144.3963047.959401.590004.879702.74650K562SBDS
KCNN1ENSG00000105642.1166.7688024.579901.441603.366802.19080K562SRSF4
KCNN1ENSG00000105642.11124.2870046.943001.404604.258402.22350K562STIP1
KCNN1ENSG00000105642.1110.0029034.66010-1.792903.071302.20250K562SYNCRIP
KCNN1ENSG00000105642.1167.8555035.174700.947802.218701.49240K562TIA1
KCNN1ENSG00000105642.11172.66300110.130600.648602.910701.60830K562TROVE2
KCNN1ENSG00000105642.1184.7311037.855601.162303.358502.22900K562UCHL5
KCNN1ENSG00000105642.1168.20500127.42930-0.901704.042603.03310K562WDR43
KCNN1ENSG00000105642.1199.0022038.546901.360704.914903.13340K562XRN2
KCNN1ENSG00000105642.11189.3202086.165601.135504.140703.04820K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KCNN1 is not available on ENCORE database.





1 RBPs can affect the splicing of KCNN1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKCNN1ENSG00000105642.11chr19+1810386218103871181005241810065218104298181043680.146000.002100.06593includedK562TARDBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KCNN1 is not avaliable on ENCORE database.