ZNF346

General Information

Gene Name       : ZNF346
Gene ID             : ENSG00000113761.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF346)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF346ENSG00000113761.1111.0616.8613.96ENCSR000AEF
HepG2ZNF346ENSG00000113761.1112.6312.3412.48ENCSR985KAT
K562ZNF346ENSG00000113761.1117.9116.8917.40ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ZNF346Ribo-STAMP-293TshRNAZNF346-BGRSLV07-65,ZNF346-BGRSLV07-66NT-BGRSLV07-1,NT-BGRSLV07-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF346 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF346 RNA is bound by 9 proteins.  







eCLIP assay for ZNF346 is not avaliable on ENCORE database.





9 proteins are bound to ZNF346 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5176492863176492951+3'-UTR,intron-Distal4.7264919.56462K562TARDBP
chr5176491791176491934+3'-UTR,intron-Distal3.871419.13151K562UPF1
chr5176492868176492969+3'-UTR,intron-Distal,polyA_site4.8288541.05651K562UPF1
chr5176492780176492851+3'-UTR,intron-Distal5.224639.00303HepG2PCBP2
chr5176477886176477979+3'-UTR,CDS,intron-Distal,intron-Proximal4.9318518.12830HepG2PRPF8
chr5176492847176492946+3'-UTR,intron-Distal3.899505.17677K562EIF4G2
chr5176449886176449967+CDS,intron-Proximal4.733475.35117HepG2PRPF8
chr5176471376176471420+CDS,intron-Distal,intron-Proximal4.122363.12827HepG2U2AF2
chr5176450249176450378+intron-Distal,intron-Proximal4.684516.85275HepG2HNRNPK
chr5176459742176459854+intron-Distal4.401054.36866HepG2ILF3
chr5176502320176502399+intron-Distal4.619353.37054HepG2XPO5
chr5176494285176494343+intron-Distal3.132734.26467K562UPF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF346 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF346 is not available on ENCORE database.

  • 51 RBPs can affect the levels of ZNF346.  








The Knockdown/knockout RNA-Seq assay for ZNF346 is not available on ENCORE database.





51 RBPs can affect the gene expression of ZNF346 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF346ENSG00000113761.7561.95680430.451700.384501.744501.31160HepG2AKAP1
ZNF346ENSG00000113761.7498.68170308.061600.694805.392004.59110HepG2BOP1
ZNF346ENSG00000113761.7196.76680282.80410-0.523302.399101.75240HepG2CPSF6
ZNF346ENSG00000113761.7380.74700254.114500.583303.516202.75930HepG2DDX21
ZNF346ENSG00000113761.7186.67480305.06070-0.708603.333002.49400HepG2DDX55
ZNF346ENSG00000113761.7373.27720292.721200.350601.879301.30460HepG2DKC1
ZNF346ENSG00000113761.7253.32940366.38230-0.532302.159401.54930HepG2EIF4B
ZNF346ENSG00000113761.7301.53110423.60400-0.490402.738201.92770HepG2EIF4G2
ZNF346ENSG00000113761.7190.69710298.94710-0.648603.949502.95270HepG2EWSR1
ZNF346ENSG00000113761.7252.37320368.34010-0.545502.400301.67860HepG2FIP1L1
ZNF346ENSG00000113761.7309.29760411.93160-0.413402.620301.70870HepG2HNRNPA2B1
ZNF346ENSG00000113761.7260.74600356.57980-0.451602.087301.47470HepG2HNRNPK
ZNF346ENSG00000113761.7211.61060360.09500-0.767004.085202.84810HepG2KHSRP
ZNF346ENSG00000113761.7559.63070379.785600.559203.577602.83110HepG2MAGOH
ZNF346ENSG00000113761.7561.08370381.920200.554803.265002.58410HepG2MATR3
ZNF346ENSG00000113761.758.20730162.20570-1.478606.870005.43050HepG2PABPC1
ZNF346ENSG00000113761.7256.33620348.17680-0.441801.976301.35730HepG2PABPC4
ZNF346ENSG00000113761.7251.06100450.05660-0.842107.859506.75540HepG2PUM2
ZNF346ENSG00000113761.7263.24810383.84640-0.544103.603602.90430HepG2QKI
ZNF346ENSG00000113761.7303.57460421.19530-0.472403.000102.10920HepG2RBM15
ZNF346ENSG00000113761.7267.88800348.35370-0.378901.863501.30120HepG2RBM25
ZNF346ENSG00000113761.7553.95870394.416700.490003.842303.22480HepG2NELFE
ZNF346ENSG00000113761.7262.65580178.262600.559102.209001.49370HepG2RPS3A
ZNF346ENSG00000113761.7280.75190406.82300-0.535104.180203.34320HepG2SLBP
ZNF346ENSG00000113761.7212.57180529.30360-1.3161011.2450010.41950HepG2SRFBP1
ZNF346ENSG00000113761.7217.65170313.32230-0.525603.537302.93040HepG2SRSF9
ZNF346ENSG00000113761.7196.96220303.68440-0.624702.688102.02010HepG2SUPV3L1
ZNF346ENSG00000113761.7133.95280203.54970-0.603702.630601.65530HepG2TFIP11
ZNF346ENSG00000113761.7193.23870315.09260-0.705403.852803.11590HepG2U2AF1
ZNF346ENSG00000113761.7302.19650438.75400-0.537902.476501.68790HepG2UBE2L3
ZNF346ENSG00000113761.7485.01820344.387400.493903.979903.28070HepG2UTP3
ZNF346ENSG00000113761.7407.82300652.12800-0.677208.072107.17360K562AGGF1
ZNF346ENSG00000113761.7477.61140678.56130-0.506603.993803.20690K562AKAP8L
ZNF346ENSG00000113761.71036.46320657.057400.6575010.983109.78270K562DDX47
ZNF346ENSG00000113761.7426.65720276.016900.628205.024103.96630K562EIF3G
ZNF346ENSG00000113761.7476.76470347.868200.454602.804601.97750K562EIF4A3
ZNF346ENSG00000113761.7692.42930885.15330-0.354302.829101.88050K562EIF4G2
ZNF346ENSG00000113761.7219.59450317.75700-0.533102.330001.68900K562G3BP2
ZNF346ENSG00000113761.7615.55840460.893900.417402.771002.17360K562HNRNPC
ZNF346ENSG00000113761.7262.28270405.13510-0.627303.851802.36580K562HNRNPK
ZNF346ENSG00000113761.7568.00160720.14910-0.342402.454301.68340K562KIF1C
ZNF346ENSG00000113761.7265.38130379.32310-0.515402.834701.84470K562PCBP2
ZNF346ENSG00000113761.7252.79360391.89840-0.632503.765502.89070K562PRPF8
ZNF346ENSG00000113761.7295.11260413.25240-0.485802.411701.57290K562PSIP1
ZNF346ENSG00000113761.7650.86500965.77820-0.569304.933903.84770K562PUF60
ZNF346ENSG00000113761.7470.71260655.69280-0.478204.178603.46590K562RBM15
ZNF346ENSG00000113761.7541.56390399.160200.440102.243601.51210K562RPS19
ZNF346ENSG00000113761.7215.40970335.32500-0.638502.956801.33220K562SERBP1
ZNF346ENSG00000113761.7580.34420406.116200.514903.940603.10290K562SRSF1
ZNF346ENSG00000113761.7305.25540410.97720-0.429002.316301.66600K562TARDBP
ZNF346ENSG00000113761.7309.52260422.33140-0.448302.434101.55660K562TRIM56
ZNF346ENSG00000113761.7157.29130307.96900-0.969306.388104.57490K562U2AF1
ZNF346ENSG00000113761.7115.78150318.07830-1.4580015.7535013.80950K562U2AF2
ZNF346ENSG00000113761.7866.10510638.812200.439104.770603.85370K562UPF1
ZNF346ENSG00000113761.7598.42690747.04080-0.320002.030501.30430K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF346 is not available on ENCORE database.





12 RBPs can affect the splicing of ZNF346 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF346ENSG00000113761.7chr5+1764501601764502351764497251764499141764681261764682300.258000.002090.04874includedHepG2HNRNPK
SEZNF346ENSG00000113761.7chr5+1764501821764502351764497161764499141764681261764682300.211000.003280.03291includedK562AQR
SEZNF346ENSG00000113761.7chr5+176471389176471534176468778176468871176489058176489152-0.220000.000100.00172excludedK562AQR
SEZNF346ENSG00000113761.7chr5+176489058176489152176471389176471534176491512176491602-0.121000.006670.07736excludedK562PUS1
SEZNF346ENSG00000113761.7chr5+1764501601764502351764497251764499141764681261764682300.343000.000010.00147includedK562HNRNPK
SEZNF346ENSG00000113761.7chr5+1764501601764502351764497251764499141764681261764682300.207000.002270.07398includedK562PTBP1
SEZNF346ENSG00000113761.7chr5+1764501601764502351764497251764499141764681261764682300.183000.000030.00091includedK562HNRNPC
SEZNF346ENSG00000113761.7chr5+176471389176471534176468778176468871176489058176489152-0.246000.001020.01968excludedK562HNRNPC
A3SSZNF346ENSG00000113761.7chr5+1764777031764779371764777511764779371764713891764715340.281000.000000.00011longerK562SF3B4
A3SSZNF346ENSG00000113761.7chr5+1764777031764779371764777511764779371764713891764715340.216000.000270.02514longerHepG2SF3B4
RIZNF346ENSG00000113761.7chr5+176491512176492242176491512176491602176492101176492242-0.105000.001480.01577excludedK562AKAP8L
RIZNF346ENSG00000113761.7chr5+176491512176492242176491512176491602176492101176492242-0.111000.001710.09361excludedK562ZC3H8
MXEZNF346ENSG00000113761.7chr5+1764777031764779371764890581764891521764713891764715341764915121764929660.188000.004150.060781includedK562PUS1
MXEZNF346ENSG00000113761.7chr5+176468126176468230176471467176471534176449716176449914176489058176489152-0.193000.008380.054842includedK562AQR
MXEZNF346ENSG00000113761.7chr5+176471389176471534176477751176477937176468778176468871176489058176489152-0.298000.000400.024902includedHepG2BCCIP
MXEZNF346ENSG00000113761.7chr5+176471389176471534176477703176477937176468778176468871176489058176489152-0.257000.000820.031102includedHepG2HNRNPC
MXEZNF346ENSG00000113761.7chr5+176471389176471534176477751176477937176468778176468871176489058176489152-0.244000.001560.048252includedHepG2HNRNPC
MXEZNF346ENSG00000113761.7chr5+1764687781764688711764713921764715341764681261764682301764777511764779370.156000.001890.099301includedK562RBFOX2
MXEZNF346ENSG00000113761.7chr5+176477751176477937176489058176489152176471392176471534176491512176491967-0.194000.000870.099352includedK562HNRNPM
MXEZNF346ENSG00000113761.7chr5+176477751176477937176489058176489152176471392176471534176491512176491967-0.206000.000760.092102includedK562LSM11
MXEZNF346ENSG00000113761.7chr5+1764777031764779371764890581764891521764713891764715341764915121764929660.239000.004300.058161includedK562SF3B4
MXEZNF346ENSG00000113761.7chr5+1764777031764779371764890581764891521764713891764715341764915121764929660.190000.000820.035271includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF346 is not avaliable on ENCORE database.