CCDC57

General Information

Gene Name : CCDC57
Gene ID : ENSG00000176155.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CCDC57)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CCDC57	ENSG00000176155.18	4.56	19.91	12.23	ENCSR000AEF
HepG2	CCDC57	ENSG00000176155.18	55.26	19.96	37.61	ENCSR985KAT
K562	CCDC57	ENSG00000176155.18	14.39	8.65	11.52	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CCDC57 is not avaliable on ENCORE database.

Proteins bound to RNA

CCDC57 RNA is bound by 44 proteins.

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eCLIP assay for CCDC57 is not avaliable on ENCORE database.

44 proteins are bound to CCDC57 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	80104972	80105045	-	intron-Distal	7.58267	161.36126	K562	AGGF1
chr17	80105239	80105315	-	intron-Distal	7.71296	149.95150	K562	AGGF1
chr17	80105070	80105122	-	intron-Distal	7.96284	124.92003	K562	AGGF1
chr17	80104921	80104972	-	intron-Distal	8.00752	120.20444	K562	AGGF1
chr17	80106123	80106206	-	intron-Distal	8.04775	117.84711	K562	AGGF1
chr17	80105341	80105370	-	intron-Distal	8.79372	117.63520	K562	AGGF1
chr17	80105370	80105392	-	intron-Distal	7.09073	102.47126	K562	AGGF1
chr17	80105317	80105341	-	intron-Distal	7.59894	96.92731	K562	AGGF1
chr17	80106026	80106067	-	intron-Distal	7.55953	92.88233	K562	AGGF1
chr17	80105122	80105161	-	intron-Distal	7.39044	79.79750	K562	AGGF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 213 entries

eCLIP assay for CCDC57 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CCDC57 is not available on ENCORE database.
106 RBPs can affect the levels of CCDC57.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CCDC57 is not available on ENCORE database.

106 RBPs can affect the gene expression of CCDC57 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CCDC57	ENSG00000176155.14	1167.67970	369.87670	1.65840	46.92970	45.33430	HepG2	TIAL1
CCDC57	ENSG00000176155.14	433.52590	1230.77260	-1.50540	29.91510	28.18890	K562	AQR
CCDC57	ENSG00000176155.14	1128.11700	621.50380	0.86000	22.75640	21.39130	HepG2	PUM1
CCDC57	ENSG00000176155.14	194.07740	583.50340	-1.58810	21.98500	19.86690	K562	PRPF8
CCDC57	ENSG00000176155.14	673.55900	338.19170	0.99390	19.57360	17.99020	HepG2	DNAJC2
CCDC57	ENSG00000176155.14	1076.53360	657.41320	0.71140	14.23950	13.00830	HepG2	SUCLG1
CCDC57	ENSG00000176155.14	682.68310	373.16750	0.87130	13.95340	12.82440	HepG2	TRIM56
CCDC57	ENSG00000176155.14	457.51170	819.38810	-0.84070	13.83520	12.66900	K562	AGGF1
CCDC57	ENSG00000176155.14	618.94180	338.97830	0.86850	13.38840	12.12980	HepG2	SAFB2
CCDC57	ENSG00000176155.14	688.67580	395.30990	0.80070	13.17250	11.93040	HepG2	SMN1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 125 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CCDC57 is not available on ENCORE database.

9 RBPs can affect the splicing of CCDC57 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CCDC57	ENSG00000176155.14	chr17	-	80062069	80062247	80059335	80059742	80064145	80064251	0.06000	0.00000	0.00001	included	HepG2	SRSF9
A5SS	CCDC57	ENSG00000176155.14	chr17	-	80064050	80064251	80064145	80064251	80059335	80059742	-0.08500	0.00000	0.00008	shorter	HepG2	HNRNPL
A5SS	CCDC57	ENSG00000176155.14	chr17	-	80064050	80064251	80064145	80064251	80059335	80059742	-0.07600	0.00000	0.00593	shorter	HepG2	NOL12
A5SS	CCDC57	ENSG00000176155.14	chr17	-	80156189	80156298	80156212	80156298	80153138	80153240	0.17200	0.00012	0.06930	longer	K562	PUM1
RI	CCDC57	ENSG00000176155.14	chr17	-	80151631	80152015	80151631	80151706	80151857	80152015	0.23500	0.00021	0.01280	included	K562	HNRNPUL1
SE	CCDC57	ENSG00000176155.14	chr17	-	80136902	80137065	80136349	80136481	80141649	80141808	-0.49000	0.00036	0.03395	excluded	K562	SUPV3L1
RI	CCDC57	ENSG00000176155.14	chr17	-	80151631	80152015	80151631	80151706	80151857	80152015	-0.50700	0.00186	0.02933	excluded	K562	SF3B4
SE	CCDC57	ENSG00000176155.14	chr17	-	80066643	80066830	80059627	80059742	80085567	80085694	0.13800	0.00429	0.04100	included	K562	AQR
SE	CCDC57	ENSG00000176155.14	chr17	-	80156189	80156298	80153138	80153240	80159413	80159828	-0.22700	0.00468	0.05917	excluded	K562	PUS1
A3SS	CCDC57	ENSG00000176155.14	chr17	-	80130513	80130759	80130513	80130736	80136349	80136481	0.12300	0.01431	0.07183	longer	K562	AQR

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CCDC57

General Information

Functions

Localization

Domains (AlphaFold: CCDC57)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CCDC57 is not avaliable on ENCORE database.

44 proteins are bound to CCDC57 RNA:

eCLIP assay for CCDC57 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CCDC57 is not available on ENCORE database.

106 RBPs can affect the gene expression of CCDC57 :

The Knockdown/knockout RNA-Seq assay for CCDC57 is not available on ENCORE database.

9 RBPs can affect the splicing of CCDC57 :

The Knockdown/knockout RNA-Seq assay for CCDC57 is not avaliable on ENCORE database.