Experiment Information (Status: Released)

RBP	TARDBP
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	54

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
TARDBP-1300	RBNS	20-20	1300	TARDBP_1300.fastq.gz
TARDBP-20	RBNS	20-20	20	TARDBP_20.fastq.gz
TARDBP-320	RBNS	20-20	320	TARDBP_320.fastq.gz
TARDBP-5	RBNS	20-20	5	TARDBP_5.fastq.gz
TARDBP-80	RBNS	20-20	80	TARDBP_80.fastq.gz
TARDBP-input	CN	20-20	0	TARDBP_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:TARDBP	ENCSR466JPT	experiment	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-12	ENCODE3			8133
chris-burge:TARDBP-input-cntl	ENCSR927JUW	experiment	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-12	ENCODE3			8134
chris-burge:lib-TARDBP-1	ENCLB388SLZ	library	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-12	ENCODE3			8587
chris-burge:lib-TARDBP-2	ENCLB498ECK	library	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-12	ENCODE3			8588
chris-burge:lib-TARDBP-3	ENCLB179YHZ	library	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-12	ENCODE3			8589
chris-burge:lib-TARDBP-4	ENCLB135BRA	library	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-12	ENCODE3			8590
chris-burge:lib-TARDBP-5	ENCLB233PPX	library	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-12	ENCODE3			8591
chris-burge:lib-TARDBP-input-cntl	ENCLB610UKT	library	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-12	ENCODE3			8592
chris-burge:TARDBP_1300.fastq.gz	ENCFF044GED	file_fastq	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			8981
chris-burge:TARDBP_20.fastq.gz	ENCFF147IXH	file_fastq	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			8982
chris-burge:TARDBP_320.fastq.gz	ENCFF552GCD	file_fastq	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			8983
chris-burge:TARDBP_5.fastq.gz	ENCFF023PUC	file_fastq	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			8984
chris-burge:TARDBP_80.fastq.gz	ENCFF864BPI	file_fastq	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			8985
chris-burge:TARDBP_input.fastq.gz	ENCFF483NLQ	file_fastq	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			8986
chris-burge:TARDBP_enrichment_R.4mers.txt	ENCFF979SDN	file_enrichment	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			9515
chris-burge:TARDBP_enrichment_R.5mers.txt	ENCFF022PDN	file_enrichment	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			9516
chris-burge:TARDBP_enrichment_R.6mers.txt	ENCFF484TAR	file_enrichment	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			9517
chris-burge:TARDBP_enrichment_R.7mers.txt	ENCFF769CCM	file_enrichment	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			9518
chris-burge:TARDBP_est_binding_frac.4mers.txt	ENCFF422VRS	file_library-fraction	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			9519
chris-burge:TARDBP_est_binding_frac.5mers.txt	ENCFF059ZUY	file_library-fraction	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			9520
chris-burge:TARDBP_est_binding_frac.6mers.txt	ENCFF652LRF	file_library-fraction	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			9521
chris-burge:TARDBP_est_binding_frac.7mers.txt	ENCFF363GNB	file_library-fraction	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			9522
chris-burge:K562.with_motif.TARDBP.bed.gz	ENCFF878HMC	file_bed	RNA Bind-n-Seq	TARDBP		Yes	Released	2022-07-14	ENCODE3			9750

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
TARDBP.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
TARDBP_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TARDBP_input.fastq.gz	ENCODE3
TARDBP_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TARDBP_input.fastq.gz	ENCODE3
TARDBP_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TARDBP_input.fastq.gz	ENCODE3
TARDBP_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TARDBP_input.fastq.gz	ENCODE3
TARDBP_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TARDBP_input.fastq.gz	ENCODE3
TARDBP_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
TARDBP_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TARDBP_1300.fastq.gz,TARDBP_20.fastq.gz,TARDBP_320.fastq.gz,TARDBP_5.fastq.gz,TARDBP_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
TARDBP_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TARDBP_1300.fastq.gz,TARDBP_20.fastq.gz,TARDBP_320.fastq.gz,TARDBP_5.fastq.gz,TARDBP_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
TARDBP_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TARDBP_1300.fastq.gz,TARDBP_20.fastq.gz,TARDBP_320.fastq.gz,TARDBP_5.fastq.gz,TARDBP_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
TARDBP_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TARDBP_1300.fastq.gz,TARDBP_20.fastq.gz,TARDBP_320.fastq.gz,TARDBP_5.fastq.gz,TARDBP_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
TARDBP_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TARDBP_1300.fastq.gz,TARDBP_20.fastq.gz,TARDBP_320.fastq.gz,TARDBP_5.fastq.gz,TARDBP_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
TARDBP_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TARDBP_1300.fastq.gz,TARDBP_20.fastq.gz,TARDBP_320.fastq.gz,TARDBP_5.fastq.gz,TARDBP_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
TARDBP_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TARDBP_1300.fastq.gz,TARDBP_20.fastq.gz,TARDBP_320.fastq.gz,TARDBP_5.fastq.gz,TARDBP_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
TARDBP_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TARDBP_1300.fastq.gz,TARDBP_20.fastq.gz,TARDBP_320.fastq.gz,TARDBP_5.fastq.gz,TARDBP_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
K562.with_motif.TARDBP.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	TARDBP_enrichment_R.5mers.txt,340.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3