YIPF1

General Information

Gene Name       : YIPF1
Gene ID             : ENSG00000058799.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: YIPF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878YIPF1ENSG00000058799.1419.0615.9417.50ENCSR000AEF
HepG2YIPF1ENSG00000058799.1412.0019.9415.97ENCSR985KAT
K562YIPF1ENSG00000058799.1418.0418.3518.20ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for YIPF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • YIPF1 RNA is bound by 1 proteins.  







eCLIP assay for YIPF1 is not avaliable on ENCORE database.





1 proteins are bound to YIPF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr15435538554355466-5'-UTR,intron-Distal,intron-Proximal4.733923.69821K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for YIPF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for YIPF1 is not available on ENCORE database.

  • 45 RBPs can affect the levels of YIPF1.  








The Knockdown/knockout RNA-Seq assay for YIPF1 is not available on ENCORE database.





45 RBPs can affect the gene expression of YIPF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
YIPF1ENSG00000058799.9525.39800376.386000.481102.563001.65600HepG2ABCF1
YIPF1ENSG00000058799.9491.86700323.393400.604906.169005.33420HepG2ACO1
YIPF1ENSG00000058799.9918.22240567.468900.694205.486004.76680HepG2AKAP1
YIPF1ENSG00000058799.9418.57670324.871500.365502.318301.60930HepG2AKAP8L
YIPF1ENSG00000058799.9647.31790497.077600.380903.504002.74790HepG2AUH
YIPF1ENSG00000058799.9407.60200262.835100.632903.265202.28930HepG2BCLAF1
YIPF1ENSG00000058799.9484.74880364.795800.410002.337701.78210HepG2BOP1
YIPF1ENSG00000058799.9520.07490350.118000.570804.188703.26410HepG2CALR
YIPF1ENSG00000058799.9785.39800446.092500.816008.229806.95330HepG2CIRBP
YIPF1ENSG00000058799.9412.48820323.273500.351502.295401.68120HepG2CKAP4
YIPF1ENSG00000058799.9428.99010280.915200.610704.128703.31560HepG2DDX21
YIPF1ENSG00000058799.9815.59690543.605900.585204.495603.71320HepG2DDX3X
YIPF1ENSG00000058799.9733.40360496.112900.563803.895203.14110HepG2EIF4A3
YIPF1ENSG00000058799.9771.61640570.675000.435104.413203.68520HepG2ETF1
YIPF1ENSG00000058799.9598.63010380.069700.655304.336003.38950HepG2FIP1L1
YIPF1ENSG00000058799.9118.67580335.46790-1.499106.825005.23540HepG2FTO
YIPF1ENSG00000058799.9248.75190338.88430-0.446102.176501.47140HepG2FUBP3
YIPF1ENSG00000058799.9501.50850354.583300.500003.065802.34110HepG2HNRNPC
YIPF1ENSG00000058799.9316.69690474.71630-0.584002.950001.90930HepG2KHSRP
YIPF1ENSG00000058799.9762.58030488.469400.642504.316403.27290HepG2LARP4
YIPF1ENSG00000058799.9531.25160307.648200.788007.406006.14300HepG2MSI2
YIPF1ENSG00000058799.9683.45110515.361400.407202.291401.71260HepG2NCBP2
YIPF1ENSG00000058799.9346.46880229.395700.594802.840102.02010HepG2PRPF8
YIPF1ENSG00000058799.9495.73310329.389900.589705.944705.10290HepG2PUS1
YIPF1ENSG00000058799.9617.69670476.986300.372902.938002.40840HepG2RBM22
YIPF1ENSG00000058799.9393.43830496.13610-0.334602.095501.54950HepG2RECQL
YIPF1ENSG00000058799.9364.21270209.812000.795605.954905.09330HepG2RPS19
YIPF1ENSG00000058799.9473.69760325.398400.541703.538602.63540HepG2RPS2
YIPF1ENSG00000058799.9318.79430210.585300.598103.358602.31960HepG2SERBP1
YIPF1ENSG00000058799.9651.22900538.752000.273402.140501.68200HepG2SRFBP1
YIPF1ENSG00000058799.9323.91030423.17520-0.385702.586902.04970HepG2SRSF9
YIPF1ENSG00000058799.9330.11640467.78790-0.502904.045403.45030HepG2SSB
YIPF1ENSG00000058799.9462.56220296.077500.643603.357302.62030HepG2SUPV3L1
YIPF1ENSG00000058799.9246.26320174.891800.493601.980001.33770HepG2UCHL5
YIPF1ENSG00000058799.9448.40460343.949300.382502.682902.02150HepG2ZC3H8
YIPF1ENSG00000058799.9538.11390368.109800.547705.913205.19220HepG2ZNF622
YIPF1ENSG00000058799.9806.33120604.648700.415203.206801.92440K562CCDC124
YIPF1ENSG00000058799.9544.34410389.102600.484303.100001.73480K562CIRBP
YIPF1ENSG00000058799.9411.61940314.773500.386901.988701.31520K562CPSF6
YIPF1ENSG00000058799.9594.29980465.565300.352102.652702.01270K562DDX47
YIPF1ENSG00000058799.9514.88830404.740800.347202.338701.66850K562EIF2S2
YIPF1ENSG00000058799.9564.27580385.025300.551304.123403.07490K562FIP1L1
YIPF1ENSG00000058799.9432.24740320.290000.432402.312701.52900K562FMR1
YIPF1ENSG00000058799.9414.54620283.689400.547103.697403.01290K562FXR1
YIPF1ENSG00000058799.9443.24230292.714400.598504.097503.38620K562HNRNPC
YIPF1ENSG00000058799.9756.92770521.996400.536004.386703.39190K562HSPD1
YIPF1ENSG00000058799.9237.58590380.78970-0.680505.257403.93360K562MATR3
YIPF1ENSG00000058799.91018.71270669.944100.604506.744605.46970K562PUF60
YIPF1ENSG00000058799.9771.50820522.176700.563004.305503.65040K562PUS1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for YIPF1 is not available on ENCORE database.





24 RBPs can affect the splicing of YIPF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEYIPF1ENSG00000058799.9chr1-5432067354320724543173915431794354325728543258260.369000.000000.00064includedHepG2G3BP1
SEYIPF1ENSG00000058799.9chr1-5432067354320724543173915431794354325728543258260.429000.000040.00148includedK562SRSF1
SEYIPF1ENSG00000058799.9chr1-543487855434894954344314543443955435457954354659-0.256000.000860.01856excludedK562SRSF1
SEYIPF1ENSG00000058799.9chr1-543487855434894954344314543443955435457954354659-0.202000.002030.03710excludedK562SF3B4
SEYIPF1ENSG00000058799.9chr1-5432067354320724543173915431794354325728543258260.375000.000000.00071includedHepG2RBM22
SEYIPF1ENSG00000058799.9chr1-543486155434870454344314543443955434878554348934-0.078000.000150.01413excludedHepG2RBM22
SEYIPF1ENSG00000058799.9chr1-543549165435513654354579543546595435538554355453-0.380000.000000.00000excludedHepG2U2AF1
SEYIPF1ENSG00000058799.9chr1-543549165435513654354579543546595435538554355453-0.321000.000000.00085excludedK562XRCC6
SEYIPF1ENSG00000058799.9chr1-5435491654355136543545795435465954355385543555070.286000.000090.00352includedHepG2HNRNPK
SEYIPF1ENSG00000058799.9chr1-543549165435513654354579543546595435538554355507-0.260000.000160.01852excludedHepG2TBRG4
SEYIPF1ENSG00000058799.9chr1-543549165435513654354579543546595435538554355507-0.455000.003420.03911excludedHepG2U2AF2
SEYIPF1ENSG00000058799.9chr1-5432067354320724543173915431794354325728543258260.281000.000020.00246includedHepG2AKAP1
SEYIPF1ENSG00000058799.9chr1-543439875434407554337044543371615434431454344395-0.107000.000840.01055excludedK562AQR
SEYIPF1ENSG00000058799.9chr1-5432067354320724543173915431794354325728543258260.540000.000000.00004includedHepG2PTBP1
SEYIPF1ENSG00000058799.9chr1-5434861554348704543443145434439554348785543489340.069000.000700.04567includedHepG2FTO
SEYIPF1ENSG00000058799.9chr1-5432067354320724543173915431794354325728543258260.558000.000000.00000includedHepG2MATR3
SEYIPF1ENSG00000058799.9chr1-5435491654355136543545795435465954355385543555070.417000.000030.00373includedHepG2HNRNPL
SEYIPF1ENSG00000058799.9chr1-5434861554348704543443145434439554348785543489340.182000.000170.01664includedHepG2HNRNPL
SEYIPF1ENSG00000058799.9chr1-5432067354320724543173915431794354325728543258260.379000.000240.00779includedHepG2SRSF1
SEYIPF1ENSG00000058799.9chr1-5432067354320724543173915431794354325728543258260.338000.000000.00061includedHepG2IGF2BP3
SEYIPF1ENSG00000058799.9chr1-5432067354320724543173915431794354325728543258260.476000.000030.00452includedHepG2TIAL1
SEYIPF1ENSG00000058799.9chr1-543549165435513654354579543546595435538554355507-0.405000.000000.00002excludedHepG2PCBP1
SEYIPF1ENSG00000058799.9chr1-5434861554348704543443145434439554348785543489490.138000.000230.01201includedK562TARDBP
SEYIPF1ENSG00000058799.9chr1-5435491654355136543545795435465954355385543554530.165000.001610.05398includedK562HNRNPU
SEYIPF1ENSG00000058799.9chr1-543206735432072454317391543179435432572854325826-0.402000.000020.00188excludedK562HNRNPU
SEYIPF1ENSG00000058799.9chr1-5432067354320724543173915431794354325728543258260.486000.000020.04092includedHepG2GTF2F1
SEYIPF1ENSG00000058799.9chr1-5432067354320724543173915431794354325728543258260.450000.000100.01032includedHepG2SRSF9
SEYIPF1ENSG00000058799.9chr1-5432067354320724543173915431794354325728543258260.452000.000000.00031includedHepG2KHSRP
SEYIPF1ENSG00000058799.9chr1-5432067354320724543173915431794354325728543258260.480000.000000.00003includedK562PTBP1
SEYIPF1ENSG00000058799.9chr1-543487855434894954344314543443955435457954354659-0.157000.003300.05032excludedK562HNRNPC
A3SSYIPF1ENSG00000058799.9chr1-5434398754344162543439875434407554344314543443950.177000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for YIPF1 is not avaliable on ENCORE database.