PAM16

General Information

Gene Name       : PAM16
Gene ID             : ENSG00000217930.7
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PAM16)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PAM16ENSG00000217930.75.2914.069.68ENCSR000AEF
HepG2PAM16ENSG00000217930.730.2817.2523.77ENCSR985KAT
K562PAM16ENSG00000217930.747.9232.9540.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PAM16 is not avaliable on ENCORE database.



Proteins bound to RNA

  • PAM16 RNA is bound by 33 proteins.  







eCLIP assay for PAM16 is not avaliable on ENCORE database.





33 proteins are bound to PAM16 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1643909204390973-3'-UTR,CDS,intron-Distal,intron-Proximal3.663497.42660K562PABPC4
chr1643914674391507-3'-UTR,CDS,intron-Distal,intron-Proximal4.819896.24350K562PABPC4
chr1643914584391514-3'-UTR,CDS,intron-Distal,intron-Proximal4.029497.63469K562DDX3X
chr1643909204390975-3'-UTR,CDS,intron-Distal,intron-Proximal3.813488.24027K562DDX55
chr1643909154390965-3'-UTR,CDS,intron-Distal,intron-Proximal3.758645.52342HepG2PPIG
chr1643903754390407-3'-UTR,CDS,intron-Distal3.246775.16029K562DDX55
chr1643909204390971-3'-UTR,CDS,intron-Distal,intron-Proximal4.788424.91352HepG2LARP4
chr1643913734391451-3'-UTR,CDS,intron-Distal4.127824.50960HepG2GRWD1
chr1643909844391028-3'-UTR,CDS,intron-Distal,intron-Proximal3.870983.05889HepG2SF3B4
chr1644010284401091-5'-UTR,intron-Distal,intron-Proximal3.827199.56233HepG2EFTUD2
chr1644012674401302-5'-UTR,CDS,intron-Distal,intron-Proximal3.511055.06399K562DDX3X
chr1644010504401116-5'-UTR,intron-Distal,intron-Proximal3.414453.97690HepG2XRN2
chr1644008994400958-5'-UTR,CDS,intron-Distal3.876133.53896K562NONO
chr1644010274401115-5'-UTR,intron-Distal,intron-Proximal3.660734.94042K562NONO
chr1644010444401117-5'-UTR,intron-Distal,intron-Proximal4.038903.84644HepG2NCBP2
chr1644012714401298-5'-UTR,CDS,intron-Distal,intron-Proximal3.389134.29172K562YBX3
chr1644010004401200-5'-UTR,intron-Distal,intron-Proximal3.9639113.32993HepG2FKBP4
chr1643941154394161-5'-UTR,intron-Distal,intron-Proximal5.8909512.56912HepG2DDX59
chr1644012304401267-5'-UTR,CDS,intron-Distal,intron-Proximal4.1686213.97687K562DDX3X
chr1644012054401269-5'-UTR,CDS,intron-Distal,intron-Proximal4.060566.35651HepG2NCBP2
chr1644010204401102-5'-UTR,intron-Distal,intron-Proximal3.956125.84589K562EFTUD2
chr1644010154401110-5'-UTR,intron-Distal,intron-Proximal3.564395.12571HepG2CSTF2T
chr1644009584401027-5'-UTR,intron-Distal4.228154.23759K562NONO
chr1643937384393795-5'-UTR,intron-Distal,intron-Proximal4.293294.39969K562TARDBP
chr1643939604394073-CDS,intron-Distal3.120644.77325K562NONO
chr1643932074393294-3'-UTR,CDS,intron-Distal,intron-Proximal4.342339.90371K562PABPC4
chr1643932844393362-3'-UTR,CDS,intron-Distal,intron-Proximal4.283456.96160K562SF3B4
chr1643932074393267-3'-UTR,CDS,intron-Distal,intron-Proximal4.710144.52980K562DDX6
chr1643932074393274-3'-UTR,CDS,intron-Distal,intron-Proximal4.5470615.80841K562DDX3X
chr1643915404391625-3'-UTR,CDS,intron-Distal,intron-Proximal5.172066.75320K562AQR
chr1643932714393293-3'-UTR,CDS,intron-Distal,intron-Proximal3.856524.82666HepG2DDX3X
chr1643932904393335-3'-UTR,CDS,intron-Distal,intron-Proximal4.542018.03431HepG2SF3A3
chr1643932054393273-3'-UTR,CDS,intron-Distal,intron-Proximal4.829535.77937HepG2LARP4
chr1643914904391606-3'-UTR,CDS,intron-Distal,intron-Proximal4.324686.96160K562SF3B4
chr1643932744393293-3'-UTR,CDS,intron-Distal,intron-Proximal3.930739.06301K562DDX3X
chr1643932064393271-3'-UTR,CDS,intron-Distal,intron-Proximal4.584956.83552HepG2DDX3X
chr1643932174393271-3'-UTR,CDS,intron-Distal3.893456.81514K562DDX55
chr1644011324401234-CDS,intron-Distal,intron-Proximal4.693515.68078HepG2AQR
chr1643931564393246-3'-UTR,CDS,intron-Distal,intron-Proximal4.2202014.36606HepG2PRPF8
chr1643889214388973-intron-Distal3.212084.63569HepG2RBFOX2
chr1643938614393959-intron-Distal,intron-Proximal4.807865.44904K562TARDBP
chr1644010994401193-intron-Distal,intron-Proximal4.1925413.20924HepG2EFTUD2
chr1643945654394634-intron-Distal5.1371438.37728HepG2HNRNPK
chr1644011124401183-intron-Distal,intron-Proximal3.121316.59076K562EFTUD2
chr1643945224394554-intron-Distal5.607408.44886HepG2PCBP2
chr1643947844394850-intron-Distal6.3074522.78670K562HNRNPK
chr1643945794394621-intron-Distal4.6102211.75932HepG2PCBP2
chr1643931264393207-intron-Distal,intron-Proximal5.6122710.04245K562AQR
chr1643952514395288-intron-Distal,intron-Proximal5.5170511.52296HepG2HNRNPM
chr1643877484387846-intron-Distal4.618386.10370HepG2PRPF4
chr1643981894398310-intron-Distal3.114683.75965HepG2DROSHA
chr1643947924394828-intron-Distal3.051333.71976K562HNRNPL
chr1643938944393931-intron-Distal4.341517.31982HepG2DDX59
chr1644011104401214-intron-Distal,intron-Proximal3.316586.53486HepG2CSTF2T
chr1643984384398565-intron-Distal3.093813.93430K562FUS
chr1643982794398423-intron-Distal3.852803.94652K562FUS
chr1643877314387804-intron-Distal5.302099.35257HepG2CSTF2T
chr1643947874394843-intron-Distal5.4486918.16319HepG2DDX59
chr1643879214388017-intron-Distal5.043178.83237HepG2CSTF2T
chr1644046294404781-3'-UTR,intron-Distal5.1824714.42401K562UPF1
chr1643938554393945-intron-Distal,intron-Proximal3.526835.02933K562CSTF2T
chr1643945134394556-intron-Distal4.366314.19401K562HNRNPK
chr1644011094401210-intron-Distal,intron-Proximal4.064386.71940K562PRPF8
chr1644048394404973-3'-UTR,intron-Distal,intron-Proximal3.913858.24727K562UPF1
chr1643947874394848-intron-Distal5.4002019.91536HepG2PCBP2
chr1643944474394467-intron-Distal6.0458824.33515HepG2DDX59
chr1643944344394513-intron-Distal5.2879661.07930HepG2HNRNPK
chr1643932974393395-intron-Distal,intron-Proximal4.856637.61488HepG2EFTUD2
chr1643939004393960-intron-Distal4.239164.08332K562NONO
chr1643890164389096-intron-Distal3.637746.96229HepG2CSTF2T
chr1643889264389080-intron-Distal3.417633.77708K562GTF2F1
chr1643976514397712-intron-Distal4.763356.40665K562NONO
chr1644011564401190-intron-Distal,intron-Proximal3.409213.32762HepG2DDX59
chr1644007914400873-intron-Distal3.325583.36616K562NONO
chr1643875224387585-intron-Distal3.125274.80002HepG2CSTF2T
chr1643889184388976-intron-Distal3.690518.50973HepG2CSTF2T
chr1644011334401194-intron-Distal,intron-Proximal4.136173.69238K562GTF2F1
chr1643975484397612-intron-Distal3.167205.38993K562NONO
chr1643982394398340-intron-Distal3.736975.10104K562NONO
chr1643947844394871-intron-Distal5.4597439.44993HepG2HNRNPK
chr1644010564401211-intron-Distal,intron-Proximal3.068654.19099HepG2PRPF4
chr1644007654400829-intron-Distal3.862393.37414K562CSTF2T
chr1643944424394491-intron-Distal4.7258628.47745HepG2PCBP2
chr1643974854397548-intron-Distal3.386894.48585K562NONO
chr1643944674394493-intron-Distal6.1053726.92145HepG2DDX59
chr1643945134394565-intron-Distal4.8145528.32335HepG2HNRNPK
chr1643883314388416-intron-Distal3.721593.69530HepG2CSTF2T
chr1643943924394436-intron-Distal5.078969.13275K562HNRNPK
chr1644011204401208-intron-Distal,intron-Proximal3.394203.01707K562SLTM
chr1643944054394419-intron-Distal5.352805.96444HepG2PCBP2
chr1643945834394617-intron-Distal4.705356.52680K562HNRNPK
chr1643886744388727-intron-Distal4.262633.41584HepG2FAM120A
chr1643944364394497-intron-Distal5.0148024.97531K562HNRNPK
chr1643875214387598-intron-Distal4.103953.57893K562EWSR1
chr1643943914394434-intron-Distal5.6348623.26693HepG2HNRNPK
chr1643945244394554-intron-Distal5.125695.41835HepG2DDX59
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PAM16 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PAM16 is not available on ENCORE database.

  • 44 RBPs can affect the levels of PAM16.  








The Knockdown/knockout RNA-Seq assay for PAM16 is not available on ENCORE database.





44 RBPs can affect the gene expression of PAM16 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PAM16ENSG00000217930.3126.3106064.452900.970603.601202.92820HepG2BOP1
PAM16ENSG00000217930.3245.74720152.197900.691102.994802.35440HepG2DDX6
PAM16ENSG00000217930.3102.3535061.256100.740502.568201.93600HepG2DNAJC2
PAM16ENSG00000217930.3230.15910161.628300.509901.931601.39320HepG2EIF4A3
PAM16ENSG00000217930.3129.1700067.077500.945303.187402.50540HepG2GPKOW
PAM16ENSG00000217930.3255.49810163.191600.646602.923002.24950HepG2MAGOH
PAM16ENSG00000217930.3310.33890164.095500.919205.298504.45040HepG2MATR3
PAM16ENSG00000217930.3221.52500127.899900.792404.809504.04450HepG2PCBP1
PAM16ENSG00000217930.3183.9845098.253800.904903.668502.51830HepG2RBM27
PAM16ENSG00000217930.3148.3151090.613800.710802.297901.56480HepG2RPS2
PAM16ENSG00000217930.3112.2413061.396500.870303.243802.55690HepG2SAFB2
PAM16ENSG00000217930.3205.70820135.494300.602302.686902.10290HepG2SF3B4
PAM16ENSG00000217930.3127.1202070.500300.850402.336301.62100HepG2SNRNP70
PAM16ENSG00000217930.3211.62270283.68850-0.422802.101601.64600HepG2SRFBP1
PAM16ENSG00000217930.3197.13220135.393700.541902.217401.65000HepG2SRSF5
PAM16ENSG00000217930.3164.8844066.990401.299307.646506.89100HepG2TIAL1
PAM16ENSG00000217930.3114.1873067.589500.756402.701402.14230HepG2TRIM56
PAM16ENSG00000217930.3145.9401064.731701.172705.449804.37720HepG2UCHL5
PAM16ENSG00000217930.3209.44640130.995500.677003.866303.24840HepG2ZNF622
PAM16ENSG00000217930.3542.56550376.498100.527104.731904.02370K562AGGF1
PAM16ENSG00000217930.3433.73200316.885300.452703.284501.61940K562AKAP1
PAM16ENSG00000217930.3563.22510413.711600.445002.500001.57460K562AKAP8
PAM16ENSG00000217930.3561.59960391.762600.519502.570201.93970K562AKAP8L
PAM16ENSG00000217930.3360.67510596.29550-0.725305.647804.86030K562AQR
PAM16ENSG00000217930.3344.10670235.671700.546003.549102.45540K562BCLAF1
PAM16ENSG00000217930.3279.59160178.792100.644903.459602.25710K562CSTF2
PAM16ENSG00000217930.3445.71780350.945200.344802.207301.61520K562DDX47
PAM16ENSG00000217930.3288.76130203.148300.507202.477301.67630K562FIP1L1
PAM16ENSG00000217930.347.67480132.16430-1.471003.688502.84620K562G3BP2
PAM16ENSG00000217930.3675.10840501.158900.429803.065402.27250K562GRSF1
PAM16ENSG00000217930.3171.90630265.11220-0.625002.192701.65260K562HNRNPC
PAM16ENSG00000217930.3281.28940167.095300.751304.000002.86620K562HNRNPM
PAM16ENSG00000217930.3379.70660210.068800.853905.340103.72160K562IGF2BP2
PAM16ENSG00000217930.3387.58770220.707100.812306.979605.61860K562MAGOH
PAM16ENSG00000217930.3324.29500220.249200.558103.472802.42360K562MATR3
PAM16ENSG00000217930.3226.39540320.89670-0.503302.215101.47170K562PCBP3
PAM16ENSG00000217930.3370.22440230.617700.682804.600103.50440K562PPIG
PAM16ENSG00000217930.3345.78690214.435800.689205.163704.28000K562PTBP1
PAM16ENSG00000217930.3325.99590210.226100.632803.872303.04170K562SRSF1
PAM16ENSG00000217930.3318.07160198.561300.679704.317002.95960K562SRSF5
PAM16ENSG00000217930.3188.17810280.14420-0.574103.541201.80380K562SRSF9
PAM16ENSG00000217930.353.65650129.71830-1.273603.351301.68300K562TAF15
PAM16ENSG00000217930.3317.21320212.746300.576203.197402.43740K562TARDBP
PAM16ENSG00000217930.3367.88760205.222100.842005.453804.24600K562TIA1
PAM16ENSG00000217930.3196.49720132.153300.572202.470701.71100K562U2AF2
PAM16ENSG00000217930.3496.35770659.44210-0.409902.939501.48970K562UBE2L3
PAM16ENSG00000217930.3511.06660671.79520-0.394502.779601.91470K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PAM16 is not available on ENCORE database.





21 RBPs can affect the splicing of PAM16 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPAM16ENSG00000217930.3chr16-4393483439361743932074393292440123244013210.715000.000030.05811includedHepG2FASTKD2
SEPAM16ENSG00000217930.3chr16-439348343936174393207439329244012324401271-0.209000.000070.00442excludedK562PRPF8
SEPAM16ENSG00000217930.3chr16-439348343936174393207439329244012324401271-0.234000.000040.00526excludedHepG2RBM22
SEPAM16ENSG00000217930.3chr16-4393483439361743932074393292440123244013210.410000.006400.09169includedHepG2U2AF1
SEPAM16ENSG00000217930.3chr16-439348343936174393207439329244012324401321-0.295000.000000.00068excludedHepG2AKAP1
SEPAM16ENSG00000217930.3chr16-439348343936174393207439329244012324401321-0.308000.000000.00008excludedHepG2DDX3X
SEPAM16ENSG00000217930.3chr16-439320743932924391368439150544012324401271-0.126000.000200.04667excludedK562HNRNPA1
SEPAM16ENSG00000217930.3chr16-439348343936174393207439329244012324401321-0.195000.001080.07603excludedK562SUPV3L1
SEPAM16ENSG00000217930.3chr16-439348343936174393207439329244012324401316-0.076000.004150.05397excludedK562PUS1
SEPAM16ENSG00000217930.3chr16-439348343936174393207439329244012324401321-0.307000.000000.00006excludedHepG2NCBP2
SEPAM16ENSG00000217930.3chr16-439348343936174393207439329244012324401321-0.338000.000030.00308excludedHepG2PTBP1
SEPAM16ENSG00000217930.3chr16-439348343936174393207439329244012324401321-0.192000.002490.09859excludedK562EFTUD2
SEPAM16ENSG00000217930.3chr16-439348343936174393207439329244012324401294-0.273000.000000.00039excludedHepG2MATR3
SEPAM16ENSG00000217930.3chr16-439348343936174393207439329244012324401321-0.425000.000190.00652excludedHepG2SRSF1
SEPAM16ENSG00000217930.3chr16-439348343936174393207439329244012324401294-0.255000.000570.04499excludedHepG2IGF2BP3
SEPAM16ENSG00000217930.3chr16-439348343936174393207439329244012324401321-0.445000.000000.00000excludedHepG2PCBP1
SEPAM16ENSG00000217930.3chr16-439320743932924391652439167344012324401271-0.411000.001290.05415excludedK562HNRNPK
A3SSPAM16ENSG00000217930.3chr16-439136843915844391368439150543932074393292-0.331000.000030.01025shorterK562RBM22
A3SSPAM16ENSG00000217930.3chr16-4391368439167343913684391505439320743932920.560000.001220.03131longerHepG2U2AF2
A3SSPAM16ENSG00000217930.3chr16-439136843915844391368439150543932074393292-0.309000.000100.08608shorterK562TRA2A
A3SSPAM16ENSG00000217930.3chr16-439136843916734391368439150543932074393292-0.414000.000000.00171shorterK562PTBP1
A3SSPAM16ENSG00000217930.3chr16-439136843916734391368439150543932074393292-0.435000.000000.00043shorterK562TARDBP
A3SSPAM16ENSG00000217930.3chr16-4391368439167343913684391505439320743932920.336000.000000.00008longerK562NCBP2
A3SSPAM16ENSG00000217930.3chr16-439136843916734391368439150543932074393292-0.387000.000040.04607shorterK562IGF2BP2
A3SSPAM16ENSG00000217930.3chr16-439136843916734391368439150543932074393292-0.447000.000000.00005shorterK562SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PAM16 is not avaliable on ENCORE database.