CGGBP1

General Information

Gene Name : CGGBP1
Gene ID : ENSG00000163320.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CGGBP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CGGBP1	ENSG00000163320.10	40.53	37.82	39.17	ENCSR000AEF
HepG2	CGGBP1	ENSG00000163320.10	25.81	36.87	31.34	ENCSR985KAT
K562	CGGBP1	ENSG00000163320.10	29.73	32.12	30.92	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CGGBP1 is not avaliable on ENCORE database.

Proteins bound to RNA

CGGBP1 RNA is bound by 18 proteins.

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eCLIP assay for CGGBP1 is not avaliable on ENCORE database.

18 proteins are bound to CGGBP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	88107318	88107423	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	5.23823	34.68651	HepG2	U2AF2
chr3	88107961	88108034	-	5'-UTR,intron-Distal	4.24744	27.36310	HepG2	U2AF2
chr3	88107792	88107856	-	intron-Distal	5.05484	13.06978	HepG2	U2AF2
chr3	88104471	88104537	-	3'-UTR,intron-Distal,intron-Proximal	5.04023	11.84897	K562	PUM2
chr3	88107385	88107438	-	intron-Distal,intron-Proximal	5.78790	10.98371	K562	SF3B4
chr3	88104702	88104816	-	CDS,intron-Distal,intron-Proximal	3.84551	10.57433	K562	RBM15
chr3	88107957	88108020	-	5'-UTR,intron-Distal	3.30776	10.36172	K562	U2AF2
chr3	88104835	88105101	-	CDS,intron-Distal	3.16900	10.09142	HepG2	GRWD1
chr3	88107825	88107882	-	intron-Distal	5.49425	9.80641	HepG2	U2AF1
chr3	88107749	88107842	-	intron-Distal	4.42308	8.91455	HepG2	PRPF4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 41 entries

eCLIP assay for CGGBP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CGGBP1 is not available on ENCORE database.
80 RBPs can affect the levels of CGGBP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CGGBP1 is not available on ENCORE database.

80 RBPs can affect the gene expression of CGGBP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CGGBP1	ENSG00000163320.6	3527.61410	2312.05800	0.60940	17.50140	16.20200	HepG2	ETF1
CGGBP1	ENSG00000163320.6	1065.53870	1680.08780	-0.65700	14.78330	13.56320	HepG2	UTP3
CGGBP1	ENSG00000163320.6	1034.82350	1777.33140	-0.78030	14.21510	12.41120	K562	CPSF6
CGGBP1	ENSG00000163320.6	1239.77500	1911.23440	-0.62440	12.96310	11.77140	HepG2	CELF1
CGGBP1	ENSG00000163320.6	1075.21890	1590.07270	-0.56450	12.08880	11.00920	HepG2	ACO1
CGGBP1	ENSG00000163320.6	1039.04000	1556.19920	-0.58280	11.84620	10.79650	HepG2	TRIM56
CGGBP1	ENSG00000163320.6	1115.47820	1908.96620	-0.77510	12.14170	10.20200	K562	RBM22
CGGBP1	ENSG00000163320.6	1470.36380	2055.08190	-0.48300	11.29280	9.95730	HepG2	DAZAP1
CGGBP1	ENSG00000163320.6	2612.15820	1895.01990	0.46290	10.24310	9.37630	HepG2	SSB
CGGBP1	ENSG00000163320.6	990.83700	1413.62050	-0.51270	9.63890	8.54970	HepG2	SAFB2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 88 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CGGBP1 is not available on ENCORE database.

9 RBPs can affect the splicing of CGGBP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CGGBP1	ENSG00000163320.6	chr3	-	88106340	88106442	88104563	88105149	88107168	88107373	0.23600	0.00000	0.00000	included	HepG2	HNRNPL
SE	CGGBP1	ENSG00000163320.6	chr3	-	88106340	88106442	88104563	88105149	88107168	88107373	0.20300	0.00000	0.00000	included	K562	HNRNPC
SE	CGGBP1	ENSG00000163320.6	chr3	-	88106340	88106442	88104563	88105149	88107168	88107373	0.14600	0.00004	0.00267	included	K562	TARDBP
SE	CGGBP1	ENSG00000163320.6	chr3	-	88106340	88106442	88104563	88105149	88107168	88107373	0.20500	0.00007	0.04480	included	HepG2	SMNDC1
SE	CGGBP1	ENSG00000163320.6	chr3	-	88106340	88106442	88104563	88105149	88107168	88107373	0.22000	0.00015	0.03792	included	HepG2	UCHL5
SE	CGGBP1	ENSG00000163320.6	chr3	-	88106340	88106442	88104563	88105149	88107168	88107373	0.09500	0.00023	0.02103	included	K562	HNRNPL
SE	CGGBP1	ENSG00000163320.6	chr3	-	88106340	88106442	88104563	88105149	88107168	88107373	-0.06100	0.00041	0.00802	excluded	K562	PUS1
SE	CGGBP1	ENSG00000163320.6	chr3	-	88106340	88106442	88104563	88105149	88107168	88107373	-0.06200	0.00043	0.06469	excluded	K562	LARP4
SE	CGGBP1	ENSG00000163320.6	chr3	-	88106340	88106442	88104563	88105149	88107168	88107373	-0.06800	0.00052	0.01642	excluded	K562	RBM15
SE	CGGBP1	ENSG00000163320.6	chr3	-	88106340	88106442	88104563	88105149	88107168	88107373	0.11400	0.00153	0.05189	included	K562	HNRNPU

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CGGBP1

General Information

Functions

Localization

Domains (AlphaFold: CGGBP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CGGBP1 is not avaliable on ENCORE database.

18 proteins are bound to CGGBP1 RNA:

eCLIP assay for CGGBP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CGGBP1 is not available on ENCORE database.

80 RBPs can affect the gene expression of CGGBP1 :

The Knockdown/knockout RNA-Seq assay for CGGBP1 is not available on ENCORE database.

9 RBPs can affect the splicing of CGGBP1 :

The Knockdown/knockout RNA-Seq assay for CGGBP1 is not avaliable on ENCORE database.