CGGBP1

General Information

Gene Name       : CGGBP1
Gene ID             : ENSG00000163320.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CGGBP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CGGBP1ENSG00000163320.1040.5337.8239.17ENCSR000AEF
HepG2CGGBP1ENSG00000163320.1025.8136.8731.34ENCSR985KAT
K562CGGBP1ENSG00000163320.1029.7332.1230.92ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CGGBP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CGGBP1 RNA is bound by 18 proteins.  







eCLIP assay for CGGBP1 is not avaliable on ENCORE database.





18 proteins are bound to CGGBP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr38810732088107382-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.170273.63043HepG2GRWD1
chr38810731888107423-3'-UTR,5'-UTR,intron-Distal,intron-Proximal5.2382334.68651HepG2U2AF2
chr38810731988107386-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.523728.25127K562U2AF2
chr38810729888107373-3'-UTR,5'-UTR,intron-Distal4.144984.93978HepG2BCLAF1
chr38810117688101254-3'-UTR,intron-Distal3.263613.59190K562TIA1
chr38810447188104537-3'-UTR,intron-Distal,intron-Proximal5.0402311.84897K562PUM2
chr38810201588102126-3'-UTR,intron-Distal4.706176.42531K562IGF2BP1
chr38810196488102042-3'-UTR,intron-Distal3.848913.21228K562TIA1
chr38810544288105496-5'-UTR,intron-Distal4.119494.02395HepG2KHSRP
chr38810810088108137-5'-UTR,intron-Distal,intron-Proximal3.893283.53770HepG2DDX3X
chr38810795788108020-5'-UTR,intron-Distal3.3077610.36172K562U2AF2
chr38810541088105498-5'-UTR,intron-Distal3.390654.30679K562KHSRP
chr38810806488108146-5'-UTR,intron-Distal,intron-Proximal4.174604.66602K562DDX3X
chr38810796188108034-5'-UTR,intron-Distal4.2474427.36310HepG2U2AF2
chr38810798188108015-5'-UTR,intron-Distal3.415457.45643K562TIA1
chr38810796488107981-5'-UTR,intron-Distal3.881185.02670K562TIA1
chr38810483588105101-CDS,intron-Distal3.1690010.09142HepG2GRWD1
chr38810500788105077-CDS,intron-Distal3.958047.03491K562RBM15
chr38810494088105007-CDS,intron-Distal3.320737.48787K562RBM15
chr38810490288104936-CDS,intron-Distal3.783158.43159K562YBX3
chr38810470288104816-CDS,intron-Distal,intron-Proximal3.8455110.57433K562RBM15
chr38810496788105077-CDS,intron-Distal3.679396.67001HepG2RBM15
chr38810493688104951-CDS,intron-Distal3.136076.38612K562YBX3
chr38817667188176780-intron-Distal4.223354.03269HepG2PTBP1
chr38810779288107856-intron-Distal5.0548413.06978HepG2U2AF2
chr38810784288107886-intron-Distal3.490554.35431HepG2PRPF4
chr38810778888107825-intron-Distal4.300998.31039HepG2U2AF1
chr38810767988107733-intron-Distal4.326863.37054HepG2XPO5
chr38810738588107438-intron-Distal,intron-Proximal5.7879010.98371K562SF3B4
chr38810774988107842-intron-Distal4.423088.91455HepG2PRPF4
chr38810779088107870-intron-Distal4.408726.02529K562U2AF2
chr38810782588107882-intron-Distal5.494259.80641HepG2U2AF1
chr38815825288158358-intron-Distal4.389136.88352HepG2HNRNPL
chr38810743888107544-intron-Distal,intron-Proximal3.002534.56635K562KHSRP
chr38810779388107872-intron-Distal3.112043.12916K562U2AF1
chr38810790588107957-intron-Distal4.024124.52374K562U2AF2
chr38810785588107914-intron-Distal4.617454.36138HepG2NKRF
chr38817629388176336-intron-Distal3.613523.35585HepG2QKI
chr38816014088160300-intron-Distal4.066483.45317HepG2HNRNPL
chr38810750288107569-intron-Distal4.079464.14779K562U2AF2
chr38810751888107573-intron-Distal4.154684.00239HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CGGBP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CGGBP1 is not available on ENCORE database.

  • 80 RBPs can affect the levels of CGGBP1.  








The Knockdown/knockout RNA-Seq assay for CGGBP1 is not available on ENCORE database.





80 RBPs can affect the gene expression of CGGBP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CGGBP1ENSG00000163320.61075.218901590.07270-0.5645012.0888011.00920HepG2ACO1
CGGBP1ENSG00000163320.61241.902101597.54310-0.363304.999803.99450HepG2AKAP8L
CGGBP1ENSG00000163320.62318.620802013.735700.203302.019201.41580HepG2AUH
CGGBP1ENSG00000163320.61304.004601589.72690-0.285803.982203.21170HepG2CKAP4
CGGBP1ENSG00000163320.61115.041401449.11670-0.378104.478503.18310HepG2YBX3
CGGBP1ENSG00000163320.61239.775001911.23440-0.6244012.9631011.77140HepG2CELF1
CGGBP1ENSG00000163320.61470.363802055.08190-0.4830011.292809.95730HepG2DAZAP1
CGGBP1ENSG00000163320.61668.443701250.977600.415304.547003.36420HepG2DDX24
CGGBP1ENSG00000163320.61507.560001966.62860-0.383502.348701.77570HepG2DDX6
CGGBP1ENSG00000163320.61004.757201372.42740-0.449904.401303.17630HepG2DHX30
CGGBP1ENSG00000163320.62105.398101521.268600.468705.282704.40110HepG2DKC1
CGGBP1ENSG00000163320.61051.754601422.95320-0.436105.899904.90550HepG2DNAJC21
CGGBP1ENSG00000163320.61095.932501410.34560-0.363905.834904.94020HepG2DNAJC2
CGGBP1ENSG00000163320.61494.515501207.157500.308002.684201.61800HepG2EIF3G
CGGBP1ENSG00000163320.61852.793901473.425000.330403.064801.91890HepG2ESF1
CGGBP1ENSG00000163320.63527.614102312.058000.6094017.5014016.20200HepG2ETF1
CGGBP1ENSG00000163320.61271.664601518.06410-0.255502.727201.75580HepG2HDGF
CGGBP1ENSG00000163320.61533.835201979.76580-0.368202.748102.05350HepG2HNRNPK
CGGBP1ENSG00000163320.61586.528001872.03320-0.238703.361102.62470HepG2HNRNPL
CGGBP1ENSG00000163320.61199.368401587.35770-0.404406.323805.43720HepG2HNRNPU
CGGBP1ENSG00000163320.61381.946501621.43570-0.230602.966002.20940HepG2ILF2
CGGBP1ENSG00000163320.61538.963502120.70040-0.462603.304902.62120HepG2MATR3
CGGBP1ENSG00000163320.61716.185502170.73090-0.339002.201301.63440HepG2NCBP2
CGGBP1ENSG00000163320.6782.050401168.56610-0.579402.321901.33030HepG2NONO
CGGBP1ENSG00000163320.61843.824301456.957900.339602.641601.91000HepG2NSUN2
CGGBP1ENSG00000163320.61461.275801933.52710-0.404002.447901.76530HepG2PABPC4
CGGBP1ENSG00000163320.61421.926601859.00270-0.386706.136505.28810HepG2PCBP1
CGGBP1ENSG00000163320.61094.074801415.79870-0.371904.410903.50000HepG2PPIL4
CGGBP1ENSG00000163320.61435.609901891.57960-0.397905.770805.03930HepG2PTBP1
CGGBP1ENSG00000163320.61845.321802064.96870-0.162201.900901.38920HepG2PUM1
CGGBP1ENSG00000163320.61701.744402063.46770-0.278101.887601.32780HepG2PUM2
CGGBP1ENSG00000163320.61369.869601619.59210-0.241602.828302.20790HepG2PUS1
CGGBP1ENSG00000163320.6946.383101443.48410-0.609103.256102.49340HepG2RAVER1
CGGBP1ENSG00000163320.61701.826102058.23340-0.274302.528101.70510HepG2RBM15
CGGBP1ENSG00000163320.6841.914601058.01720-0.329602.539301.94820HepG2RPS19
CGGBP1ENSG00000163320.6990.837001413.62050-0.512709.638908.54970HepG2SAFB2
CGGBP1ENSG00000163320.61393.792001858.24300-0.414902.660901.37460HepG2SART3
CGGBP1ENSG00000163320.6834.690601061.92820-0.347402.184901.34480HepG2SERBP1
CGGBP1ENSG00000163320.61620.385001969.42360-0.281403.614302.95140HepG2SF3B4
CGGBP1ENSG00000163320.61231.480901648.53430-0.420808.513707.48370HepG2SMN1
CGGBP1ENSG00000163320.6923.593501470.82010-0.671305.389904.02190HepG2SMNDC1
CGGBP1ENSG00000163320.61590.226902055.63350-0.370406.165405.52800HepG2SRSF1
CGGBP1ENSG00000163320.61538.699101920.64780-0.319903.388102.70780HepG2SRSF5
CGGBP1ENSG00000163320.62612.158201895.019900.4629010.243109.37630HepG2SSB
CGGBP1ENSG00000163320.61199.124801716.25640-0.517303.724302.42950HepG2STIP1
CGGBP1ENSG00000163320.61932.871702184.31770-0.176401.976801.43410HepG2SUCLG1
CGGBP1ENSG00000163320.61257.340701542.46730-0.294902.697102.20160HepG2TIAL1
CGGBP1ENSG00000163320.61039.040001556.19920-0.5828011.8462010.79650HepG2TRIM56
CGGBP1ENSG00000163320.62012.661301469.262200.453904.887404.06570HepG2U2AF1
CGGBP1ENSG00000163320.6533.27240748.74620-0.489603.072002.27350HepG2UCHL5
CGGBP1ENSG00000163320.61488.260601740.19010-0.225602.594801.91480HepG2UPF1
CGGBP1ENSG00000163320.61065.538701680.08780-0.6570014.7833013.56320HepG2UTP3
CGGBP1ENSG00000163320.61602.190202306.34460-0.525606.749205.69310K562AKAP8L
CGGBP1ENSG00000163320.62036.918002419.83440-0.248502.780801.86520K562ATP5C1
CGGBP1ENSG00000163320.61161.160801415.58590-0.285803.085502.07550K562BCLAF1
CGGBP1ENSG00000163320.61866.905402386.39580-0.354204.863903.37140K562CPEB4
CGGBP1ENSG00000163320.61034.823501777.33140-0.7803014.2151012.41120K562CPSF6
CGGBP1ENSG00000163320.63161.739002469.647300.356306.267805.34310K562DDX47
CGGBP1ENSG00000163320.6584.20330804.76560-0.462102.713301.39710K562DHX30
CGGBP1ENSG00000163320.62121.551702482.04540-0.226402.597201.75270K562DKC1
CGGBP1ENSG00000163320.61253.992201517.98870-0.275602.911201.66540K562EIF2S1
CGGBP1ENSG00000163320.61024.08760731.311500.485702.215701.32810K562EIF3A
CGGBP1ENSG00000163320.61743.514401292.870700.431303.184002.06860K562EIF3D
CGGBP1ENSG00000163320.61136.187701443.76700-0.345602.770201.94810K562EIF4A3
CGGBP1ENSG00000163320.61063.451401300.22980-0.290002.588601.48440K562EIF4B
CGGBP1ENSG00000163320.63797.922102990.483200.344706.188804.80140K562EIF4G2
CGGBP1ENSG00000163320.6969.990101260.28750-0.377703.727902.19610K562EWSR1
CGGBP1ENSG00000163320.62002.853701569.523700.351602.021301.42950K562G3BP2
CGGBP1ENSG00000163320.61774.654102326.50030-0.390604.192603.26460K562GRSF1
CGGBP1ENSG00000163320.61802.217102231.80390-0.308402.855301.77820K562HNRNPL
CGGBP1ENSG00000163320.61387.705701948.83800-0.489903.818602.54010K562IGF2BP2
CGGBP1ENSG00000163320.61264.695301656.37650-0.389203.696902.67450K562METAP2
CGGBP1ENSG00000163320.61324.117301674.59500-0.338804.654603.62700K562MTPAP
CGGBP1ENSG00000163320.61613.565801860.58100-0.205502.692501.95540K562NSUN2
CGGBP1ENSG00000163320.61454.627801823.02070-0.325702.830501.84120K562PCBP2
CGGBP1ENSG00000163320.61656.551802125.60800-0.359703.118302.23990K562PPIG
CGGBP1ENSG00000163320.6876.370701180.91320-0.430303.474802.44590K562PSIP1
CGGBP1ENSG00000163320.61487.701901990.47050-0.420004.986704.11920K562PTBP1
CGGBP1ENSG00000163320.61115.478201908.96620-0.7751012.1417010.20200K562RBM22
CGGBP1ENSG00000163320.61472.854601835.98480-0.317903.819902.87020K562SF3A3
CGGBP1ENSG00000163320.61155.551201632.88380-0.498806.683605.31800K562SF3B4
CGGBP1ENSG00000163320.6785.515001021.25530-0.378602.840501.79920K562SRFBP1
CGGBP1ENSG00000163320.61346.482201951.25430-0.535207.429006.28070K562SRSF1
CGGBP1ENSG00000163320.61557.861501905.02090-0.290202.604601.81290K562TIA1
CGGBP1ENSG00000163320.61487.758001869.03290-0.329202.665601.59690K562TRA2A
CGGBP1ENSG00000163320.62037.064501755.437900.214602.641801.81350K562WDR43
CGGBP1ENSG00000163320.6929.335201225.90040-0.399602.834801.60880K562XRN2
CGGBP1ENSG00000163320.62387.791402894.01970-0.277402.365701.57700K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CGGBP1 is not available on ENCORE database.





9 RBPs can affect the splicing of CGGBP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECGGBP1ENSG00000163320.6chr3-8810634088106442881045638810514988107168881073730.220000.000150.03792includedHepG2UCHL5
SECGGBP1ENSG00000163320.6chr3-881063408810644288104563881051498810716888107373-0.061000.000410.00802excludedK562PUS1
SECGGBP1ENSG00000163320.6chr3-881063408810644288104563881051498810716888107373-0.062000.000430.06469excludedK562LARP4
SECGGBP1ENSG00000163320.6chr3-8810634088106442881045638810514988107168881073730.236000.000000.00000includedHepG2HNRNPL
SECGGBP1ENSG00000163320.6chr3-8810634088106442881045638810514988107168881073730.095000.000230.02103includedK562HNRNPL
SECGGBP1ENSG00000163320.6chr3-8810634088106442881045638810514988107168881073730.146000.000040.00267includedK562TARDBP
SECGGBP1ENSG00000163320.6chr3-8810634088106442881045638810514988107168881073730.114000.001530.05189includedK562HNRNPU
SECGGBP1ENSG00000163320.6chr3-881063408810644288104563881051498810716888107373-0.068000.000520.01642excludedK562RBM15
SECGGBP1ENSG00000163320.6chr3-8810634088106442881045638810514988107168881073730.205000.000070.04480includedHepG2SMNDC1
SECGGBP1ENSG00000163320.6chr3-8810634088106442881045638810514988107168881073730.203000.000000.00000includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CGGBP1 is not avaliable on ENCORE database.