HLA-F-AS1

General Information

Gene Name       : HLA-F-AS1
Gene ID             : ENSG00000214922.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HLA-F-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HLA-F-AS1ENSG00000214922.92.250.991.62ENCSR000AEF
HepG2HLA-F-AS1ENSG00000214922.91.841.991.92ENCSR985KAT
K562HLA-F-AS1ENSG00000214922.92.502.292.40ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HLA-F-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HLA-F-AS1 RNA is bound by 4 proteins.  







eCLIP assay for HLA-F-AS1 is not avaliable on ENCORE database.





4 proteins are bound to HLA-F-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr62971663129716700-intron-Distal4.509745.64484HepG2PRPF8
chr62971472529714782-intron-Distal3.967673.60944K562TARDBP
chr62971577229715880-intron-Distal3.585263.86715K562HNRNPK
chr62971359929713706-intron-Distal,intron-Proximal3.604683.41981K562HNRNPK
chr62971394029714040-intron-Distal4.246583.58835K562HNRNPK
chr62971543129715579-intron-Distal3.664837.12565K562HNRNPK
chr62971652029716559-intron-Distal4.711883.13405HepG2EFTUD2
chr62971564929715733-intron-Distal5.4389111.19214K562HNRNPK
chr62971657329716622-intron-Distal5.392175.99517HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HLA-F-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HLA-F-AS1 is not available on ENCORE database.

  • 30 RBPs can affect the levels of HLA-F-AS1.  








The Knockdown/knockout RNA-Seq assay for HLA-F-AS1 is not available on ENCORE database.





30 RBPs can affect the gene expression of HLA-F-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HLA-F-AS1ENSG00000214922.533.8751068.75990-1.021302.335701.73640HepG2CELF1
HLA-F-AS1ENSG00000214922.5127.5142073.891300.787103.689502.85390HepG2DAZAP1
HLA-F-AS1ENSG00000214922.5237.9235067.699501.8132017.0775015.71430HepG2DKC1
HLA-F-AS1ENSG00000214922.5158.1675077.718001.025004.304903.51070HepG2EIF4A3
HLA-F-AS1ENSG00000214922.5117.4834069.860400.749802.738901.92830HepG2EIF4G2
HLA-F-AS1ENSG00000214922.5123.2263037.425301.719107.799606.79750HepG2HNRNPA1
HLA-F-AS1ENSG00000214922.598.2496041.632501.238603.866303.05780HepG2HNRNPC
HLA-F-AS1ENSG00000214922.558.5224029.709300.978001.985701.36490HepG2IGF2BP1
HLA-F-AS1ENSG00000214922.5170.2654073.936201.203305.988605.03240HepG2IGF2BP2
HLA-F-AS1ENSG00000214922.5130.5235078.427600.734802.339801.73490HepG2MAGOH
HLA-F-AS1ENSG00000214922.538.2446074.27620-0.957602.211601.66890HepG2PUM1
HLA-F-AS1ENSG00000214922.548.7888096.99640-0.991402.943202.38760HepG2NELFE
HLA-F-AS1ENSG00000214922.548.7110090.34990-0.891302.299901.73140HepG2RECQL
HLA-F-AS1ENSG00000214922.5107.1507067.106100.675002.108801.48190HepG2SLBP
HLA-F-AS1ENSG00000214922.518.2773046.51700-1.347702.198801.50640HepG2SNRNP70
HLA-F-AS1ENSG00000214922.5334.2777066.482002.3299036.2198034.85400HepG2SSB
HLA-F-AS1ENSG00000214922.536.3249078.55890-1.112802.270501.69700HepG2SUCLG1
HLA-F-AS1ENSG00000214922.571.2876040.172200.827401.963101.52670HepG2TIAL1
HLA-F-AS1ENSG00000214922.575.8348038.442200.980102.845302.16610HepG2ZC3H8
HLA-F-AS1ENSG00000214922.566.93580106.91850-0.675702.229601.72350HepG2ZNF622
HLA-F-AS1ENSG00000214922.546.2746093.07970-1.008202.848301.58940K562APOBEC3C
HLA-F-AS1ENSG00000214922.535.5915066.70720-0.906302.195801.60480K562DDX47
HLA-F-AS1ENSG00000214922.522.0839055.53860-1.330502.664401.41020K562EEF2
HLA-F-AS1ENSG00000214922.539.6216069.88030-0.818601.856701.34110K562FXR1
HLA-F-AS1ENSG00000214922.558.4833028.611101.031302.051201.36380K562GPKOW
HLA-F-AS1ENSG00000214922.584.5155035.805201.238903.568202.90130K562HNRNPC
HLA-F-AS1ENSG00000214922.535.8108079.79710-1.155903.179801.84670K562HNRNPK
HLA-F-AS1ENSG00000214922.594.8074047.742900.989603.146802.28510K562MTPAP
HLA-F-AS1ENSG00000214922.536.4356081.57710-1.162803.908503.13230K562PTBP1
HLA-F-AS1ENSG00000214922.539.1838082.32060-1.071003.316202.10700K562NELFE
HLA-F-AS1ENSG00000214922.527.0432057.88590-1.097902.460701.68790K562SYNCRIP
HLA-F-AS1ENSG00000214922.5101.2223056.250600.847502.774102.05430K562UPF1
HLA-F-AS1ENSG00000214922.5153.9305089.358900.784503.412102.43790K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HLA-F-AS1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of HLA-F-AS1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HLA-F-AS1 is not avaliable on ENCORE database.