ZNF420

General Information

Gene Name       : ZNF420
Gene ID             : ENSG00000197050.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF420)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF420ENSG00000197050.103.103.253.17ENCSR000AEF
HepG2ZNF420ENSG00000197050.102.963.843.40ENCSR985KAT
K562ZNF420ENSG00000197050.103.903.403.65ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF420 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF420 RNA is bound by 22 proteins.  







eCLIP assay for ZNF420 is not avaliable on ENCORE database.





22 proteins are bound to ZNF420 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193756942637569525+5'-UTR,intron-Distal,intron-Proximal4.9288711.76457HepG2PRPF8
chr193756944837569533+5'-UTR,intron-Distal,intron-Proximal4.745666.08021K562PRPF8
chr193756974237569852+intron-Distal4.347164.66266K562TARDBP
chr193756994937570047+intron-Distal3.936163.08314K562TARDBP
chr193754697637546992+intron-Distal3.061794.23871K562FAM120A
chr193750319937503210+intron-Distal6.9813626.75814HepG2SMNDC1
chr193750051437500551+intron-Distal5.516189.37673K562SMNDC1
chr193750050737500547+intron-Distal4.792854.67744K562BUD13
chr193750052137500555+intron-Distal5.272435.05269K562DHX30
chr193758623337586404+intron-Distal3.088784.74253K562KHSRP
chr193750370437503730+intron-Distal4.2769413.07666K562EIF4G2
chr193750320637503215+intron-Distal6.0039214.84403HepG2SF3B4
chr193754956837549587+intron-Distal5.192756.72205K562YWHAG
chr193750050337500560+intron-Distal3.147863.94537K562MTPAP
chr193754698437546991+intron-Distal3.8036923.82498K562EWSR1
chr193750050737500550+intron-Distal3.571307.46662K562TIA1
chr193750321037503216+intron-Distal6.9813626.75814HepG2SMNDC1
chr193750050337500549+intron-Distal4.491399.59244K562SLTM
chr193750142337501437+intron-Distal4.850366.40665K562NONO
chr193754956037549588+intron-Distal4.437955.21541K562HNRNPUL1
chr193750368337503702+intron-Distal4.644364.67744K562BUD13
chr193750140637501416+intron-Distal4.850366.40665K562NONO
chr193754956037549587+intron-Distal3.854783.02253K562MTPAP
chr193754955937549586+intron-Distal4.009263.02711K562EWSR1
chr193750368237503706+intron-Distal3.975103.19904K562TIA1
chr193750368237503702+intron-Distal4.2607313.07666K562EIF4G2
chr193750319437503197+intron-Distal6.0039214.84403HepG2SF3B4
chr193750319737503206+intron-Distal6.0039214.84403HepG2SF3B4
chr193759451437594622+intron-Distal5.156045.54528HepG2QKI
chr193759450437594607+intron-Distal5.265759.11780K562QKI
chr193754956037549587+intron-Distal4.063566.94465K562LSM11
chr193750143737501445+intron-Distal4.812876.16396K562NONO
chr193754956037549587+intron-Distal5.2270410.05828K562NONO
chr193750368237503700+intron-Distal3.387473.57774K562EWSR1
chr193754956037549581+intron-Distal5.051627.23080K562FASTKD2
chr193750140637501422+intron-Distal4.204934.06177K562NOLC1
chr193750319437503196+intron-Distal9.35918174.68943HepG2SF3A3
chr193750319437503199+intron-Distal6.9813626.75814HepG2SMNDC1
chr193750051637500550+intron-Distal4.157216.02361K562EIF4G2
chr193750370637503732+intron-Distal4.014103.45860K562TIA1
chr193754956637549587+intron-Distal5.5670522.51185K562SMNDC1
chr193754956037549568+intron-Distal5.192756.72205K562YWHAG
chr193754692737546932+intron-Distal5.1459924.43654K562EIF4G2
chr193754694037546976+intron-Distal4.7310560.55188K562EIF4G2
chr193754956037549566+intron-Distal5.5670522.51185K562SMNDC1
chr193754692837546939+intron-Distal3.2725812.88562K562BUD13
chr193750050337500548+intron-Distal6.1006516.66689K562NONO
chr193754697637546991+intron-Distal4.4101135.12400K562EIF4G2
chr193750051037500547+intron-Distal3.003573.13315K562HNRNPUL1
chr193754692837546993+intron-Distal4.2870145.07889K562TARDBP
chr193750370237503732+intron-Distal4.664684.67744K562BUD13
chr193754956037549587+intron-Distal5.183967.23689K562BUD13
chr193750320437503212+intron-Distal9.35918174.68943HepG2SF3A3
chr193750370037503731+intron-Distal3.387473.57774K562EWSR1
chr193754692837546975+intron-Distal3.8559433.46590K562EWSR1
chr193750368337503738+intron-Distal4.294273.08314K562TARDBP
chr193750321237503215+intron-Distal9.35918174.68943HepG2SF3A3
chr193750050237500550+intron-Distal6.2588716.14589K562YWHAG
chr193750319637503204+intron-Distal9.35918174.68943HepG2SF3A3
chr193754956037549587+intron-Distal4.310873.87995K562UCHL5
chr193750142237501448+intron-Distal4.243934.33501K562NOLC1
chr193754697537546984+intron-Distal3.8602725.47227K562EWSR1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF420 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF420 is not available on ENCORE database.

  • 40 RBPs can affect the levels of ZNF420.  








The Knockdown/knockout RNA-Seq assay for ZNF420 is not available on ENCORE database.





40 RBPs can affect the gene expression of ZNF420 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF420ENSG00000197050.6276.35860188.897800.548802.087901.61850HepG2AKAP1
ZNF420ENSG00000197050.691.9400049.912000.881202.457601.88980HepG2BOP1
ZNF420ENSG00000197050.6168.1798079.044601.089204.216403.26650HepG2CNOT7
ZNF420ENSG00000197050.6156.34280100.143000.642602.673302.04000HepG2CELF1
ZNF420ENSG00000197050.6115.1202071.985600.677302.573201.76640HepG2DDX19B
ZNF420ENSG00000197050.6114.7265061.002500.911203.087802.37420HepG2DDX21
ZNF420ENSG00000197050.6114.6556059.732900.940603.260802.26580HepG2DDX24
ZNF420ENSG00000197050.676.84400155.44660-1.016404.028303.29420HepG2DDX6
ZNF420ENSG00000197050.682.56260149.42360-0.855803.196302.56100HepG2EIF2S1
ZNF420ENSG00000197050.6252.13320150.884600.740604.863004.10580HepG2ETF1
ZNF420ENSG00000197050.6100.72540166.62060-0.726102.699002.01610HepG2FXR1
ZNF420ENSG00000197050.6116.1017068.242400.766502.469401.51180HepG2GNB2L1
ZNF420ENSG00000197050.671.35030156.52220-1.133404.949504.03680HepG2HNRNPK
ZNF420ENSG00000197050.6178.64130106.768200.742503.613902.74280HepG2NOL12
ZNF420ENSG00000197050.6216.16620149.933100.527702.288001.70990HepG2QKI
ZNF420ENSG00000197050.6290.03780126.116001.2014010.598309.72870HepG2RBM22
ZNF420ENSG00000197050.6139.5581080.595300.792002.893201.87790HepG2RBM27
ZNF420ENSG00000197050.6121.0504052.962301.192504.654703.80000HepG2RPLP0
ZNF420ENSG00000197050.6134.2291079.361700.758102.367901.49200HepG2RPS10
ZNF420ENSG00000197050.6268.58670123.694901.1185010.253209.38630HepG2SSB
ZNF420ENSG00000197050.6126.0939053.319201.241704.659903.85520HepG2U2AF1
ZNF420ENSG00000197050.6109.8548071.017100.629301.828101.31920HepG2UTP3
ZNF420ENSG00000197050.6197.63230299.66470-0.600503.383102.00630K562APOBEC3C
ZNF420ENSG00000197050.6630.03330302.456501.0586011.2569010.19130K562AQR
ZNF420ENSG00000197050.6264.27490174.783500.596402.740801.70980K562EIF3D
ZNF420ENSG00000197050.661.42620116.52910-0.923803.071002.16540K562FMR1
ZNF420ENSG00000197050.6212.74190143.322900.569702.151301.53920K562G3BP2
ZNF420ENSG00000197050.658.98840114.93170-0.962303.165402.53250K562HNRNPC
ZNF420ENSG00000197050.699.27940196.26720-0.983304.658103.18540K562IGF2BP2
ZNF420ENSG00000197050.6128.03600199.69890-0.641302.440301.34190K562IGF2BP3
ZNF420ENSG00000197050.6170.22200268.21660-0.656003.140702.16150K562MBNL1
ZNF420ENSG00000197050.698.37170146.81410-0.577702.050701.34950K562MTPAP
ZNF420ENSG00000197050.6106.89600200.55540-0.907804.204103.40200K562PTBP1
ZNF420ENSG00000197050.6146.47130218.00450-0.573702.501301.93290K562RBM15
ZNF420ENSG00000197050.6119.79790192.40140-0.683502.599101.78660K562RBM22
ZNF420ENSG00000197050.6111.03950196.59220-0.824103.668102.85980K562SRSF1
ZNF420ENSG00000197050.684.80350153.82600-0.859103.091602.01650K562SUPV3L1
ZNF420ENSG00000197050.697.13250199.00510-1.034804.557403.64440K562TARDBP
ZNF420ENSG00000197050.6130.55220197.65020-0.598302.684201.43470K562TROVE2
ZNF420ENSG00000197050.693.05760162.77110-0.806603.047901.97360K562UCHL5
ZNF420ENSG00000197050.6253.80330340.70220-0.424802.148601.39890K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF420 is not available on ENCORE database.





1 RBPs can affect the splicing of ZNF420 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXEZNF420ENSG00000197050.6chr19+3757124637571290376180293761821637569336375694723762104537621212-0.332000.002810.022192includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF420 is not avaliable on ENCORE database.